Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 2.4e-149 532.3 307 100.0
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 4.4e-135 485.0 307 90.2
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.8e-112 409.8 308 75.6
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 2.9e-110 402.5 309 76.4
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 6.4e-110 401.4 310 76.8
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 9.2e-109 397.5 310 76.5
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 2.1e-108 396.4 306 76.1
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.0e-107 394.0 319 70.2
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 3.9e-107 392.1 320 75.6
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 5.1e-107 391.7 307 73.0
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 6.6e-107 391.3 308 76.0
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 8.6e-107 391.0 305 76.1
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.1e-106 390.6 308 74.7
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.9e-106 389.8 318 72.3
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 4.3e-106 388.7 311 75.9
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.2e-105 387.1 308 76.3
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.2e-105 387.1 306 70.6
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.2e-105 387.1 309 73.8
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 2.8e-105 386.0 309 70.9
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.6e-105 385.6 309 74.8
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 6.2e-105 384.8 309 69.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 8.1e-105 384.4 309 72.2
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 8.1e-105 384.4 306 74.5
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.1e-104 384.0 309 74.4
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.1e-104 384.0 310 72.9
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-104 384.0 307 73.9
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.8e-104 383.3 309 63.4
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 5.2e-104 381.7 306 74.2
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 4.4e-103 378.6 318 72.6
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 2.2e-102 376.3 307 73.9
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.9e-102 375.9 309 62.1
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.1e-101 374.0 309 72.5
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 1.4e-101 373.6 307 70.4
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.4e-101 372.9 309 73.1
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 7.1e-101 371.3 309 70.2
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 7.1e-101 371.3 310 68.4
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.5e-100 369.0 311 73.6
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 4.6e-100 368.6 309 73.1
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 6.0e-100 368.2 307 73.3
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 7.8e-100 367.9 313 72.8
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 7.8e-100 367.9 315 72.4
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 1.7e-99 366.7 306 71.2
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.7e-99 366.7 311 60.1
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.3e-99 366.3 313 65.5
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 2.3e-99 366.3 315 61.0
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 3.0e-99 365.9 302 61.6
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 3.0e-99 365.9 310 72.3
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 3.9e-99 365.5 312 61.9
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 3.9e-99 365.5 312 61.9
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 6.6e-99 364.8 307 72.6
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 8.7e-99 364.4 306 64.7
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.1e-98 364.0 308 72.4
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.5e-98 363.6 312 61.9
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.5e-98 363.6 308 69.8
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 3.3e-98 362.5 312 62.2
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 5.6e-98 361.7 309 68.9
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 5.6e-98 361.7 312 62.2
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 7.3e-98 361.3 310 65.2
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 7.3e-98 361.3 318 60.7
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.3e-97 360.5 311 66.2
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.3e-97 360.5 307 63.2
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.3e-97 360.5 306 60.1
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.4e-96 356.3 311 59.8
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 2.4e-96 356.3 309 72.5
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 5.3e-96 355.1 310 69.0
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.2e-95 354.0 311 59.2
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.2e-95 354.0 311 59.8
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.6e-95 352.8 342 57.0
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 2.6e-95 352.8 286 72.7
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 9.9e-95 350.9 313 59.1
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.7e-94 350.1 311 58.8
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 3.8e-94 349.0 311 59.2
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 6.4e-94 348.2 308 58.8
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 5.4e-93 345.1 314 59.6
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 4.6e-92 342.0 321 62.9
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 1.3e-91 340.5 310 56.8
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 1.3e-91 340.5 282 75.2
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 3.9e-91 339.0 338 65.1
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 4.3e-90 335.5 313 64.2
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 7.4e-90 334.7 308 69.8
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 7.4e-90 334.7 289 73.7
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 4.8e-89 332.0 266 72.9
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 6.2e-89 331.6 308 59.7
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.1e-88 330.9 311 55.0
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.8e-88 330.1 307 56.0
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.5e-87 327.0 319 65.2
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.6e-87 326.2 358 55.0
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.6e-87 326.2 358 55.0
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.9e-86 322.8 318 64.5
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 6.4e-86 321.6 275 69.8
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.9e-85 320.1 216 86.6
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.1e-84 316.6 286 71.7
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.3e-83 313.9 284 71.1
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 3.0e-83 312.8 340 51.8
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 2.5e-82 309.7 308 65.3
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 3.7e-81 305.8 308 65.9
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.7e-81 305.8 312 63.8
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.5e-79 300.4 352 55.1
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.5e-79 300.4 352 55.1
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.9e-78 296.2 307 51.8
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 3.8e-78 295.8 257 73.2
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 8.4e-78 294.7 326 58.6
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.4e-77 293.9 257 72.8
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 2.1e-76 290.0 264 70.1
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 1.8e-75 287.0 311 51.1
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 2.3e-75 286.6 213 78.9
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 3.3e-74 282.7 259 57.5
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.1e-73 280.0 264 58.3
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.6e-71 273.1 243 72.8
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 8.7e-67 258.1 245 68.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.5e-66 257.3 236 75.4
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 4.3e-66 255.8 273 52.0
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 4.3e-66 255.8 193 83.9
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 3.7e-65 252.7 299 47.8
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.1e-64 251.1 249 57.8
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.4e-64 250.8 234 58.5
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.1e-64 249.6 235 72.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.2e-63 247.7 234 58.5
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.2e-63 247.7 235 71.9
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 2.0e-63 246.9 241 72.6
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-62 244.2 215 74.4
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.7e-62 243.8 236 72.5
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.4e-59 234.2 295 49.5
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 8.8e-59 231.5 234 71.8
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 2.2e-57 226.9 129 81.4
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 6.3e-57 225.3 233 68.2
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.1e-53 214.5 239 51.9
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 1.8e-48 197.2 242 47.9
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 9.1e-48 194.9 290 42.1
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 3.8e-46 189.5 321 48.0
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.5e-45 187.6 236 47.5
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.5e-45 187.6 236 47.5
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 4.2e-45 186.0 293 50.9
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.3e-43 180.3 245 60.8
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 9.7e-42 174.9 288 40.6
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 3.5e-39 166.4 150 78.0
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.3e-38 164.5 145 72.4
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 2.2e-38 163.7 323 34.7
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.2e-36 157.9 243 51.4
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.0e-35 154.8 175 50.3
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 1.2e-34 151.4 247 40.9
Actinidia04619 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.1e-32 143.3 74 82.4
Zm00001eb164550 Zea mays HOM05D004700 ORTHO05D005576 3.2e-29 133.3 73 78.1
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 2.1e-28 130.6 165 48.5
Ah.06g187690 Amaranthus hybridus HOM05D004700 ORTHO05D000031 5.2e-27 125.9 73 76.7
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 4.1e-24 116.3 92 64.1
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 4.1e-24 116.3 159 61.6
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 5.9e-23 112.5 168 42.3
Zm00001eb046150 Zea mays HOM05D004700 ORTHO05D005576 1.7e-22 110.9 59 79.7
Zm00001eb352830 Zea mays HOM05D004700 ORTHO05D005576 9.8e-18 95.1 50 78.0
Cre03.g161500 Chlamydomonas reinhardtii HOM05D004700 ORTHO05D005576 2.9e-17 93.6 128 34.4
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 1.4e-16 91.3 138 40.6
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.3e-14 84.7 86 52.3
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 5.2e-11 72.8 52 67.3
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 5.2e-11 72.8 52 67.3
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 4.9e-09 66.2 95 46.3
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.4e-09 65.9 103 42.7
Peaxi162Scf00000g00758 Petunia axillaris HOM05D004700 ORTHO05D005576 2.3e-06 57.4 100 36.0


User provided reference genes

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