Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 0.0e+00 1274.6 672 100.0
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 0.0e+00 1219.1 727 89.3
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.8e-267 925.2 729 63.9
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 3.7e-251 871.7 745 60.0
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.9e-247 859.4 722 59.6
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.2e-247 858.6 726 60.7
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.5e-244 849.7 729 60.1
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 3.8e-240 835.1 733 58.3
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.1e-239 833.6 726 59.5
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 2.1e-238 829.3 726 57.9
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.7e-237 823.9 722 58.0
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 3.3e-236 822.0 734 58.3
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.3e-235 820.1 718 57.8
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 3.7e-235 818.5 764 55.4
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 1.1e-234 817.0 729 56.1
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.4e-234 816.6 728 58.5
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 2.4e-234 815.8 727 56.9
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 3.1e-234 815.5 732 58.2
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.6e-233 812.4 738 55.8
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 3.4e-233 812.0 723 57.5
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 7.7e-233 810.8 723 57.3
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 1.0e-232 810.4 726 56.6
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.7e-232 809.7 723 57.3
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.7e-232 809.7 723 58.1
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 2.2e-232 809.3 769 55.0
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.1e-231 807.0 723 57.4
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 2.5e-231 805.8 726 57.7
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 7.2e-231 804.3 723 57.1
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 9.4e-231 803.9 738 55.3
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 9.4e-231 803.9 726 60.2
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.2e-230 803.5 719 57.0
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.6e-230 803.1 735 57.1
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 4.6e-230 801.6 739 55.8
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 6.1e-230 801.2 722 56.8
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 7.9e-230 800.8 730 58.5
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.4e-229 800.0 738 55.3
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 1.8e-229 799.7 723 56.7
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 1.8e-229 799.7 723 57.5
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 2.3e-229 799.3 726 55.8
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 3.0e-229 798.9 729 56.4
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 3.9e-229 798.5 733 55.3
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 6.7e-229 797.7 725 56.4
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 8.8e-229 797.3 699 58.5
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 2.0e-228 796.2 725 55.4
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.3e-228 795.0 726 55.5
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 1.7e-227 793.1 730 56.2
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 2.2e-227 792.7 739 55.8
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 3.7e-227 792.0 732 56.0
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 4.8e-227 791.6 724 55.9
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 6.3e-227 791.2 727 56.1
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 1.8e-226 789.6 726 55.9
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 1.8e-226 789.6 728 56.5
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 2.4e-226 789.3 723 56.0
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 2.4e-226 789.3 722 56.1
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 3.1e-226 788.9 722 55.8
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 4.1e-226 788.5 723 56.0
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 4.1e-226 788.5 732 56.0
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 5.3e-226 788.1 729 56.2
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 1.0e-224 783.9 731 55.7
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 9.4e-223 777.3 706 56.8
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 7.9e-222 774.2 721 56.6
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 1.4e-221 773.5 727 55.3
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 4.8e-219 765.0 734 54.5
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-218 763.8 729 54.3
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.2e-217 760.4 724 53.5
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.2e-216 756.1 623 59.9
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 3.8e-216 755.4 627 60.6
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 2.5e-215 752.7 792 51.1
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 7.2e-215 751.1 708 54.7
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 2.3e-213 746.1 709 54.3
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 3.8e-208 728.8 619 59.8
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 2.7e-206 722.6 609 58.0
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 4.8e-203 711.8 605 57.9
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 3.1e-202 709.1 721 55.9
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.5e-199 699.5 730 51.4
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 2.5e-199 699.5 668 53.0
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 9.5e-199 697.6 651 55.9
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.8e-197 693.3 693 50.2
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 4.9e-195 685.3 607 55.5
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 9.5e-191 671.0 723 50.5
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.0e-189 667.5 731 46.2
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.9e-183 646.7 584 58.0
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.9e-179 632.9 675 52.9
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 2.5e-175 619.8 598 53.5
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 4.3e-175 619.0 634 50.6
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.8e-173 613.6 764 46.9
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 6.8e-173 611.7 499 61.1
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 2.0e-172 610.1 737 46.7
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 7.8e-169 598.2 495 60.4
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.3e-168 597.4 454 64.5
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 4.7e-166 589.0 615 51.2
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.8e-165 587.0 819 43.8
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.5e-164 583.9 729 45.7
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.3e-159 565.8 617 50.6
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.2e-157 558.9 456 61.2
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 3.2e-154 549.7 730 45.1
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 9.9e-148 528.1 527 53.9
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 8.7e-136 488.4 610 43.6
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 5.6e-135 485.7 733 40.2
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 4.0e-133 479.6 740 38.2
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.4e-125 453.8 582 42.6
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 8.2e-118 428.7 405 54.8
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 2.4e-117 427.2 435 57.0
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 2.2e-110 404.1 360 56.9
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 4.2e-106 389.8 657 37.3
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 4.7e-105 386.3 346 58.7
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.6e-100 371.3 545 38.9
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 8.5e-99 365.5 628 39.0
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 3.4e-87 327.0 289 56.7
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.5e-87 325.9 482 39.2
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.6e-75 285.8 243 58.8
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.0e-72 277.3 469 36.9
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.3e-58 230.7 125 76.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 5.8e-55 219.9 227 52.0
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.4e-53 215.3 144 72.9
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.1e-50 205.7 632 27.5
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 2.5e-50 204.5 227 47.6
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.0e-44 183.3 191 54.5
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 3.0e-43 181.0 225 40.9
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 2.1e-41 174.9 322 36.6
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 8.4e-38 162.9 186 47.3
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.3e-33 149.1 114 56.1
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 6.2e-33 146.7 103 67.0
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.9e-29 135.2 105 60.0
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.2e-28 132.5 126 52.4
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.3e-27 128.3 126 52.4
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 4.3e-18 97.4 135 40.0
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 7.4e-18 96.7 81 55.6
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.5e-14 83.6 169 34.3
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 6.0e-12 77.0 61 54.1
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 5.7e-10 70.5 44 70.5
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 8.2e-09 66.6 44 68.2
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 1.8e-08 65.5 60 48.3
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 2.0e-07 62.0 43 60.5
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 4.5e-07 60.8 57 47.4
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.0e-06 59.7 39 64.1


User provided reference genes

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