Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.4e-92 342.4 209 100.0
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 7.2e-89 330.9 209 96.2
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 2.2e-53 213.0 206 62.6
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 3.0e-50 202.6 209 58.9
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 4.4e-46 188.7 155 67.1
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 4.9e-45 185.3 159 64.8
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 5.6e-41 171.8 207 52.2
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 2.6e-38 162.9 159 59.7
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 3.4e-38 162.5 160 56.9
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 7.6e-38 161.4 160 57.5
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.3e-37 160.6 160 56.2
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.9e-37 159.5 159 54.7
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 4.9e-37 158.7 149 59.7
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 6.4e-37 158.3 158 54.4
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 6.4e-37 158.3 155 56.8
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 8.4e-37 157.9 159 57.9
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 1.1e-36 157.5 154 54.5
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.4e-36 157.1 154 58.4
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.2e-36 155.6 155 57.4
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 5.4e-36 155.2 151 54.3
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.2e-35 154.1 155 54.2
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 1.6e-35 153.7 154 57.1
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 2.1e-35 153.3 157 55.4
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 2.7e-35 152.9 154 57.1
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 3.5e-35 152.5 159 49.7
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 4.6e-35 152.1 154 53.2
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 6.0e-35 151.8 152 55.3
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 6.0e-35 151.8 159 50.3
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 7.8e-35 151.4 159 49.7
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 1.0e-34 151.0 143 58.7
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 1.0e-34 151.0 153 53.6
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 1.3e-34 150.6 150 53.3
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 1.3e-34 150.6 150 54.0
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 1.7e-34 150.2 154 55.8
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 3.0e-34 149.4 154 55.8
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.0e-34 149.4 160 55.0
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 3.0e-34 149.4 153 52.9
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 3.9e-34 149.1 154 56.5
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.9e-34 149.1 154 55.2
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 6.6e-34 148.3 160 54.4
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 8.7e-34 147.9 160 52.5
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 1.5e-33 147.1 160 54.4
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.5e-33 147.1 154 55.8
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 3.3e-33 146.0 148 56.1
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 4.3e-33 145.6 154 53.9
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.6e-33 145.2 158 52.5
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 7.3e-33 144.8 154 53.9
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 9.6e-33 144.4 160 52.5
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.3e-32 144.1 162 53.1
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.3e-32 144.1 162 53.1
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 1.3e-32 144.1 162 53.1
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 1.3e-32 144.1 149 55.7
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.6e-32 143.7 156 55.1
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.1e-32 143.3 154 53.9
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 3.6e-32 142.5 148 54.7
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.4e-31 140.6 162 52.5
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 1.8e-31 140.2 162 50.6
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 1.8e-31 140.2 207 45.9
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 2.4e-31 139.8 154 53.9
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 4.0e-31 139.0 156 54.5
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 9.0e-31 137.9 145 55.9
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 9.0e-31 137.9 159 47.8
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 9.0e-31 137.9 156 52.6
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 2.0e-30 136.7 195 45.1
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 3.4e-30 136.0 160 51.9
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 3.4e-30 136.0 160 51.9
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 7.6e-30 134.8 154 48.7
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 8.4e-29 131.3 158 48.1
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.4e-28 129.8 151 49.7
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 3.2e-28 129.4 159 47.2
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.2e-27 127.5 155 50.3
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 2.7e-27 126.3 157 49.0
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 3.5e-27 125.9 160 48.1
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 3.5e-27 125.9 155 49.7
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 4.6e-27 125.6 155 49.0
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 2.3e-26 123.2 162 48.1
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.0e-26 122.9 190 43.7
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 3.9e-26 122.5 154 46.1
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 5.1e-26 122.1 159 47.2
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 5.1e-26 122.1 161 46.0
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 8.7e-26 121.3 155 45.2
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 8.7e-26 121.3 162 46.9
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 8.7e-26 121.3 160 48.8
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 1.9e-25 120.2 202 48.0
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.5e-25 119.8 159 44.7
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 7.4e-25 118.2 218 38.5
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.1e-24 116.7 155 46.5
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.7e-24 115.9 159 41.5
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.7e-24 115.9 159 41.5
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 4.8e-24 115.5 159 40.9
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 8.1e-24 114.8 205 38.0
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 2.4e-23 113.2 153 43.8
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.4e-23 113.2 189 42.9
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 4.0e-23 112.5 160 46.2
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 5.3e-23 112.1 160 46.2
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 9.0e-23 111.3 109 62.4
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.0e-21 107.8 160 45.0
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 1.9e-20 103.6 155 43.9
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 5.5e-20 102.1 153 43.1
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.5e-20 102.1 153 43.1
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 5.5e-20 102.1 206 44.2
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 5.5e-20 102.1 148 43.2
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 7.1e-20 101.7 157 38.9
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 3.5e-19 99.4 126 47.6
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 6.0e-19 98.6 152 44.1
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 5.1e-18 95.5 160 41.9
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 1.1e-17 94.4 155 41.9
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 5.7e-17 92.0 103 50.5
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 5.7e-17 92.0 160 40.6
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 1.6e-16 90.5 104 49.0
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 2.8e-16 89.7 199 36.7
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 3.7e-16 89.4 162 40.1
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 4.8e-16 89.0 154 40.9
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 4.8e-16 89.0 106 50.0
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 1.8e-15 87.0 207 35.7
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 3.1e-15 86.3 89 56.2
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 6.9e-15 85.1 160 40.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.2e-14 84.3 159 37.1
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 5.8e-14 82.0 103 46.6
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 5.0e-13 79.0 159 35.8
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.4e-12 77.4 103 48.5
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 4.2e-12 75.9 157 35.7
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 7.1e-12 75.1 159 35.2
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.1e-11 72.0 81 53.1
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 6.1e-11 72.0 81 53.1
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 7.9e-11 71.6 100 47.0
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.0e-10 69.7 159 35.8
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 5.1e-10 68.9 157 35.7
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 8.7e-10 68.2 157 35.0
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.9e-09 67.0 57 61.4
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.5e-09 66.6 142 34.5
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 4.3e-09 65.9 69 49.3
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 1.3e-08 64.3 125 39.2
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 2.2e-08 63.5 103 41.7
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 5.3e-07 58.9 138 37.0
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 5.3e-07 58.9 138 37.0
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 9.0e-07 58.2 73 46.6
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 9.0e-07 58.2 73 46.6
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.2e-06 57.8 159 31.4
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.5e-06 55.8 75 52.0
Pp3c15_23810 Physcomitrium patens HOM05D024020 ORTHO05D023538 4.5e-06 55.8 128 35.9
Pp3c15_23812 Physcomitrium patens HOM05D024020 ORTHO05D023538 4.5e-06 55.8 128 35.9
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 5.9e-06 55.5 103 41.7
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 7.7e-06 55.1 47 61.7


User provided reference genes

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