Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 6.8e-263 910.2 492 100.0
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 3.4e-254 881.3 493 97.6
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.1e-185 653.7 495 75.2
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.3e-183 644.8 506 73.3
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.2e-182 643.7 508 72.6
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.3e-181 640.2 500 73.8
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.3e-181 640.2 507 72.4
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 8.5e-181 637.5 509 71.5
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 9.4e-180 634.0 506 72.5
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 2.2e-176 622.9 507 70.2
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 4.8e-176 621.7 509 70.3
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 8.2e-176 620.9 493 70.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 8.2e-176 620.9 493 70.6
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.3e-175 618.2 499 70.3
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 9.1e-175 617.5 507 70.4
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.0e-173 611.7 494 69.2
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.5e-173 611.3 529 67.9
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.9e-172 609.8 495 70.3
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.1e-171 606.3 539 66.4
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 4.7e-171 605.1 508 68.1
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 6.1e-171 604.7 497 69.6
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 2.3e-170 602.8 507 69.0
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 4.0e-170 602.1 494 69.2
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 4.0e-170 602.1 500 69.2
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 8.8e-170 600.9 494 69.8
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.4e-169 598.6 510 68.2
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.4e-169 598.6 510 68.2
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.3e-168 597.0 499 68.3
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.2e-168 596.3 499 68.3
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 8.3e-168 594.3 482 69.9
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 8.3e-168 594.3 499 68.1
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.1e-167 594.0 518 67.8
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.1e-167 594.0 500 68.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.4e-167 593.6 495 69.1
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.4e-167 593.6 499 68.1
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.4e-167 593.6 499 67.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.8e-167 593.2 519 65.9
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.8e-167 593.2 464 71.3
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.8e-167 593.2 501 67.3
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.4e-167 592.8 499 67.9
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.4e-167 592.8 510 67.8
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.1e-167 592.4 508 67.1
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 5.3e-167 591.7 499 67.7
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 5.3e-167 591.7 509 68.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 7.0e-167 591.3 508 67.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 9.1e-167 590.9 509 68.0
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.6e-166 590.1 500 67.8
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.0e-166 589.7 486 68.9
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 2.0e-166 589.7 495 68.5
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 3.5e-166 589.0 510 67.3
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.5e-166 588.6 499 67.7
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 7.7e-166 587.8 499 66.5
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 2.9e-165 585.9 500 67.2
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 3.8e-165 585.5 507 66.3
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.0e-165 585.1 506 66.2
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 6.5e-165 584.7 509 68.2
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 1.5e-164 583.6 499 67.5
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.5e-164 582.8 510 66.5
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.4e-164 580.9 510 66.1
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 2.7e-163 579.3 493 67.1
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 4.7e-163 578.6 487 67.6
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.4e-162 577.0 499 66.3
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.8e-162 576.6 500 66.0
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 6.8e-162 574.7 493 67.1
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 7.5e-161 571.2 499 66.5
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 4.8e-160 568.5 502 65.7
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.1e-159 565.8 516 64.5
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 1.6e-158 563.5 490 65.7
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.0e-158 563.1 509 64.6
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 3.5e-158 562.4 514 62.8
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.5e-158 562.4 488 66.8
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.5e-158 562.4 516 64.3
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 3.5e-158 562.4 498 65.7
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 3.5e-158 562.4 506 63.6
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.3e-157 559.7 511 63.6
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.1e-156 557.4 421 73.2
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.1e-156 557.4 512 63.5
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.9e-156 556.6 512 62.9
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 3.3e-156 555.8 512 62.9
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 4.2e-156 555.4 512 63.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 4.2e-156 555.4 489 64.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 5.5e-156 555.1 509 65.4
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.1e-155 553.1 512 62.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.7e-155 552.0 507 63.9
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.1e-155 551.6 479 65.8
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 6.1e-155 551.6 500 64.2
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 6.1e-155 551.6 512 62.9
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.0e-154 550.8 496 63.7
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 4.0e-154 548.9 512 62.7
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.5e-153 547.0 499 63.9
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 9.8e-153 544.3 482 64.5
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 1.7e-152 543.5 489 64.2
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 6.3e-152 541.6 507 64.1
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.8e-151 540.0 447 69.1
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 4.1e-151 538.9 510 62.2
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 4.1e-151 538.9 512 62.3
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 4.1e-151 538.9 496 62.3
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 7.0e-151 538.1 510 62.4
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.0e-150 536.6 499 62.7
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.8e-147 526.2 531 62.1
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 1.4e-146 523.9 489 62.0
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.0e-142 510.0 381 73.0
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.0e-141 507.7 448 66.5
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.5e-140 501.1 492 62.2
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 3.6e-139 499.2 535 58.5
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.7e-134 483.0 470 57.9
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 8.6e-133 478.0 484 59.9
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 8.6e-133 478.0 359 71.3
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.6e-123 447.2 481 57.6
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.3e-120 437.6 379 62.0
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.7e-120 437.2 461 61.2
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 7.3e-116 421.8 446 56.7
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.1e-115 420.2 510 52.9
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.1e-111 407.9 398 60.8
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.2e-110 404.4 394 61.9
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 9.9e-105 384.8 382 63.1
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 7.9e-94 348.6 492 50.2
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.0e-93 346.7 427 49.2
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 3.8e-88 329.7 324 56.5
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 7.1e-87 325.5 351 55.8
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.6e-86 324.3 375 56.8
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.6e-86 324.3 375 56.8
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 5.5e-79 299.3 421 47.0
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 2.7e-78 297.0 384 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 5.1e-77 292.7 417 43.4
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 4.1e-74 283.1 254 65.4
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.4e-73 280.0 220 71.4
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.2e-67 260.8 222 66.7
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 9.7e-60 235.3 361 43.5
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 4.1e-58 229.9 264 54.5
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.6e-54 218.0 207 62.8
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.2e-52 211.8 443 35.2
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 8.5e-48 195.7 408 35.8
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-42 178.3 165 63.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.4e-34 149.8 96 78.1
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 7.0e-34 149.4 106 65.1
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 5.6e-31 139.8 91 78.0
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 4.0e-29 133.7 234 44.4
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 8.9e-29 132.5 135 61.5
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 1.4e-26 125.2 87 73.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.1e-18 99.0 122 48.4
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 7.1e-18 96.3 185 38.4
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 3.0e-16 90.9 93 57.0
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.9e-16 90.5 157 47.8
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 3.2e-10 70.9 71 60.6
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 6.0e-09 66.6 63 58.7
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.3e-08 64.7 61 54.1
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.3e-08 64.7 61 54.1
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.6e-07 59.3 61 50.8
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 2.1e-06 58.2 96 33.3


User provided reference genes

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