Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 7.2e-124 447.2 218 100.0
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.0e-122 443.4 218 98.6
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 2.0e-110 402.5 219 88.6
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.8e-103 379.4 220 82.7
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 4.1e-103 378.3 220 83.6
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 3.5e-102 375.2 219 83.6
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.3e-101 372.5 219 83.6
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 3.0e-101 372.1 219 83.1
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 3.0e-101 372.1 220 82.3
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.5e-100 369.0 220 82.3
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.5e-100 369.0 219 81.7
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 7.3e-100 367.5 219 82.6
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 9.5e-100 367.1 220 82.3
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.2e-99 366.7 220 82.7
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 1.2e-99 366.7 220 81.8
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.6e-99 366.3 220 81.4
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.6e-99 366.3 221 82.4
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.1e-99 365.9 219 81.3
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.1e-99 365.9 219 80.4
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 2.1e-99 365.9 219 79.5
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 3.6e-99 365.2 220 80.9
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 4.7e-99 364.8 220 80.0
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 4.7e-99 364.8 221 79.6
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 4.7e-99 364.8 220 80.9
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.2e-99 364.4 221 79.6
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 6.2e-99 364.4 219 82.6
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 6.2e-99 364.4 219 80.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 8.0e-99 364.0 219 79.9
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.0e-99 364.0 221 79.2
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.0e-98 363.6 220 80.5
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 3.1e-98 362.1 220 80.9
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.1e-98 362.1 221 79.2
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 4.0e-98 361.7 219 79.5
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 6.8e-98 360.9 220 80.5
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 6.8e-98 360.9 219 80.4
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.2e-97 360.1 220 78.6
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.5e-97 359.8 219 78.5
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 1.5e-97 359.8 219 80.4
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.4e-97 358.6 222 78.8
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 4.4e-97 358.2 220 78.2
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 5.8e-97 357.8 219 79.0
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 7.5e-97 357.5 219 79.5
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 9.8e-97 357.1 219 78.5
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 3.7e-96 355.1 219 77.6
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 6.4e-96 354.4 219 77.6
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 8.3e-96 354.0 220 78.6
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 3.2e-95 352.1 220 77.7
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 2.0e-94 349.4 219 78.1
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 4.6e-94 348.2 219 76.7
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 4.6e-94 348.2 221 78.7
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 6.0e-94 347.8 238 75.2
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 7.8e-94 347.4 219 79.0
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.7e-93 346.3 220 75.9
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 3.0e-93 345.5 221 75.6
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 5.0e-93 344.7 221 75.6
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 5.0e-93 344.7 219 78.1
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.1e-92 343.6 221 75.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 5.6e-92 341.3 228 72.8
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 5.6e-92 341.3 193 85.0
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.2e-91 340.1 220 76.4
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.2e-91 340.1 220 75.9
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.2e-91 340.1 219 75.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 1.6e-91 339.7 220 75.0
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 3.6e-91 338.6 219 74.4
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 4.7e-91 338.2 219 74.4
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.1e-90 337.0 220 75.5
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.4e-90 336.7 220 75.9
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 1.8e-90 336.3 199 82.9
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 5.2e-90 334.7 219 75.8
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 6.8e-90 334.3 219 74.0
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.9e-90 334.0 196 82.7
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.0e-89 332.8 220 73.6
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 2.0e-89 332.8 219 74.9
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 2.0e-89 332.8 219 74.9
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.3e-88 330.1 220 74.5
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.3e-88 330.1 220 74.5
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 6.4e-88 327.8 219 73.1
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 8.3e-88 327.4 218 70.6
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.4e-87 326.6 197 81.2
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.4e-87 326.6 194 82.5
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.9e-87 326.2 194 81.4
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.4e-87 325.9 196 81.1
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 3.2e-87 325.5 221 73.8
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.6e-86 323.2 299 58.2
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 6.0e-86 321.2 194 79.4
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 6.0e-86 321.2 232 69.0
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.0e-85 320.5 221 72.4
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.0e-85 318.9 193 78.8
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 8.6e-85 317.4 222 71.2
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 8.6e-85 317.4 222 71.2
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 8.6e-85 317.4 212 74.1
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 1.1e-84 317.0 182 84.1
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.5e-84 315.8 220 71.8
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.5e-84 315.8 220 71.8
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 2.5e-84 315.8 221 71.0
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 3.3e-84 315.5 220 72.3
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 3.3e-84 315.5 194 79.4
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 4.3e-84 315.1 194 79.4
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 5.6e-84 314.7 198 78.8
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 9.5e-84 313.9 220 71.8
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 1.2e-83 313.5 222 70.3
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.1e-83 312.8 195 78.5
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.8e-83 312.4 210 72.4
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 1.8e-82 309.7 220 71.4
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 7.6e-81 304.3 194 77.8
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.7e-80 303.1 219 68.9
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.9e-80 302.4 288 56.9
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 2.9e-80 302.4 195 75.4
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.6e-78 295.0 204 72.1
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 6.0e-78 294.7 209 70.8
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.1e-76 290.4 221 68.8
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 2.1e-75 286.2 192 71.9
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.4e-74 283.5 219 62.1
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.1e-74 282.3 215 64.7
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.2e-73 280.4 214 65.0
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 3.4e-73 278.9 168 80.4
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.2e-72 276.2 171 77.8
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 2.2e-72 276.2 178 78.1
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.6e-70 270.0 213 62.4
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 4.6e-70 268.5 225 62.2
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 4.6e-70 268.5 225 62.2
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 3.9e-69 265.4 220 62.7
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 5.1e-69 265.0 215 62.3
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 3.6e-67 258.8 162 78.4
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 7.6e-65 251.1 222 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.2e-64 249.6 221 56.6
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 4.9e-64 248.4 194 63.4
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.4e-63 246.1 221 54.8
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.7e-62 242.7 192 62.5
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 7.9e-62 241.1 158 75.3
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 5.1e-61 238.4 195 64.6
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 5.1e-61 238.4 168 70.2
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 3.1e-50 202.6 218 48.6
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.5e-49 200.3 151 66.2
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 5.8e-49 198.4 162 62.3
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.9e-48 196.1 182 57.7
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.8e-42 176.8 93 86.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 8.5e-40 167.9 220 39.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 2.5e-39 166.4 242 38.8
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 6.3e-35 151.8 247 40.9
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.4e-34 150.6 217 39.2
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.2e-32 143.3 100 72.0
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.4e-31 140.6 84 81.0
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 8.8e-29 131.3 84 71.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.2e-27 126.7 139 46.8
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 6.7e-21 105.1 79 73.4
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 5.7e-20 102.1 93 55.9
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 1.2e-12 77.8 141 38.3
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.2e-09 67.8 204 24.0
unitig_899.g14971 Utricularia gibba HOM05D000351 ORTHO05D006179 1.6e-06 57.4 37 67.6


User provided reference genes

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