Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 7.6e-302 1039.6 505 100.0
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 1.4e-284 982.2 509 95.1
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 4.0e-125 452.6 545 47.7
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.3e-123 447.6 539 47.5
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.4e-122 444.1 533 47.3
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.1e-122 442.6 551 44.5
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.1e-122 442.6 551 44.5
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 4.1e-122 442.6 549 45.0
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 6.2e-118 428.7 528 45.8
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.0e-117 427.9 530 44.7
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.0e-117 427.9 520 46.2
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 1.8e-117 427.2 550 44.7
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.1e-117 426.4 556 44.2
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 4.0e-117 426.0 536 45.7
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 5.2e-117 425.6 536 46.1
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 8.9e-117 424.9 522 46.4
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 8.9e-117 424.9 555 45.2
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 5.8e-116 422.2 527 46.7
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.4e-114 417.5 545 44.6
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 1.9e-114 417.2 534 45.7
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 2.4e-114 416.8 536 45.1
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.0e-114 415.2 533 45.4
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.0e-114 415.2 533 45.2
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 7.0e-114 415.2 533 45.2
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 3.5e-113 412.9 532 45.9
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 3.0e-112 409.8 530 44.7
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.9e-112 409.5 540 43.7
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 3.9e-112 409.5 536 44.8
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 5.0e-112 409.1 535 44.7
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.5e-111 406.8 533 43.7
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 3.3e-111 406.4 526 44.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.3e-111 406.4 530 44.9
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 7.3e-111 405.2 530 43.6
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 9.5e-111 404.8 528 43.6
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 1.6e-110 404.1 534 44.2
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 2.1e-110 403.7 533 43.2
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 2.1e-110 403.7 534 43.8
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 3.6e-110 402.9 533 42.6
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 6.2e-110 402.1 528 43.2
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.1e-109 401.4 522 43.1
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.3e-109 400.2 533 43.2
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 3.1e-109 399.8 516 45.2
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.0e-109 399.4 534 42.1
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 4.0e-109 399.4 540 42.8
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 7.5e-108 395.2 535 44.1
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 7.5e-108 395.2 532 42.9
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 9.8e-108 394.8 528 42.2
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 9.8e-108 394.8 538 42.4
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 8.3e-107 391.7 539 40.6
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 8.3e-107 391.7 504 42.5
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.4e-106 391.0 526 42.2
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.2e-106 389.8 531 42.2
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 5.4e-106 389.0 532 43.0
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 7.1e-106 388.7 533 40.5
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 1.6e-105 387.5 522 42.1
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.6e-105 387.5 569 41.3
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.7e-105 386.7 532 43.8
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 1.0e-104 384.8 534 42.7
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.0e-104 384.8 551 40.8
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 1.0e-104 384.8 526 40.9
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 1.3e-104 384.4 523 41.9
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 2.5e-103 380.2 537 41.0
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 2.5e-103 380.2 520 41.5
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 9.5e-103 378.3 508 42.1
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 1.6e-102 377.5 531 42.0
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 8.1e-102 375.2 517 40.8
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 1.4e-101 374.4 519 42.4
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.3e-101 373.6 543 41.8
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 4.0e-101 372.9 552 39.9
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.5e-100 370.9 517 42.0
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 2.6e-100 370.2 519 40.8
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 5.8e-100 369.0 535 41.9
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 7.6e-100 368.6 538 42.2
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 7.6e-100 368.6 540 41.9
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 1.7e-99 367.5 541 40.5
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 8.4e-99 365.2 557 41.3
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 4.1e-98 362.8 499 40.7
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.6e-97 360.9 538 40.1
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 1.6e-97 360.9 540 40.7
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 8.6e-96 355.1 534 39.9
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 1.1e-95 354.8 535 40.9
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 1.9e-95 354.0 538 39.8
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 9.6e-95 351.7 529 37.6
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 4.7e-94 349.4 551 39.6
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 6.2e-94 349.0 525 39.2
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 8.1e-94 348.6 535 39.8
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 8.1e-94 348.6 536 40.5
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 1.1e-93 348.2 525 39.2
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 4.0e-93 346.3 473 42.9
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 4.0e-93 346.3 507 38.1
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 5.2e-93 345.9 524 39.7
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 8.9e-93 345.1 517 39.5
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 8.9e-93 345.1 511 39.1
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 4.4e-92 342.8 505 38.4
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 5.8e-92 342.4 522 39.1
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.8e-92 342.4 516 39.7
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 7.6e-92 342.0 539 39.3
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 9.9e-92 341.7 531 39.4
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.3e-91 341.3 511 39.1
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.3e-91 341.3 548 38.9
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 1.7e-91 340.9 520 40.6
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.2e-91 340.5 537 38.9
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 4.9e-91 339.3 574 38.0
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 1.9e-90 337.4 511 39.1
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 4.2e-90 336.3 513 37.0
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.6e-89 334.3 487 40.7
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 4.6e-89 332.8 530 38.3
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 2.3e-88 330.5 504 40.7
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 3.0e-88 330.1 521 35.3
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.9e-83 312.8 500 39.2
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.9e-82 310.8 470 40.9
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 6.0e-81 305.8 527 37.2
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.0e-80 305.1 496 38.3
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 5.6e-79 299.3 533 36.6
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 9.6e-79 298.5 535 35.7
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 5.8e-76 289.3 460 37.0
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 8.7e-72 275.4 392 40.3
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 1.9e-71 274.2 525 35.4
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.0e-68 264.2 500 35.8
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.2e-66 256.9 493 34.1
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-65 253.8 493 34.1
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.5e-58 230.7 514 31.7
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-56 224.2 459 32.5
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-56 224.2 459 32.5
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 3.9e-56 223.4 509 30.1
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.4e-52 210.3 516 30.8
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.8e-45 188.0 263 44.9
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.8e-40 169.1 457 28.7
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.8e-40 169.1 457 28.7
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 5.7e-39 166.4 364 30.2
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 7.7e-36 156.0 522 26.2
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.7e-35 154.8 301 35.9
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.2e-35 154.5 543 25.2
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.2e-34 150.2 466 26.6
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 6.7e-32 142.9 496 25.2
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 2.0e-31 141.4 149 51.0
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 7.5e-31 139.4 409 26.2
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 7.0e-29 132.9 120 52.5
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.2e-28 132.1 165 45.5
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.2e-25 122.1 454 25.6
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 6.5e-19 99.8 482 23.0
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.1e-18 99.0 370 23.2
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 4.2e-18 97.1 100 54.0
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 2.0e-12 78.2 68 52.9
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-12 77.8 280 27.1
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.5e-12 77.4 395 23.3
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 7.8e-12 76.3 188 29.3
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 2.3e-11 74.7 57 54.4
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 2.3e-11 74.7 85 38.8
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 9.5e-10 69.3 53 52.8
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.6e-09 67.4 57 47.4
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 5.7e-07 60.1 106 30.2
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 5.7e-07 60.1 56 48.2
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 9.8e-07 59.3 45 51.1


User provided reference genes

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