Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 0.0e+00 1087.4 559 100.0
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.5e-295 1018.8 559 94.1
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 7.9e-183 644.4 569 60.3
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 1.1e-179 634.0 570 58.6
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 4.1e-179 632.1 561 59.9
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 8.5e-177 624.4 552 61.1
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 3.7e-172 609.0 561 58.5
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 3.4e-170 602.4 571 59.4
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 6.5e-169 598.2 584 57.4
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 8.5e-169 597.8 562 58.9
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 4.7e-167 592.0 567 56.4
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 5.1e-166 588.6 573 56.0
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 2.6e-165 586.3 569 56.6
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 7.0e-163 578.2 537 58.1
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 9.1e-163 577.8 566 55.8
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 5.0e-161 572.0 428 68.9
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 4.7e-159 565.5 555 54.8
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.4e-158 563.9 558 55.7
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 1.4e-158 563.9 560 55.7
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 1.5e-157 560.5 574 53.5
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 2.6e-157 559.7 560 55.4
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 4.4e-157 558.9 564 54.8
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 4.4e-157 558.9 573 55.7
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 6.3e-156 555.1 564 54.4
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 2.0e-154 550.1 568 54.0
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 3.5e-154 549.3 562 53.9
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 3.5e-154 549.3 562 53.9
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.7e-153 547.0 561 55.1
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 3.8e-153 545.8 568 54.6
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 1.0e-150 537.7 559 53.3
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 5.2e-150 535.4 553 54.2
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 2.0e-149 533.5 602 52.3
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 2.8e-148 529.6 575 52.9
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 4.1e-147 525.8 549 53.2
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 5.9e-146 521.9 573 52.5
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 5.0e-145 518.8 423 62.2
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 2.6e-141 506.5 555 50.6
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 7.7e-138 495.0 559 50.1
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 1.5e-136 490.7 490 55.5
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 3.0e-134 483.0 498 55.6
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 4.4e-133 479.2 630 46.3
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 7.8e-130 468.4 559 48.7
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 5.0e-129 465.7 568 50.0
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 3.3e-128 463.0 658 44.1
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 6.1e-127 458.8 629 44.7
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 3.1e-126 456.4 707 40.7
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 5.2e-126 455.7 713 40.8
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 4.9e-124 449.1 421 55.8
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 4.0e-118 429.5 431 52.2
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 8.6e-113 411.8 424 53.3
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 2.1e-111 407.1 421 50.8
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 6.0e-106 389.0 432 50.7
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 6.0e-106 389.0 437 50.3
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.3e-97 361.3 351 55.6
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 2.4e-94 350.5 423 48.2
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 5.3e-94 349.4 269 66.2
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 6.4e-92 342.4 294 56.8
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 2.3e-89 334.0 547 38.8
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 5.8e-85 319.3 564 38.1
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 2.7e-82 310.5 420 43.8
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 7.1e-75 285.8 217 66.4
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 1.1e-72 278.5 408 40.7
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 1.1e-67 261.9 462 35.5
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 1.4e-57 228.4 184 64.7
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 2.9e-44 184.1 192 51.0
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 3.1e-38 164.1 131 64.9
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 4.2e-35 153.7 155 49.0
GSVIVG01037970001 Vitis vinifera HOM05D007837 ORTHO05D009965 5.7e-32 143.3 102 71.6
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 1.7e-31 141.7 115 62.6
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 2.8e-31 141.0 105 67.6
Medtr4g035220 Medicago truncatula HOM05D007837 ORTHO05D009965 3.1e-30 137.5 126 60.3
Glyma.03G069100 Glycine max HOM05D007837 ORTHO05D009965 5.0e-28 130.2 172 45.3
Oeu008971.1 Olea europaea HOM05D007837 ORTHO05D009965 4.4e-24 117.1 101 60.4
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 1.4e-22 112.1 68 77.9
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.6e-20 103.2 289 29.4
Hma1.2p1_0410F.1_g147000 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 1.9e-19 101.7 204 32.8
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 4.2e-19 100.5 64 76.6
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 7.2e-19 99.8 64 76.6
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.7e-18 97.1 240 30.0
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.7e-18 97.1 234 29.1
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.7e-18 97.1 234 29.1
MCO10G143 Micromonas commoda HOM05D007837 ORTHO05D009965 3.7e-15 87.4 452 23.9
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 3.7e-15 87.4 247 27.5
Mapoly0020s0028 Marchantia polymorpha HOM05D007670 ORTHO05D009646 1.0e-12 79.3 281 25.3
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.3e-12 79.0 326 25.5
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 3.9e-12 77.4 267 26.6
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 3.9e-12 77.4 257 28.0
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 5.0e-12 77.0 249 27.3
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 5.0e-12 77.0 266 25.9
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 5.0e-12 77.0 265 26.4
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 5.0e-12 77.0 215 28.4
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 8.6e-12 76.3 231 27.7
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 8.6e-12 76.3 257 23.3
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 1.1e-11 75.9 332 24.1
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 1.5e-11 75.5 313 24.6
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.5e-11 75.5 225 26.2
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 2.5e-11 74.7 234 25.2
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 3.3e-11 74.3 68 57.4
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 4.3e-11 73.9 253 26.1
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 4.3e-11 73.9 263 25.9
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 5.6e-11 73.6 266 25.6
Cpa.g.sc192.14 Carica papaya HOM05D007837 ORTHO05D009965 7.3e-11 73.2 58 65.5
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 9.5e-11 72.8 332 23.8
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 9.5e-11 72.8 332 23.8
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 1.2e-10 72.4 284 24.6
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 1.6e-10 72.0 219 26.0
Sabra11G0145800 Salix brachista HOM05D007837 ORTHO05D009965 1.6e-10 72.0 149 34.2
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 1.6e-10 72.0 257 24.1
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 2.1e-10 71.6 235 24.3
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 2.8e-10 71.2 256 27.0
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 2.8e-10 71.2 218 27.1
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 2.8e-10 71.2 255 25.1
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 3.6e-10 70.9 277 23.8
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 6.2e-10 70.1 272 25.0
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 6.2e-10 70.1 240 25.0
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 6.2e-10 70.1 332 23.5
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 6.2e-10 70.1 221 25.3
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 6.2e-10 70.1 42 76.2
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 8.0e-10 69.7 215 27.0
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 8.0e-10 69.7 264 25.8
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 8.0e-10 69.7 268 24.6
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 8.0e-10 69.7 268 26.1
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.0e-09 69.3 220 25.0
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.0e-09 69.3 286 23.4
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 1.4e-09 68.9 269 23.8
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 1.8e-09 68.6 353 24.1
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.8e-09 68.6 228 25.4
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 1.8e-09 68.6 296 23.6
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 3.1e-09 67.8 229 25.8
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 6.8e-09 66.6 270 23.0
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 6.8e-09 66.6 278 25.2
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 1.5e-08 65.5 231 27.7
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 2.0e-08 65.1 278 23.4
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 2.0e-08 65.1 200 27.5
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 2.6e-08 64.7 221 24.0
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 2.6e-08 64.7 118 30.5
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 3.4e-08 64.3 240 22.9
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 3.4e-08 64.3 256 23.8
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 7.5e-08 63.2 254 23.2
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 9.8e-08 62.8 242 26.0
Os01g0909300 Oryza sativa ssp. japonica HOM05D007670 ORTHO05D009646 1.7e-07 62.0 129 30.2
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 1.7e-07 62.0 276 24.6
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 3.7e-07 60.8 195 27.2
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 4.9e-07 60.5 240 23.3
Potri.015G084300 Populus trichocarpa HOM05D007670 ORTHO05D009646 4.9e-07 60.5 244 23.4
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 1.9e-06 58.5 222 23.9
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 1.9e-06 58.5 128 28.1
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 2.4e-06 58.2 198 24.7
Gorai.003G106900 Gossypium raimondii HOM05D007670 ORTHO05D009646 2.4e-06 58.2 128 28.1
SEGI_26529 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 9.2e-06 56.2 78 37.2


User provided reference genes

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