Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 8.9e-263 909.8 493 100.0
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 5.8e-254 880.6 493 97.6
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 7.0e-183 644.4 496 74.2
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 2.9e-181 639.0 509 72.5
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 9.4e-180 634.0 501 73.1
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.6e-179 632.1 507 72.4
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.0e-178 630.6 510 71.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.8e-178 629.8 508 71.7
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 7.5e-177 624.4 507 71.8
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 9.1e-175 617.5 510 70.0
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.6e-174 616.7 508 70.1
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.9e-173 612.5 494 70.2
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 2.9e-173 612.5 494 70.2
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 6.5e-173 611.3 508 69.9
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 8.5e-173 610.9 500 69.8
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 7.2e-172 607.8 495 69.1
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-171 607.1 530 67.5
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 2.7e-171 605.9 496 69.8
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.0e-170 602.1 540 66.1
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 4.0e-170 602.1 498 69.3
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 6.8e-170 601.3 501 69.1
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 4.4e-169 598.6 508 69.1
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 7.5e-169 597.8 509 67.4
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.3e-168 597.0 495 69.1
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.7e-168 596.7 495 68.7
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.7e-168 596.7 511 67.9
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.7e-168 596.7 511 67.9
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.8e-168 595.9 500 68.2
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 4.8e-168 595.1 500 68.2
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 4.8e-168 595.1 483 69.8
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.8e-167 593.2 500 68.0
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.1e-167 592.4 465 71.0
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 3.1e-167 592.4 502 66.7
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 7.0e-167 591.3 496 68.8
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 7.0e-167 591.3 500 67.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 9.1e-167 590.9 511 67.5
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 9.1e-167 590.9 496 68.3
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.2e-166 590.5 511 67.1
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.2e-166 590.5 501 68.1
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.6e-166 590.1 485 68.5
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.0e-166 589.7 509 67.2
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.0e-166 589.7 519 67.4
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 2.0e-166 589.7 505 67.5
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 2.7e-166 589.3 510 68.0
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 3.5e-166 589.0 510 67.8
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 4.5e-166 588.6 508 66.5
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.9e-165 585.9 500 67.2
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 5.0e-165 585.1 500 67.2
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.5e-164 583.6 510 67.8
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.9e-164 583.2 520 65.4
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 7.2e-164 581.3 511 66.5
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 9.5e-164 580.9 500 66.2
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.6e-163 580.1 494 67.6
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.6e-163 580.1 501 66.5
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.1e-163 579.7 500 66.6
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.7e-163 578.6 511 65.9
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.8e-162 576.6 500 66.6
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 3.0e-162 575.9 500 66.8
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 3.0e-162 575.9 501 66.3
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.2e-161 573.9 488 67.0
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 5.7e-161 571.6 494 66.4
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 7.5e-161 571.2 494 67.0
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 7.5e-161 571.2 502 65.9
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.3e-160 570.5 494 65.8
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.8e-159 566.6 500 66.2
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 2.4e-159 566.2 503 65.4
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 3.5e-158 562.4 499 65.5
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.0e-157 560.8 517 63.8
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.3e-157 560.5 510 64.3
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 2.3e-157 559.7 517 64.2
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 2.9e-157 559.3 513 62.4
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.9e-157 559.3 489 66.5
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 3.8e-157 558.9 490 65.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.5e-156 556.2 490 64.3
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.5e-156 556.2 507 63.9
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.6e-156 555.1 423 73.5
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 5.6e-156 555.1 510 63.1
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 7.3e-156 554.7 511 63.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 7.3e-156 554.7 514 63.2
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-155 553.5 480 66.0
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 1.6e-155 553.5 501 64.3
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.8e-155 552.7 513 62.4
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 4.7e-155 552.0 511 62.6
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.1e-155 551.6 490 64.3
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 6.8e-154 548.1 513 62.0
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 6.8e-154 548.1 513 62.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 6.8e-154 548.1 504 65.5
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.5e-153 547.0 511 62.4
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 9.8e-153 544.3 509 63.9
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-152 543.5 483 64.2
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 2.9e-152 542.7 490 63.9
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.1e-151 540.8 509 64.6
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 3.2e-151 539.3 500 63.2
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 7.0e-151 538.1 490 62.7
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.7e-150 536.2 509 61.7
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 2.7e-150 536.2 511 61.8
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 4.6e-150 535.4 509 61.9
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.3e-149 533.9 498 62.2
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.3e-149 533.9 458 65.1
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 6.6e-149 531.6 448 68.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.0e-146 522.3 532 61.8
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.9e-143 513.5 445 67.2
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.5e-142 509.2 381 72.7
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 4.0e-138 495.7 488 62.7
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 7.1e-135 485.0 536 57.8
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.0e-133 481.1 471 57.5
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.5e-132 476.5 359 71.0
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 3.3e-132 476.1 485 59.4
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 2.4e-122 443.4 482 57.3
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 7.1e-119 431.8 462 60.6
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 7.1e-119 431.8 393 59.8
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 7.3e-116 421.8 458 56.3
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 3.1e-114 416.4 509 52.8
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.4e-111 407.5 397 61.0
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.6e-110 404.1 394 61.7
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 9.9e-105 384.8 379 63.3
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.3e-92 343.2 497 49.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 5.7e-92 342.4 427 48.9
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.7e-86 323.6 324 55.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 6.1e-86 322.4 351 55.3
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 6.7e-85 318.9 380 55.8
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 6.7e-85 318.9 380 55.8
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.1e-82 311.6 206 78.6
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 9.4e-79 298.5 420 47.1
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 3.1e-74 283.5 417 43.2
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 4.1e-74 283.1 254 65.0
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-71 274.6 220 70.0
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.7e-67 260.0 222 66.2
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.7e-59 233.4 361 42.9
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.9e-57 226.1 272 52.6
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.9e-55 221.1 207 63.8
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.6e-52 210.7 438 35.2
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 7.2e-47 192.6 392 36.0
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.5e-41 173.3 165 61.2
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.0e-33 147.9 96 77.1
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.7e-33 147.5 106 64.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 2.8e-30 137.5 91 76.9
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 1.1e-29 135.6 136 62.5
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.1e-29 134.0 235 44.3
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 7.1e-26 122.9 87 72.4
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 2.4e-18 97.8 122 49.2
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.7e-16 91.7 88 61.4
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 3.0e-16 90.9 185 36.8
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.1e-15 89.0 158 47.5
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.2e-09 68.9 71 59.2
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.6e-09 68.6 63 60.3
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.0e-09 66.6 61 55.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 6.0e-09 66.6 61 55.7
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.5e-07 61.2 61 52.5
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 8.1e-06 56.2 96 32.3


User provided reference genes

Program Settings