Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 1.8e-150 535.8 252 100.0
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 1.2e-149 533.1 252 99.2
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.1e-131 473.4 251 84.5
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 1.1e-131 473.4 251 85.3
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 4.1e-131 471.5 251 84.1
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 4.1e-131 471.5 250 84.0
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 5.4e-131 471.1 251 84.5
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 9.2e-131 470.3 251 83.7
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 1.2e-130 469.9 250 83.6
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.1e-130 469.2 251 83.7
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 2.1e-130 469.2 265 82.3
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 2.7e-130 468.8 249 83.5
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 4.6e-130 468.0 251 84.1
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.0e-129 466.8 251 83.7
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 1.7e-129 466.1 247 84.2
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 3.0e-129 465.3 249 84.7
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 3.9e-129 464.9 250 82.8
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 6.6e-129 464.2 249 83.1
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 6.6e-129 464.2 251 83.3
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 1.1e-128 463.4 251 82.5
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 1.1e-128 463.4 250 82.8
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 1.5e-128 463.0 252 82.5
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 1.9e-128 462.6 251 82.1
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 2.5e-128 462.2 251 82.5
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 3.3e-128 461.8 251 82.1
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 5.6e-128 461.1 249 82.7
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 1.2e-127 459.9 250 82.4
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 2.8e-127 458.8 282 76.2
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 3.6e-127 458.4 250 81.2
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 3.6e-127 458.4 248 81.5
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 6.2e-127 457.6 249 81.9
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 6.2e-127 457.6 251 80.5
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 1.1e-126 456.8 246 82.9
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 1.1e-126 456.8 251 81.3
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 1.4e-126 456.4 250 82.4
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 1.4e-126 456.4 246 82.5
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 1.4e-126 456.4 251 80.9
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 2.3e-126 455.7 251 81.7
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 2.3e-126 455.7 248 81.5
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 2.3e-126 455.7 282 75.9
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 2.3e-126 455.7 249 81.1
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 2.3e-126 455.7 249 81.1
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 4.0e-126 454.9 250 79.2
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 5.2e-126 454.5 250 82.8
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 5.2e-126 454.5 250 81.6
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 6.8e-126 454.1 251 79.7
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 6.8e-126 454.1 251 79.7
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 6.8e-126 454.1 251 81.3
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 6.8e-126 454.1 251 81.3
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 6.8e-126 454.1 251 81.3
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 6.8e-126 454.1 246 83.3
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 1.2e-125 453.4 250 80.4
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 1.2e-125 453.4 246 80.5
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 1.2e-125 453.4 250 82.4
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 1.5e-125 453.0 248 81.9
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 2.0e-125 452.6 251 80.9
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 2.6e-125 452.2 247 81.0
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 2.6e-125 452.2 247 81.0
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 3.4e-125 451.8 250 80.8
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 9.9e-125 450.3 246 81.7
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 9.9e-125 450.3 245 81.6
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 9.9e-125 450.3 251 80.9
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 1.7e-124 449.5 249 82.3
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 2.9e-124 448.7 251 79.7
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 2.9e-124 448.7 250 79.2
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 3.7e-124 448.4 250 82.0
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 3.7e-124 448.4 251 79.7
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 6.4e-124 447.6 246 81.3
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 8.3e-124 447.2 250 80.4
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 1.1e-123 446.8 250 81.2
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 1.1e-123 446.8 251 77.7
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 1.9e-123 446.0 250 80.0
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 2.4e-123 445.7 251 80.5
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 2.4e-123 445.7 250 80.4
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 4.1e-123 444.9 249 79.1
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 4.1e-123 444.9 250 78.4
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 4.1e-123 444.9 251 78.1
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 7.1e-123 444.1 250 78.4
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 7.1e-123 444.1 250 79.6
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 9.2e-123 443.7 250 80.4
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 9.2e-123 443.7 251 78.5
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 1.2e-122 443.4 250 80.4
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 2.7e-122 442.2 250 80.4
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 6.0e-122 441.0 241 80.9
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 6.0e-122 441.0 250 80.0
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 6.0e-122 441.0 250 80.0
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 6.0e-122 441.0 250 80.0
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 7.8e-122 440.7 250 80.0
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 1.0e-121 440.3 249 78.7
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 1.0e-121 440.3 250 78.4
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.7e-121 439.5 250 78.4
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 3.0e-121 438.7 250 79.6
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 6.6e-121 437.6 245 78.4
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.1e-120 436.8 249 77.5
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 1.9e-120 436.0 251 77.3
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 1.9e-120 436.0 251 77.3
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 2.5e-120 435.6 251 80.9
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 5.6e-120 434.5 251 80.5
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 2.1e-119 432.6 247 77.7
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 2.8e-119 432.2 251 78.9
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 1.1e-118 430.3 251 79.3
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 1.4e-118 429.9 275 70.9
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 1.8e-118 429.5 251 79.3
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 1.8e-118 429.5 251 79.3
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 1.8e-118 429.5 251 79.3
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 1.2e-117 426.8 233 80.3
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 9.9e-117 423.7 311 65.0
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 1.7e-116 422.9 229 83.0
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 3.8e-116 421.8 249 78.3
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 8.4e-116 420.6 246 75.2
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.0e-113 413.7 251 75.7
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 3.0e-113 412.1 253 76.7
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 2.4e-110 402.5 245 72.2
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 2.0e-109 399.4 248 71.0
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 1.3e-108 396.7 248 69.0
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 1.7e-108 396.4 243 69.1
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.4e-107 393.3 220 78.2
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.9e-107 392.9 220 78.2
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 1.9e-107 392.9 237 76.4
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.5e-104 383.3 249 69.1
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 4.3e-104 381.7 245 66.9
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 7.3e-104 380.9 242 67.8
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 8.1e-103 377.5 233 77.3
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 9.3e-99 364.0 248 66.5
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 3.5e-98 362.1 251 68.1
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.8e-97 359.8 208 79.3
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 6.9e-94 347.8 242 62.0
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 7.6e-93 344.4 199 77.9
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 1.3e-76 290.4 172 76.7
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 5.5e-75 285.0 172 74.4
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 9.7e-72 274.2 245 55.5
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 1.5e-69 266.9 136 84.6
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 4.7e-58 228.8 113 88.5
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 3.9e-57 225.7 167 67.7
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 1.4e-54 217.2 190 58.9
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 9.1e-54 214.5 211 50.2
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 2.2e-52 209.9 120 80.8
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-51 206.1 154 55.8
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 9.4e-43 177.9 96 81.2
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 3.7e-39 166.0 142 58.5
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 3.7e-39 166.0 223 43.9
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 1.4e-38 164.1 185 44.9
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 5.4e-38 162.2 86 79.1
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 1.7e-28 130.6 82 73.2
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 3.3e-27 126.3 71 78.9
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 9.5e-27 124.8 71 78.9
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 3.6e-26 122.9 59 83.1
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 5.0e-20 102.4 52 84.6
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 9.5e-19 98.2 50 90.0
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 2.1e-18 97.1 49 75.5
Cfa025962 Carpinus fangiana HOM05D004928 ORTHO05D005901 1.7e-15 87.4 269 25.7
Gohir.A12G165600 Gossypium hirsutum HOM05D002775 ORTHO05D003262 8.9e-09 65.1 212 25.0
Gohir.D12G168700 Gossypium hirsutum HOM05D002775 ORTHO05D003262 8.9e-09 65.1 212 25.0
Gorai.008G181500 Gossypium raimondii HOM05D002775 ORTHO05D003262 8.9e-09 65.1 212 25.0
Psat2g121200 Pisum sativum HOM05D002775 ORTHO05D003262 1.5e-08 64.3 208 25.0
TPR.G37102 Trifolium pratense HOM05D002775 ORTHO05D003262 2.6e-08 63.5 218 24.3
Zm00001eb414970 Zea mays HOM05D002775 ORTHO05D003262 2.6e-08 63.5 208 25.5
Lj2g0025171 Lotus japonicus HOM05D002775 ORTHO05D003262 3.4e-08 63.2 213 24.9
COL.COLO4_22991 Corchorus olitorius HOM05D002775 ORTHO05D003262 5.8e-08 62.4 203 26.1
Haze_02353 Corylus avellana HOM05D000141 ORTHO05D011061 9.9e-08 61.6 98 42.9
Sabra10G0066200 Salix brachista HOM05D002775 ORTHO05D003262 1.3e-07 61.2 214 23.4
arahy.Tifrunner.gnm1.ann1.7KL7FE Arachis hypogaea HOM05D002775 ORTHO05D003262 2.2e-07 60.5 211 23.7
arahy.Tifrunner.gnm1.ann1.BG5WH1 Arachis hypogaea HOM05D002775 ORTHO05D003262 2.2e-07 60.5 208 23.1
Thecc.02G350700 Theobroma cacao HOM05D002775 ORTHO05D003262 3.7e-07 59.7 203 25.6
Sc04g0008210 Simmondsia chinensis HOM05D002775 ORTHO05D003262 4.9e-07 59.3 205 24.9
TWI12G0226 Tripterygium wilfordii HOM05D002775 ORTHO05D003262 4.9e-07 59.3 203 24.6
Hund05890 Selenicereus undatus HOM05D002775 ORTHO05D003262 6.4e-07 58.9 203 23.6
Ca_04781_v3 Cicer arietinum L. HOM05D002775 ORTHO05D003262 8.3e-07 58.5 203 23.6
Medtr7g039510 Medicago truncatula HOM05D002775 ORTHO05D003262 8.3e-07 58.5 205 26.3
Nn3g17211 Nelumbo nucifera HOM05D002775 ORTHO05D003262 8.3e-07 58.5 138 26.8
VMungo1215G1815 Vigna mungo HOM05D002775 ORTHO05D003262 8.3e-07 58.5 203 24.6
Phvul.002G086200 Phaseolus vulgaris HOM05D002775 ORTHO05D003262 1.1e-06 58.2 203 24.1
Potri.010G093900 Populus trichocarpa HOM05D002775 ORTHO05D003262 1.1e-06 58.2 219 22.8
Duzib251G0721 Durio zibethinus HOM05D002775 ORTHO05D003262 1.4e-06 57.8 204 23.5
Ciclev10032480m.g Citrus clementina HOM05D002775 ORTHO05D003262 1.9e-06 57.4 219 23.7
Lalb_Chr10g0098201 Lupinus albus HOM05D002775 ORTHO05D003262 1.9e-06 57.4 203 24.6
Hma1.2p1_0598F.1_g186650 Hydrangea macrophylla HOM05D002775 ORTHO05D003262 2.4e-06 57.0 203 21.7
Zm00001eb110760 Zea mays HOM05D002775 ORTHO05D003262 3.2e-06 56.6 138 32.6
CSS0003680 Camellia sinensis var. sinensis HOM05D002775 ORTHO05D003262 4.1e-06 56.2 139 29.5
CDE05G2768 Ceratophyllum demersum HOM05D002775 ORTHO05D003262 5.4e-06 55.8 118 27.1
ECA233G2285 Erigeron canadensis HOM05D002775 ORTHO05D003262 5.4e-06 55.8 204 21.6
Medtr5g040090 Medicago truncatula HOM05D002775 ORTHO05D003262 5.4e-06 55.8 205 25.9
Rhsim12G0062200 Rhododendron simsii HOM05D002775 ORTHO05D003262 5.4e-06 55.8 194 22.7


User provided reference genes

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