Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G5256 Papaver somniferum HOM05D048358 ORTHO05D001848 8.4e-187 657.9 683 100.0
PSO541G4982 Papaver somniferum HOM05D048358 ORTHO05D001848 3.9e-123 446.4 684 79.4
PSO782G0611 Papaver somniferum HOM05D002243 ORTHO05D001848 8.3e-17 93.2 80 63.8
PSO832G2889 Papaver somniferum HOM05D002243 ORTHO05D001848 1.1e-16 92.8 80 63.8
Manes.18G052200 Manihot esculenta HOM05D002243 ORTHO05D001848 5.0e-14 84.0 129 44.2
Haze_21939 Corylus avellana HOM05D002243 ORTHO05D001848 1.5e-13 82.4 129 45.7
CiPaw.07G201100 Carya illinoinensis HOM05D002243 ORTHO05D001848 2.5e-13 81.6 193 43.5
Manes.05G185500 Manihot esculenta HOM05D002243 ORTHO05D001848 4.3e-13 80.9 128 42.2
CiPaw.08G028200 Carya illinoinensis HOM05D002243 ORTHO05D001848 1.2e-12 79.3 192 52.1
Dinv26979 Davidia involucrata HOM05D002243 ORTHO05D001848 2.3e-11 75.1 85 57.6
QL12p040753 Quercus lobata HOM05D002243 ORTHO05D001848 6.8e-11 73.6 86 54.7
Aqoxy6G01532 Aquilegia oxysepala HOM05D002243 ORTHO05D001848 8.9e-11 73.2 79 54.4
HPP92_015701 Vanilla planifolia HOM05D002243 ORTHO05D001848 8.9e-11 73.2 85 47.1
HPP92_026661 Vanilla planifolia HOM05D002243 ORTHO05D001848 8.9e-11 73.2 85 47.1
Oeu061818.1 Olea europaea HOM05D002243 ORTHO05D001848 1.2e-10 72.8 84 51.2
Prupe.1G544100 Prunus persica HOM05D002243 ORTHO05D001848 1.2e-10 72.8 81 54.3
Atru.chr13.906 Acer truncatum HOM05D002243 ORTHO05D001848 1.5e-10 72.4 125 42.4
Cfa013396 Carpinus fangiana HOM05D002243 ORTHO05D001848 1.5e-10 72.4 86 53.5
VMungo0251G3413 Vigna mungo HOM05D002243 ORTHO05D001848 1.5e-10 72.4 78 56.4
HanXRQChr09g0263091 Helianthus annuus HOM05D002243 ORTHO05D001848 2.0e-10 72.0 80 46.2
Oeu059798.2 Olea europaea HOM05D002243 ORTHO05D001848 2.6e-10 71.6 84 46.4
Potri.002G112800 Populus trichocarpa HOM05D002243 ORTHO05D001848 2.6e-10 71.6 129 41.9
Hma1.2p1_1953F.1_g308845 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 5.8e-10 70.5 86 53.5
Hma1.2p1_1953F.1_g308850 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 5.8e-10 70.5 86 53.5
Dinv01223 Davidia involucrata HOM05D002243 ORTHO05D001848 9.8e-10 69.7 128 43.8
Dinv44914 Davidia involucrata HOM05D002243 ORTHO05D001848 2.2e-09 68.6 129 48.1
RcHm_v2.0_Chr7g0232141 Rosa chinensis HOM05D002243 ORTHO05D001848 2.2e-09 68.6 83 44.6
Actinidia36403 Actinidia chinensis HOM05D002243 ORTHO05D001848 2.9e-09 68.2 127 48.0
Aqoxy5G01944 Aquilegia oxysepala HOM05D002243 ORTHO05D001848 4.9e-09 67.4 85 43.5
FAN18G0601 Fragaria x ananassa HOM05D002243 ORTHO05D001848 4.9e-09 67.4 81 45.7
TAR376G0696 Trochodendron aralioides HOM05D002243 ORTHO05D001848 4.9e-09 67.4 85 47.1
GSVIVG01006594001 Vitis vinifera HOM05D002243 ORTHO05D001848 4.9e-09 67.4 79 51.9
GSVIVG01037020001 Vitis vinifera HOM05D002243 ORTHO05D001848 4.9e-09 67.4 78 50.0
PGSC0003DMG400030665 Solanum tuberosum HOM05D002243 ORTHO05D001848 6.4e-09 67.0 85 47.1
FAN08G2076 Fragaria x ananassa HOM05D002243 ORTHO05D001848 8.3e-09 66.6 81 46.9
Nitab4.5_0000396g0020 Nicotiana tabacum HOM05D002243 ORTHO05D001848 8.3e-09 66.6 84 45.2
Solyc02g091890.3 Solanum lycopersicum HOM05D002243 ORTHO05D001848 8.3e-09 66.6 85 47.1
CSS0022177 Camellia sinensis var. sinensis HOM05D002243 ORTHO05D001848 1.1e-08 66.2 86 48.8
CSS0029796 Camellia sinensis var. sinensis HOM05D002243 ORTHO05D001848 1.1e-08 66.2 86 48.8
Ciclev10002567m.g Citrus clementina HOM05D002243 ORTHO05D001848 1.1e-08 66.2 117 41.0
Lj2A425T27 Lonicera japonica HOM05D002243 ORTHO05D001848 1.1e-08 66.2 82 46.3
Nitab4.5_0006325g0010 Nicotiana tabacum HOM05D002243 ORTHO05D001848 1.1e-08 66.2 84 45.2
Sopen02g036460 Solanum pennellii HOM05D002243 ORTHO05D001848 1.4e-08 65.9 139 44.6
FvH4_5g33410 Fragaria vesca HOM05D002243 ORTHO05D001848 1.9e-08 65.5 81 44.4
Medtr4g097790 Medicago truncatula HOM05D002243 ORTHO05D001848 1.9e-08 65.5 79 45.6
Sabra02G0089100 Salix brachista HOM05D002243 ORTHO05D001848 1.9e-08 65.5 129 40.3
Gohir.D06G024900 Gossypium hirsutum HOM05D002243 ORTHO05D001848 3.2e-08 64.7 130 39.2
Phvul.003G231700 Phaseolus vulgaris HOM05D002243 ORTHO05D001848 4.1e-08 64.3 78 48.7
MSTRG.22198 Avicennia marina HOM05D002243 ORTHO05D001848 5.4e-08 63.9 85 44.7
CSS0016364 Camellia sinensis var. sinensis HOM05D002243 ORTHO05D001848 5.4e-08 63.9 86 47.7
Gorai.010G029300 Gossypium raimondii HOM05D002243 ORTHO05D001848 5.4e-08 63.9 130 39.2
MD15G1395300 Malus domestica HOM05D002243 ORTHO05D001848 5.4e-08 63.9 190 44.2
Peaxi162Scf00096g00157 Petunia axillaris HOM05D002243 ORTHO05D001848 5.4e-08 63.9 84 41.7
ECA232G3326 Erigeron canadensis HOM05D002243 ORTHO05D001848 7.0e-08 63.5 80 43.8
Nitab4.5_0001477g0030 Nicotiana tabacum HOM05D002243 ORTHO05D001848 9.2e-08 63.2 140 32.9
HanXRQChr11g0323891 Helianthus annuus HOM05D002243 ORTHO05D001848 1.2e-07 62.8 81 39.5
Nn8g39099 Nelumbo nucifera HOM05D009800 ORTHO05D001848 1.6e-07 62.4 126 38.1
CAN.G1061.5 Capsicum annuum HOM05D002243 ORTHO05D001848 2.0e-07 62.0 85 44.7
COL.COLO4_35368 Corchorus olitorius HOM05D002243 ORTHO05D001848 2.0e-07 62.0 129 43.4
Lalb_Chr09g0329371 Lupinus albus HOM05D002243 ORTHO05D001848 2.0e-07 62.0 79 45.6
SGA_v2.0_scaffold121G33087 Striga asiatica HOM05D002243 ORTHO05D001848 2.0e-07 62.0 82 41.5
ATR0767G056 Amborella trichopoda HOM05D002243 ORTHO05D001848 2.7e-07 61.6 86 45.3
BcaNung04324 Brassica carinata HOM05D010391 ORTHO05D001848 2.7e-07 61.6 78 42.3
A03p62300 Brassica napus HOM05D010391 ORTHO05D001848 2.7e-07 61.6 80 42.5
BraA03t15271Z Brassica rapa HOM05D010391 ORTHO05D001848 2.7e-07 61.6 80 42.5
Migut.B00490 Erythranthe guttata HOM05D002243 ORTHO05D001848 2.7e-07 61.6 124 33.9
Gohir.A06G027500 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.7e-07 61.6 130 36.9
Lalb_Chr05g0220451 Lupinus albus HOM05D002243 ORTHO05D001848 2.7e-07 61.6 80 46.2
Psat4g088240 Pisum sativum HOM05D002243 ORTHO05D001848 2.7e-07 61.6 78 43.6
Rhsim10G0087400 Rhododendron simsii HOM05D002243 ORTHO05D001848 2.7e-07 61.6 85 45.9
Actinidia02430 Actinidia chinensis HOM05D002243 ORTHO05D001848 3.5e-07 61.2 83 43.4
BcaNung02923 Brassica carinata HOM05D010391 ORTHO05D001848 3.5e-07 61.2 80 41.2
DCAR_021931 Daucus carota HOM05D002243 ORTHO05D001848 3.5e-07 61.2 128 35.9
Atru.chr3.1086 Acer truncatum HOM05D002243 ORTHO05D001848 4.6e-07 60.8 73 53.4
BolC7t46430H Brassica oleracea HOM05D010391 ORTHO05D001848 4.6e-07 60.8 78 42.3
Eucgr.F02202 Eucalyptus grandis HOM05D002243 ORTHO05D001848 4.6e-07 60.8 72 50.0
HanXRQChr14g0447631 Helianthus annuus HOM05D002243 ORTHO05D001848 4.6e-07 60.8 78 42.3
MD02G1193800 Malus domestica HOM05D002243 ORTHO05D001848 4.6e-07 60.8 116 37.9
QL06p038195 Quercus lobata HOM05D002243 ORTHO05D001848 4.6e-07 60.8 120 39.2
ATR0705G057 Amborella trichopoda HOM05D002243 ORTHO05D001848 6.0e-07 60.5 124 37.1
Haze_03961 Corylus avellana HOM05D002243 ORTHO05D001848 6.0e-07 60.5 123 43.9
CsaV3_6G044480 Cucumis sativus L. HOM05D002243 ORTHO05D001848 6.0e-07 60.5 122 33.6
Lsat_1_v5_gn_6_108800 Lactuca sativa HOM05D002243 ORTHO05D001848 6.0e-07 60.5 85 44.7
Lj4C79T2 Lonicera japonica HOM05D002243 ORTHO05D001848 7.8e-07 60.1 128 37.5
CSS0017187 Camellia sinensis var. sinensis HOM05D003439 ORTHO05D004062 1.0e-06 59.7 70 47.1
CANSAT21G1644 Cannabis sativa HOM05D002243 ORTHO05D001848 1.0e-06 59.7 127 39.4
CDE04G0825 Ceratophyllum demersum HOM05D002243 ORTHO05D001848 1.0e-06 59.7 69 52.2
Duzib264G1092 Durio zibethinus HOM05D002243 ORTHO05D001848 1.0e-06 59.7 81 49.4
FvH4_1g18591 Fragaria vesca HOM05D002243 ORTHO05D001848 1.0e-06 59.7 126 40.5
FAN19G3209 Fragaria x ananassa HOM05D002243 ORTHO05D001848 1.0e-06 59.7 126 40.5
Glyma.17G157100 Glycine max HOM05D002243 ORTHO05D001848 1.0e-06 59.7 78 41.0
Lsat_1_v5_gn_4_159100 Lactuca sativa HOM05D002243 ORTHO05D001848 1.0e-06 59.7 83 43.4
ECA238G4103 Erigeron canadensis HOM05D002243 ORTHO05D001848 1.3e-06 59.3 87 39.1
Glyma.05G110000 Glycine max HOM05D002243 ORTHO05D001848 1.3e-06 59.3 78 39.7
Prupe.6G213200 Prunus persica HOM05D002243 ORTHO05D001848 1.3e-06 59.3 126 34.9
MSTRG.23645 Avicennia marina HOM05D002243 ORTHO05D001848 1.7e-06 58.9 77 42.9
MSTRG.2796 Avicennia marina HOM05D002243 ORTHO05D001848 1.7e-06 58.9 79 40.5
C07p59860 Brassica napus HOM05D010391 ORTHO05D001848 1.7e-06 58.9 78 42.3
Cfa006795 Carpinus fangiana HOM05D002243 ORTHO05D001848 1.7e-06 58.9 78 48.7
CiPaw.07G039400 Carya illinoinensis HOM05D002243 ORTHO05D001848 1.7e-06 58.9 127 46.5
Ca_11007_v3 Cicer arietinum L. HOM05D002243 ORTHO05D001848 1.7e-06 58.9 80 42.5
AL7G17720 Arabidopsis lyrata HOM05D010391 ORTHO05D001848 2.3e-06 58.5 87 43.7
Lsat_1_v5_gn_2_81560 Lactuca sativa HOM05D002243 ORTHO05D001848 2.3e-06 58.5 77 37.7
Lalb_Chr16g0385891 Lupinus albus HOM05D002243 ORTHO05D001848 2.3e-06 58.5 71 45.1
Medtr5g005430 Medicago truncatula HOM05D002243 ORTHO05D001848 2.3e-06 58.5 83 38.6
Oeu039769.1 Olea europaea HOM05D002243 ORTHO05D001848 2.3e-06 58.5 78 46.2
vmacro22263 Vaccinium macrocarpon HOM05D002243 ORTHO05D001848 2.3e-06 58.5 86 44.2
CDE02G1478 Ceratophyllum demersum HOM05D064956 ORTHO05D001848 3.0e-06 58.2 74 52.7
DCAR_019339 Daucus carota HOM05D002243 ORTHO05D001848 3.0e-06 58.2 77 46.8
Duzib147G0075 Durio zibethinus HOM05D002243 ORTHO05D001848 3.0e-06 58.2 127 36.2
SGA_v2.0_scaffold269G46251 Striga asiatica HOM05D002243 ORTHO05D001848 3.0e-06 58.2 118 33.1
Thecc.01G079600 Theobroma cacao HOM05D002243 ORTHO05D001848 3.0e-06 58.2 78 51.3
Thhalv10000072m.g Eutrema salsugineum HOM05D002243 ORTHO05D001848 3.9e-06 57.8 82 39.0
Lj4g0010467 Lotus japonicus HOM05D002243 ORTHO05D001848 3.9e-06 57.8 77 40.3
Ah.01g007180 Amaranthus hybridus HOM05D002243 ORTHO05D001848 5.0e-06 57.4 87 43.7
MSTRG.27769 Avicennia marina HOM05D002243 ORTHO05D001848 5.0e-06 57.4 86 44.2
CARHR114080 Cardamine hirsuta HOM05D002243 ORTHO05D001848 5.0e-06 57.4 83 41.0
Ciclev10025075m.g Citrus clementina HOM05D002243 ORTHO05D001848 5.0e-06 57.4 78 52.6
Eucgr.I00650 Eucalyptus grandis HOM05D002243 ORTHO05D001848 5.0e-06 57.4 122 39.3
Lj9P338T47 Lonicera japonica HOM05D002243 ORTHO05D001848 5.0e-06 57.4 79 44.3
AL4G12330 Arabidopsis lyrata HOM05D002243 ORTHO05D001848 6.6e-06 57.0 85 41.2
Carub.0007s0668 Capsella rubella HOM05D010391 ORTHO05D001848 6.6e-06 57.0 76 44.7
CDE07G0845 Ceratophyllum demersum HOM05D001149 ORTHO05D001848 6.6e-06 57.0 69 50.7
AUR62027035 Chenopodium quinoa HOM05D002243 ORTHO05D001848 6.6e-06 57.0 85 43.5
Cc07_g07600 Coffea canephora HOM05D023692 ORTHO05D001848 6.6e-06 57.0 85 41.2
Lalb_Chr06g0164961 Lupinus albus HOM05D002243 ORTHO05D001848 6.6e-06 57.0 79 40.5
Peaxi162Scf00016g03211 Petunia axillaris HOM05D002243 ORTHO05D001848 6.6e-06 57.0 86 41.9
Peaxi162Scf00152g00066 Petunia axillaris HOM05D002243 ORTHO05D001848 6.6e-06 57.0 86 40.7
SalBow6G2660 Salvia bowleyana HOM05D002243 ORTHO05D001848 6.6e-06 57.0 81 44.4
SalBow6G4432 Salvia bowleyana HOM05D002243 ORTHO05D001848 6.6e-06 57.0 81 44.4
SEGI_35164 Sequoiadendron giganteum HOM05D002243 ORTHO05D001848 6.6e-06 57.0 130 38.5
Aa31LG7G14010 Aethionema arabicum HOM05D002243 ORTHO05D001848 8.6e-06 56.6 78 47.4
arahy.Tifrunner.gnm1.ann1.2Q65GK Arachis hypogaea HOM05D002243 ORTHO05D001848 8.6e-06 56.6 81 39.5
arahy.Tifrunner.gnm1.ann1.XGM7WG Arachis hypogaea HOM05D002243 ORTHO05D001848 8.6e-06 56.6 81 39.5
MSTRG.20241 Avicennia marina HOM05D002243 ORTHO05D001848 8.6e-06 56.6 85 40.0
BraA01t00442Z Brassica rapa HOM05D010391 ORTHO05D001848 8.6e-06 56.6 84 39.3
Lj1g0019537 Lotus japonicus HOM05D002243 ORTHO05D001848 8.6e-06 56.6 83 38.6
Manes.10G087900 Manihot esculenta HOM05D002243 ORTHO05D001848 8.6e-06 56.6 81 39.5
Sopen01g049010 Solanum pennellii HOM05D002243 ORTHO05D001848 8.6e-06 56.6 110 37.3


User provided reference genes

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