Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 2.9e-42 174.9 92 100.0
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 4.4e-38 161.0 85 100.0
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 5.7e-38 160.6 90 93.3
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 6.3e-37 157.1 90 91.1
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 6.3e-37 157.1 90 91.1
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 5.7e-22 107.5 96 64.6
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.4e-20 102.8 96 61.5
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 1.8e-20 102.4 94 60.6
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.1e-20 101.3 97 60.8
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 4.1e-20 101.3 94 59.6
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 2.0e-19 99.0 96 60.4
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 4.5e-19 97.8 94 59.6
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 5.9e-19 97.4 89 61.8
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 1.7e-18 95.9 89 62.9
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 5.0e-18 94.4 98 59.2
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 8.5e-18 93.6 98 56.1
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.1e-17 93.2 94 56.4
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 5.5e-17 90.9 99 55.6
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 5.5e-17 90.9 98 55.1
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 9.5e-17 90.1 95 55.8
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 1.6e-16 89.4 94 54.3
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 2.8e-16 88.6 89 57.3
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.8e-16 88.6 97 55.7
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 4.7e-16 87.8 97 52.6
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 4.7e-16 87.8 99 56.6
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 4.7e-16 87.8 95 57.9
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 6.1e-16 87.4 90 60.0
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 6.1e-16 87.4 90 60.0
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 6.1e-16 87.4 90 60.0
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 6.1e-16 87.4 96 55.2
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 6.1e-16 87.4 89 59.6
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 8.0e-16 87.0 95 53.7
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 8.0e-16 87.0 91 54.9
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 8.0e-16 87.0 95 51.6
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.4e-15 86.3 97 53.6
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.4e-15 86.3 94 56.4
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 5.2e-15 84.3 94 54.3
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 6.8e-15 84.0 95 51.6
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 8.8e-15 83.6 94 52.1
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 1.2e-14 83.2 99 54.5
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 1.2e-14 83.2 98 51.0
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.2e-14 83.2 97 54.6
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.5e-14 82.8 92 55.4
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 2.0e-14 82.4 98 50.0
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 2.0e-14 82.4 95 54.7
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 3.4e-14 81.6 91 52.7
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 3.4e-14 81.6 96 51.0
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 5.7e-14 80.9 94 51.1
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 5.7e-14 80.9 95 54.7
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 7.5e-14 80.5 97 49.5
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 1.3e-13 79.7 98 51.0
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.3e-13 79.7 101 50.5
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.2e-13 79.0 93 52.7
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 2.2e-13 79.0 93 50.5
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.8e-13 78.6 95 54.7
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 3.7e-13 78.2 97 51.5
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 3.7e-13 78.2 96 51.0
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.7e-13 78.2 91 52.7
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 3.7e-13 78.2 94 48.9
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 4.9e-13 77.8 97 50.5
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 6.3e-13 77.4 97 49.5
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 8.3e-13 77.0 92 51.1
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 8.3e-13 77.0 91 46.2
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.1e-12 76.6 99 50.5
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 2.4e-12 75.5 86 54.7
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 3.1e-12 75.1 92 51.1
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 3.1e-12 75.1 90 52.2
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 3.1e-12 75.1 95 52.6
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 4.1e-12 74.7 96 53.1
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 5.4e-12 74.3 89 50.6
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 5.4e-12 74.3 89 50.6
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 5.4e-12 74.3 94 52.1
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 7.0e-12 73.9 92 50.0
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 9.2e-12 73.6 92 51.1
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 9.2e-12 73.6 92 53.3
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.2e-11 73.2 91 50.5
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 1.2e-11 73.2 89 50.6
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.6e-11 72.8 79 53.2
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 4.5e-11 71.2 92 47.8
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 5.9e-11 70.9 86 48.8
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 1.3e-10 69.7 92 46.7
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 1.7e-10 69.3 89 48.3
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 1.7e-10 69.3 86 46.5
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 3.8e-10 68.2 50 70.0
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.8e-10 68.2 91 53.8
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 5.0e-10 67.8 79 51.9
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 6.6e-10 67.4 83 48.2
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 6.6e-10 67.4 83 48.2
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 8.6e-10 67.0 88 47.7
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 8.6e-10 67.0 90 51.1
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 1.1e-09 66.6 84 48.8
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.1e-09 66.6 92 48.9
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 2.5e-09 65.5 79 46.8
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 3.3e-09 65.1 83 47.0
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 3.3e-09 65.1 47 68.1
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 1.2e-08 63.2 90 42.2
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 2.1e-08 62.4 89 44.9
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 3.6e-08 61.6 94 44.7
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 6.1e-08 60.8 85 54.1
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 1.0e-07 60.1 44 68.2
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.0e-07 60.1 89 46.1
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 1.0e-07 60.1 84 45.2
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 1.4e-07 59.7 41 63.4
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 1.8e-07 59.3 81 46.9
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 3.0e-07 58.5 86 44.2
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 3.0e-07 58.5 90 42.2
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 5.2e-07 57.8 31 77.4
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.2e-06 56.6 94 41.5
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 1.2e-06 56.6 79 45.6
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.5e-06 56.2 79 44.3
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 2.0e-06 55.8 90 44.4
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 2.0e-06 55.8 84 46.4
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 2.6e-06 55.5 76 53.9
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 3.4e-06 55.1 90 40.0
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 3.4e-06 55.1 82 40.2
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 4.4e-06 54.7 92 40.2
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 4.4e-06 54.7 75 41.3
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 4.4e-06 54.7 90 40.0
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 5.7e-06 54.3 59 47.5
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 9.8e-06 53.5 92 39.1
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 9.8e-06 53.5 59 49.2
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 9.8e-06 53.5 92 39.1
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 9.8e-06 53.5 36 66.7


User provided reference genes

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