Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 9.6e-217 756.5 375 100.0
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 1.5e-201 706.1 375 92.8
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 1.8e-138 496.5 376 65.2
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 1.7e-133 479.9 375 63.2
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 2.3e-130 469.5 331 67.7
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 2.4e-127 459.5 338 65.1
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 1.0e-125 454.1 337 65.3
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 2.3e-125 453.0 383 61.6
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.6e-123 446.8 328 66.2
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 2.8e-123 446.0 316 67.7
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 1.1e-122 444.1 313 66.1
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.1e-122 444.1 313 66.5
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 1.1e-122 444.1 355 60.8
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 2.3e-122 443.0 331 64.7
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 4.0e-122 442.2 338 64.8
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 8.9e-122 441.0 336 65.8
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 1.2e-121 440.7 332 62.7
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 1.5e-121 440.3 342 65.2
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.4e-121 438.7 313 65.8
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 2.9e-120 436.0 339 59.9
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 3.7e-120 435.6 337 64.4
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 4.9e-120 435.3 333 62.8
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 4.9e-120 435.3 333 62.8
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 4.9e-120 435.3 328 65.9
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 8.3e-120 434.5 336 61.0
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 8.3e-120 434.5 339 59.6
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.4e-119 433.0 313 65.2
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 3.2e-119 432.6 331 60.7
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 5.4e-119 431.8 339 59.0
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 7.1e-119 431.4 341 62.2
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 7.1e-119 431.4 345 63.2
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 9.2e-119 431.0 335 62.7
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 1.2e-118 430.6 337 61.1
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 5.1e-117 425.2 334 61.7
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 5.1e-117 425.2 341 61.3
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 1.1e-116 424.1 376 58.2
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.9e-116 423.3 313 65.5
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.9e-116 423.3 338 60.7
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.5e-116 422.9 355 57.7
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 2.5e-116 422.9 340 58.5
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 5.6e-116 421.8 332 63.0
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 7.3e-116 421.4 334 61.4
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 1.2e-115 420.6 327 64.5
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 1.6e-115 420.2 318 62.6
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 1.6e-115 420.2 332 62.3
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 2.1e-115 419.9 325 61.5
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 2.1e-115 419.9 319 61.1
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 3.6e-115 419.1 335 62.1
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 4.7e-115 418.7 325 61.2
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 4.7e-115 418.7 329 59.6
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 6.2e-115 418.3 386 58.0
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 1.1e-114 417.5 322 63.0
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.4e-114 417.2 331 62.5
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 1.4e-114 417.2 321 61.7
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 3.1e-114 416.0 323 62.8
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 1.5e-113 413.7 339 61.4
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 3.4e-113 412.5 305 65.6
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 6.4e-112 408.3 335 59.7
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 1.4e-111 407.1 288 67.4
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 2.4e-111 406.4 334 59.9
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 3.2e-111 406.0 334 59.0
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 3.2e-111 406.0 322 58.7
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 1.6e-110 403.7 335 58.5
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 3.5e-110 402.5 319 59.6
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 3.5e-110 402.5 335 58.8
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 4.6e-110 402.1 345 58.8
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 6.0e-110 401.7 337 59.3
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 1.0e-109 401.0 337 58.2
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 1.3e-109 400.6 333 58.9
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 3.9e-109 399.1 337 57.9
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 1.9e-108 396.7 337 57.3
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 1.9e-108 396.7 335 57.9
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 7.3e-108 394.8 338 57.7
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 1.2e-107 394.0 322 59.3
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 1.6e-107 393.7 322 59.3
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 2.8e-107 392.9 328 58.5
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 1.8e-106 390.2 364 56.0
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 8.9e-106 387.9 333 57.4
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 2.6e-105 386.3 333 57.4
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 7.6e-105 384.8 330 57.3
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 7.6e-105 384.8 301 62.1
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 9.9e-105 384.4 340 55.9
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 2.9e-104 382.9 397 51.9
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 3.8e-104 382.5 290 64.5
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 6.4e-104 381.7 332 56.6
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 4.2e-103 379.0 316 60.4
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 1.6e-102 377.1 338 58.0
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 3.5e-102 375.9 281 63.3
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 4.6e-102 375.6 355 54.4
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 2.3e-101 373.2 248 71.4
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 8.7e-101 371.3 362 53.3
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 6.4e-96 355.1 322 56.5
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 6.4e-96 355.1 304 57.9
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.2e-94 350.9 282 58.9
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 5.6e-92 342.0 264 62.5
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-90 337.8 258 64.0
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.2e-89 334.3 341 52.2
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.2e-86 324.3 313 51.8
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 5.5e-79 298.9 331 45.0
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 3.3e-76 289.7 241 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 9.6e-76 288.1 317 48.3
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 9.0e-74 281.6 324 48.5
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.0e-72 278.1 333 47.7
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 1.0e-72 278.1 267 51.3
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 6.5e-72 275.4 246 54.5
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 1.1e-71 274.6 448 36.2
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 1.9e-68 263.8 218 59.6
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 6.3e-67 258.8 308 49.4
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 4.5e-65 252.7 214 56.1
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 1.1e-63 248.1 206 60.7
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.1e-60 238.0 235 49.8
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 1.7e-59 234.2 330 40.9
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 4.5e-57 226.1 200 58.0
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 2.6e-49 200.3 156 60.9
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 2.2e-48 197.2 421 32.3
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 3.0e-45 186.8 151 62.3
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 1.5e-44 184.5 123 69.1
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 4.8e-43 179.5 127 66.1
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 4.1e-42 176.4 343 35.9
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 7.7e-41 172.2 124 62.9
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 4.7e-38 162.9 170 51.2
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 8.8e-37 158.7 122 58.2
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 4.8e-35 152.9 109 68.8
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 2.4e-34 150.6 352 31.5
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 5.2e-29 132.9 104 62.5
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 9.1e-26 122.1 93 61.3
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 1.6e-25 121.3 126 56.3
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 1.7e-19 101.3 65 72.3
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 2.9e-19 100.5 61 78.7
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 3.9e-16 90.1 109 50.5
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 4.6e-09 66.6 55 60.0
CAN.G548.23 Capsicum annuum HOM05D006002 ORTHO05D007651 7.8e-09 65.9 118 33.1
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 1.1e-07 62.0 181 29.8


User provided reference genes

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