Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G5197 Papaver somniferum HOM05D000147 ORTHO05D005311 6.2e-58 227.3 116 100.0
PSO170G3341 Papaver somniferum HOM05D000147 ORTHO05D005311 1.5e-35 152.9 92 90.2
PSO210G5900 Papaver somniferum HOM05D000147 ORTHO05D005311 3.7e-34 148.3 92 88.0
MSTRG.11456 Avicennia marina HOM05D000147 ORTHO05D005311 2.0e-16 89.4 103 48.5
Atru.chr11.1175 Acer truncatum HOM05D000147 ORTHO05D005311 1.0e-15 87.0 109 47.7
Sabra05G0077400 Salix brachista HOM05D000147 ORTHO05D005311 2.2e-15 85.9 114 49.1
Potri.007G069800 Populus trichocarpa HOM05D000147 ORTHO05D005311 1.1e-14 83.6 108 50.9
Solyc02g014350.4 Solanum lycopersicum HOM05D000147 ORTHO05D005311 2.5e-14 82.4 108 49.1
Eucgr.G02569 Eucalyptus grandis HOM05D000147 ORTHO05D005311 4.2e-14 81.6 110 47.3
Gohir.A12G134200 Gossypium hirsutum HOM05D000147 ORTHO05D005311 9.4e-14 80.5 112 48.2
Gohir.D12G137800 Gossypium hirsutum HOM05D000147 ORTHO05D005311 9.4e-14 80.5 112 48.2
Gorai.008G149300 Gossypium raimondii HOM05D000147 ORTHO05D005311 9.4e-14 80.5 112 48.2
Lj6C720G7 Lonicera japonica HOM05D000147 ORTHO05D005311 9.4e-14 80.5 110 47.3
Sopen02g003380 Solanum pennellii HOM05D000147 ORTHO05D005311 9.4e-14 80.5 108 48.1
MSTRG.23131 Avicennia marina HOM05D000147 ORTHO05D005311 1.6e-13 79.7 105 46.7
CAN.G157.20 Capsicum annuum HOM05D000147 ORTHO05D005311 4.7e-13 78.2 108 49.1
RcHm_v2.0_Chr4g0446611 Rosa chinensis HOM05D000147 ORTHO05D005311 8.0e-13 77.4 78 61.5
Nitab4.5_0000739g0030 Nicotiana tabacum HOM05D000147 ORTHO05D005311 1.0e-12 77.0 106 48.1
Actinidia04308 Actinidia chinensis HOM05D000147 ORTHO05D005311 2.3e-12 75.9 113 46.9
CsaV3_7G030550 Cucumis sativus L. HOM05D000147 ORTHO05D005311 3.0e-12 75.5 112 45.5
HanXRQChr15g0472181 Helianthus annuus HOM05D000147 ORTHO05D005311 6.8e-12 74.3 106 48.1
SalBow5G3528 Salvia bowleyana HOM05D000147 ORTHO05D005311 8.8e-12 73.9 106 47.2
AUR62032985 Chenopodium quinoa HOM05D000147 ORTHO05D005311 1.2e-11 73.6 109 45.9
Sabra07G0058100 Salix brachista HOM05D000083 ORTHO05D003582 1.2e-11 73.6 114 43.9
Sabra07G0058200 Salix brachista HOM05D000083 ORTHO05D003582 1.2e-11 73.6 114 43.9
SGA_v2.0_scaffold90G27912 Striga asiatica HOM05D000147 ORTHO05D005311 1.5e-11 73.2 105 46.7
AUR62017703 Chenopodium quinoa HOM05D000147 ORTHO05D005311 2.0e-11 72.8 109 43.1
Sabra07G0057200 Salix brachista HOM05D000147 ORTHO05D005311 2.0e-11 72.8 114 43.9
Potri.005G093300 Populus trichocarpa HOM05D000147 ORTHO05D005311 2.6e-11 72.4 110 46.4
CiPaw.05G168400 Carya illinoinensis HOM05D000147 ORTHO05D005311 3.4e-11 72.0 113 45.1
Migut.I00007 Erythranthe guttata HOM05D000147 ORTHO05D005311 3.4e-11 72.0 108 44.4
Peaxi162Scf00363g00615 Petunia axillaris HOM05D000147 ORTHO05D005311 4.4e-11 71.6 109 45.9
Carub.0001s3929 Capsella rubella HOM05D000147 ORTHO05D005311 5.7e-11 71.2 78 56.4
Haze_11748 Corylus avellana HOM05D000147 ORTHO05D005311 5.7e-11 71.2 113 46.0
AL1G57780 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 1.3e-10 70.1 78 55.1
Sabra07G0057800 Salix brachista HOM05D000147 ORTHO05D005311 1.3e-10 70.1 110 44.5
DCAR_002570 Daucus carota HOM05D000147 ORTHO05D005311 1.7e-10 69.7 70 58.6
Lsat_1_v5_gn_2_97540 Lactuca sativa HOM05D000147 ORTHO05D005311 1.7e-10 69.7 104 40.4
CANSAT64G1147 Cannabis sativa HOM05D000147 ORTHO05D005311 2.2e-10 69.3 110 47.3
Cfa008733 Carpinus fangiana HOM05D000147 ORTHO05D005311 2.2e-10 69.3 112 44.6
Ciclev10033876m.g Citrus clementina HOM05D000147 ORTHO05D005311 2.2e-10 69.3 104 43.3
ECA246G2622 Erigeron canadensis HOM05D000147 ORTHO05D005311 2.2e-10 69.3 106 43.4
EL10Ac9g22954 Beta vulgaris HOM05D000147 ORTHO05D005311 3.7e-10 68.6 110 40.9
PGR142G0037 Punica granatum HOM05D000147 ORTHO05D005311 4.8e-10 68.2 108 41.7
GSVIVG01012038001 Vitis vinifera HOM05D000147 ORTHO05D005311 4.8e-10 68.2 72 55.6
HPP92_013075 Vanilla planifolia HOM05D000147 ORTHO05D005311 6.3e-10 67.8 113 43.4
MELO3C023601.2 Cucumis melo HOM05D000147 ORTHO05D005311 8.3e-10 67.4 112 42.9
Sp1g37010 Schrenkiella parvula HOM05D000147 ORTHO05D005311 8.3e-10 67.4 78 55.1
Sed0010099 Sechium edule HOM05D000147 ORTHO05D005311 8.3e-10 67.4 108 42.6
Thecc.02G160800 Theobroma cacao HOM05D000147 ORTHO05D005311 8.3e-10 67.4 113 44.2
CDE06G0897 Ceratophyllum demersum HOM05D000147 ORTHO05D005311 1.1e-09 67.0 111 40.5
FAN07G2667 Fragaria x ananassa HOM05D000147 ORTHO05D005311 1.1e-09 67.0 114 46.5
vmacro10897 Vaccinium macrocarpon HOM05D000147 ORTHO05D005311 1.1e-09 67.0 113 39.8
ATR0564G231 Amborella trichopoda HOM05D000147 ORTHO05D005311 1.4e-09 66.6 116 40.5
Aqoxy6G00466 Aquilegia oxysepala HOM05D000147 ORTHO05D005311 1.4e-09 66.6 108 43.5
Phvul.011G030700 Phaseolus vulgaris HOM05D000147 ORTHO05D005311 1.4e-09 66.6 120 41.7
unitig_26.g9622 Utricularia gibba HOM05D000147 ORTHO05D005311 1.8e-09 66.2 104 44.2
Ah.01g012370 Amaranthus hybridus HOM05D000147 ORTHO05D005311 2.4e-09 65.9 105 43.8
A08p03310 Brassica napus HOM05D000147 ORTHO05D005311 2.4e-09 65.9 99 44.4
BraA08t32364Z Brassica rapa HOM05D000147 ORTHO05D005311 2.4e-09 65.9 99 44.4
Cc11_g00140 Coffea canephora HOM05D000147 ORTHO05D005311 2.4e-09 65.9 63 58.7
FvH4_4g36860 Fragaria vesca HOM05D000147 ORTHO05D005311 2.4e-09 65.9 114 45.6
TAR628G0689 Trochodendron aralioides HOM05D000147 ORTHO05D005311 2.4e-09 65.9 61 59.0
CiPaw.06G059800 Carya illinoinensis HOM05D000147 ORTHO05D005311 3.1e-09 65.5 67 58.2
COL.COLO4_08994 Corchorus olitorius HOM05D000147 ORTHO05D005311 3.1e-09 65.5 112 44.6
Duzib248G1409 Durio zibethinus HOM05D000147 ORTHO05D005311 3.1e-09 65.5 112 42.0
QL03p044068 Quercus lobata HOM05D000147 ORTHO05D005311 3.1e-09 65.5 113 43.4
Sabra07G0058600 Salix brachista HOM05D000147 ORTHO05D005311 3.1e-09 65.5 57 64.9
Sc10g0006770 Simmondsia chinensis HOM05D000147 ORTHO05D005311 4.1e-09 65.1 110 40.9
FAN17G2876 Fragaria x ananassa HOM05D000147 ORTHO05D005311 5.4e-09 64.7 63 60.3
Hund08554 Selenicereus undatus HOM05D000147 ORTHO05D005311 5.4e-09 64.7 108 40.7
AT1G50140 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 7.0e-09 64.3 57 63.2
BcaC01g01214 Brassica carinata HOM05D000147 ORTHO05D005311 7.0e-09 64.3 99 43.4
BolC3t21264H Brassica oleracea HOM05D000147 ORTHO05D005311 7.0e-09 64.3 99 43.4
Cpa.g.sc0.169 Carica papaya HOM05D000147 ORTHO05D005311 7.0e-09 64.3 113 39.8
ClCG09G004590 Citrullus lanatus HOM05D000147 ORTHO05D005311 7.0e-09 64.3 112 42.0
FAN12G4124 Fragaria x ananassa HOM05D000147 ORTHO05D005311 7.0e-09 64.3 86 53.5
HanXRQChr06g0171471 Helianthus annuus HOM05D000147 ORTHO05D005311 7.0e-09 64.3 46 67.4
Prupe.1G346700 Prunus persica HOM05D000147 ORTHO05D005311 7.0e-09 64.3 108 43.5
Zm00001eb194420 Zea mays HOM05D000147 ORTHO05D005311 7.0e-09 64.3 46 69.6
MBI05_g29097_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D005311 9.1e-09 63.9 122 36.9
TAR381G0407 Trochodendron aralioides HOM05D000147 ORTHO05D005311 9.1e-09 63.9 62 62.9
CSS0012305 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005311 1.2e-08 63.5 114 39.5
Lj3g0018243 Lotus japonicus HOM05D000147 ORTHO05D005311 1.2e-08 63.5 58 60.3
Nn5g28890 Nelumbo nucifera HOM05D000147 ORTHO05D005311 1.2e-08 63.5 61 57.4
Psat7g173240 Pisum sativum HOM05D000147 ORTHO05D005311 1.2e-08 63.5 119 41.2
AL3G33200 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 1.6e-08 63.2 110 41.8
CARHR095260 Cardamine hirsuta HOM05D000147 ORTHO05D005311 1.6e-08 63.2 43 69.8
VMungo1127G1912 Vigna mungo HOM05D000147 ORTHO05D005311 2.0e-08 62.8 120 36.7
AT3G19740 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 2.7e-08 62.4 47 68.1
C03p89500 Brassica napus HOM05D000147 ORTHO05D005311 2.7e-08 62.4 99 45.5
Carub.0003s1961 Capsella rubella HOM05D000147 ORTHO05D005311 2.7e-08 62.4 110 40.9
Manes.02G219800 Manihot esculenta HOM05D000147 ORTHO05D005311 3.5e-08 62.0 113 40.7
Sp3g17770 Schrenkiella parvula HOM05D000147 ORTHO05D005311 3.5e-08 62.0 55 61.8
THA.LOC104826507 Tarenaya hassleriana HOM05D000147 ORTHO05D005311 3.5e-08 62.0 78 52.6
Ah.01g001490 Amaranthus hybridus HOM05D000147 ORTHO05D005311 4.5e-08 61.6 50 66.0
MD13G1006500 Malus domestica HOM05D000147 ORTHO05D005311 4.5e-08 61.6 44 72.7
Rhsim09G0074800 Rhododendron simsii HOM05D000147 ORTHO05D005311 4.5e-08 61.6 58 56.9
Ca_19029_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005311 5.9e-08 61.2 120 35.0
Thhalv10011206m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 5.9e-08 61.2 78 51.3
Glyma.12G027500 Glycine max HOM05D000147 ORTHO05D005311 5.9e-08 61.2 120 39.2
Duzib132G0553 Durio zibethinus HOM05D000147 ORTHO05D005311 7.7e-08 60.8 114 40.4
Lalb_Chr03g0024801 Lupinus albus HOM05D000147 ORTHO05D005311 7.7e-08 60.8 117 36.8
TPR.G32339 Trifolium pratense HOM05D000147 ORTHO05D005311 7.7e-08 60.8 60 51.7
Aa31LG8G6540 Aethionema arabicum HOM05D000147 ORTHO05D005311 1.0e-07 60.5 57 59.6
Oeu016388.3 Olea europaea HOM05D000147 ORTHO05D005311 1.0e-07 60.5 63 54.0
CARHR040190 Cardamine hirsuta HOM05D000147 ORTHO05D005311 1.3e-07 60.1 58 58.6
SEGI_13050 Sequoiadendron giganteum HOM05D000147 ORTHO05D005311 1.3e-07 60.1 49 67.3
TWI77G0661 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 1.3e-07 60.1 118 36.4
arahy.Tifrunner.gnm1.ann1.6GN5UX Arachis hypogaea HOM05D000147 ORTHO05D005311 1.7e-07 59.7 55 60.0
arahy.Tifrunner.gnm1.ann1.7MKI8I Arachis hypogaea HOM05D000147 ORTHO05D005311 1.7e-07 59.7 55 60.0
Glyma.11G101600 Glycine max HOM05D000147 ORTHO05D005311 1.7e-07 59.7 120 39.2
Thhalv10019988m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 2.3e-07 59.3 100 42.0
Medtr4g074920 Medicago truncatula HOM05D000147 ORTHO05D005311 2.3e-07 59.3 70 52.9
Aa31LG10G4010 Aethionema arabicum HOM05D000147 ORTHO05D005311 2.9e-07 58.9 49 65.3
A01p34960 Brassica napus HOM05D000147 ORTHO05D005311 2.9e-07 58.9 47 63.8
C01p44370 Brassica napus HOM05D000147 ORTHO05D005311 2.9e-07 58.9 47 63.8
BolC1t04402H Brassica oleracea HOM05D000147 ORTHO05D005311 2.9e-07 58.9 47 63.8
BraA01t03579Z Brassica rapa HOM05D000147 ORTHO05D005311 2.9e-07 58.9 47 63.8
Sed0001066 Sechium edule HOM05D000147 ORTHO05D005311 5.0e-07 58.2 47 66.0
MD16G1001500 Malus domestica HOM05D000147 ORTHO05D005311 6.6e-07 57.8 109 41.3
PSO541G5327 Papaver somniferum HOM05D000147 ORTHO05D005311 8.6e-07 57.4 52 55.8
PSO675G6018 Papaver somniferum HOM05D000147 ORTHO05D005311 8.6e-07 57.4 52 55.8
TWI74G0983 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 8.6e-07 57.4 114 36.0
Lalb_Chr19g0139371 Lupinus albus HOM05D000147 ORTHO05D005311 1.9e-06 56.2 117 33.3
Migut.D01932 Erythranthe guttata HOM05D000147 ORTHO05D005311 7.2e-06 54.3 60 51.7


User provided reference genes

Program Settings