Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 4.1e-164 581.3 277 100.0
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 7.2e-153 543.9 277 93.5
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 8.9e-95 350.9 281 61.9
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 2.7e-91 339.3 272 60.3
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 3.3e-89 332.4 280 59.6
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 4.8e-88 328.6 289 57.8
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 1.1e-87 327.4 289 57.4
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.5e-86 323.6 276 56.5
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 8.4e-85 317.8 276 55.8
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 3.2e-84 315.8 273 56.4
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 2.1e-83 313.2 270 56.7
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.5e-83 312.4 284 56.7
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 3.5e-83 312.4 268 57.1
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 6.0e-83 311.6 267 57.3
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 6.0e-83 311.6 267 55.8
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 7.9e-83 311.2 270 55.9
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.3e-82 309.7 260 57.3
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 3.0e-82 309.3 271 55.0
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 3.0e-82 309.3 282 54.3
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.1e-81 307.4 269 58.7
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 1.1e-81 307.4 281 54.8
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 2.5e-81 306.2 268 57.1
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 6.2e-80 301.6 270 55.6
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 8.1e-80 301.2 272 55.1
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 1.1e-79 300.8 284 52.5
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 1.1e-79 300.8 260 57.3
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 1.8e-79 300.1 274 55.1
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 1.8e-79 300.1 275 53.8
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 4.0e-79 298.9 277 53.8
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 4.0e-79 298.9 262 54.6
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 4.0e-79 298.9 283 54.4
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 5.3e-79 298.5 298 51.0
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 5.3e-79 298.5 280 54.6
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 4.5e-78 295.4 268 54.9
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 5.8e-78 295.0 260 55.4
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 7.6e-78 294.7 276 53.3
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 1.3e-77 293.9 261 55.9
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 1.3e-77 293.9 268 53.4
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 1.3e-77 293.9 281 53.7
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 1.7e-77 293.5 270 54.4
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 2.9e-77 292.7 260 55.4
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.9e-77 292.7 271 54.2
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 3.8e-77 292.4 272 52.6
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 3.8e-77 292.4 272 52.6
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 4.9e-77 292.0 277 52.0
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 4.9e-77 292.0 267 54.7
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 6.4e-77 291.6 272 52.2
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 6.4e-77 291.6 282 52.8
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 8.4e-77 291.2 261 54.0
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 8.4e-77 291.2 261 54.0
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.9e-76 290.0 259 56.0
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 1.9e-76 290.0 271 53.1
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.9e-76 290.0 270 52.6
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 2.4e-76 289.7 271 55.0
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 3.2e-76 289.3 268 54.9
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.2e-76 288.9 266 54.1
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 4.2e-76 288.9 255 55.3
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 4.2e-76 288.9 266 53.0
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 5.5e-76 288.5 259 55.2
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.2e-75 287.3 285 50.5
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.6e-75 287.0 268 52.2
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 2.1e-75 286.6 259 54.4
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 2.1e-75 286.6 259 54.4
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.1e-75 286.6 267 54.3
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.1e-75 286.6 266 54.1
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 2.7e-75 286.2 283 52.7
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.7e-75 286.2 271 51.3
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 2.7e-75 286.2 272 54.0
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 3.5e-75 285.8 257 55.3
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 3.5e-75 285.8 257 55.3
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 3.5e-75 285.8 269 53.2
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 3.5e-75 285.8 259 53.3
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 1.0e-74 284.3 289 52.9
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.3e-74 283.9 259 54.1
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.3e-74 283.9 262 54.2
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.3e-74 283.9 267 50.2
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 3.9e-74 282.3 300 49.7
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 3.9e-74 282.3 257 54.9
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 8.7e-74 281.2 264 55.7
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 1.1e-73 280.8 270 52.2
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 9.6e-73 277.7 281 50.5
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 6.2e-72 275.0 244 54.5
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 1.8e-71 273.5 266 51.9
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.8e-71 273.5 281 49.5
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.4e-71 273.1 274 53.6
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 4.0e-71 272.3 264 52.3
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 3.8e-69 265.8 262 51.1
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 8.4e-69 264.6 258 51.6
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 5.5e-68 261.9 255 52.9
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 1.2e-67 260.8 254 50.0
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 2.3e-66 256.5 279 47.3
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 9.6e-65 251.1 274 49.3
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 9.6e-65 251.1 276 48.2
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 4.8e-64 248.8 216 56.5
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 4.8e-64 248.8 242 54.1
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 6.3e-64 248.4 247 50.6
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 4.1e-63 245.7 267 47.6
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 1.2e-62 244.2 214 54.7
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.2e-62 244.2 235 52.8
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.0e-61 241.1 261 48.7
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 1.0e-61 241.1 299 45.2
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.7e-61 240.4 274 48.2
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 8.5e-61 238.0 302 42.7
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 2.7e-59 233.0 335 38.2
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 9.7e-57 224.6 269 42.0
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.8e-56 223.0 273 42.5
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 4.1e-55 219.2 260 45.8
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 5.0e-53 212.2 280 42.9
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-49 201.1 217 47.9
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-49 201.1 217 47.9
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 2.0e-49 200.3 193 51.8
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 2.2e-48 196.8 286 37.8
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 6.3e-48 195.3 214 47.2
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.8e-47 193.7 214 47.2
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.1e-47 193.0 200 51.5
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 4.1e-47 192.6 203 49.8
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.9e-45 186.4 221 44.8
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.8e-45 186.0 265 40.0
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.0e-41 173.7 124 66.9
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 4.4e-41 172.6 206 45.6
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 8.2e-40 168.3 441 29.0
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.6e-38 164.1 242 38.0
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 2.5e-36 156.8 145 55.9
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 2.3e-34 150.2 296 30.7
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 7.5e-33 145.2 353 31.2
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.8e-31 140.6 168 45.8
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 5.5e-28 129.0 161 41.6
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 8.8e-26 121.7 333 29.1
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.7e-24 116.3 384 24.7
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 4.8e-24 115.9 73 71.2
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 8.3e-24 115.2 160 43.1
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 1.4e-23 114.4 150 42.0
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 1.2e-22 111.3 150 41.3
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 2.2e-21 107.1 158 42.4
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.5e-20 103.6 199 35.7
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 1.2e-19 101.3 66 69.7
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.1e-19 100.5 170 37.6
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.5e-17 92.0 57 64.9
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.1e-15 88.2 53 71.7
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 5.6e-12 75.9 132 34.8
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.1e-11 73.9 46 71.7
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.0e-09 67.4 57 52.6
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 5.9e-06 55.8 38 57.9
Nitab4.5_0001706g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.9e-06 55.8 28 78.6
Haze_02522 Corylus avellana HOM05D004971 ORTHO05D006289 7.8e-06 55.5 89 34.8


User provided reference genes

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