Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.3e-111 406.4 208 100.0
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 6.7e-111 404.1 208 99.0
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.2e-64 250.4 217 65.0
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.8e-64 249.2 206 65.0
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.3e-63 246.1 198 67.2
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.0e-63 245.7 199 66.8
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 6.8e-63 244.6 209 62.7
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 6.8e-63 244.6 209 63.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 6.8e-63 244.6 203 66.0
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.0e-62 243.0 216 62.0
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 2.0e-62 243.0 201 63.2
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.0e-62 243.0 216 63.0
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 3.4e-62 242.3 202 66.3
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 4.4e-62 241.9 205 63.9
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 5.7e-62 241.5 212 63.2
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 7.5e-62 241.1 212 63.2
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 9.8e-62 240.7 202 63.9
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.3e-61 240.4 208 61.5
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.7e-61 240.0 217 59.9
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 2.8e-61 239.2 217 61.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 4.9e-61 238.4 202 63.9
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 4.9e-61 238.4 202 64.4
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.4e-60 236.9 219 59.8
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 3.1e-60 235.7 213 61.5
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 3.1e-60 235.7 211 63.5
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 5.4e-60 235.0 216 60.6
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 5.4e-60 235.0 219 59.8
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 7.0e-60 234.6 219 59.8
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 7.0e-60 234.6 219 59.8
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 7.0e-60 234.6 211 62.6
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 9.2e-60 234.2 219 59.8
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.2e-59 233.8 202 64.4
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 2.0e-59 233.0 211 61.6
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 2.0e-59 233.0 199 62.3
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.7e-59 232.6 219 59.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 3.5e-59 232.3 210 58.1
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 3.5e-59 232.3 210 60.0
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.5e-59 232.3 219 58.9
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 5.9e-59 231.5 200 62.0
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 5.9e-59 231.5 199 63.8
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.0e-58 230.7 199 62.3
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.0e-58 230.7 218 60.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.3e-58 230.3 209 60.8
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.7e-58 229.9 214 60.7
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 2.9e-58 229.2 201 62.2
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 3.8e-58 228.8 219 58.0
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.8e-58 228.8 199 62.8
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.1e-57 227.3 199 61.8
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.5e-57 226.9 223 58.3
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 1.5e-57 226.9 214 58.9
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.9e-57 226.5 205 61.5
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 2.5e-57 226.1 199 61.3
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 3.3e-57 225.7 209 57.4
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 3.3e-57 225.7 201 59.2
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 5.6e-57 224.9 197 62.4
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 5.6e-57 224.9 197 62.4
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 7.3e-57 224.6 209 59.3
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 7.3e-57 224.6 199 59.8
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 9.5e-57 224.2 215 57.2
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.2e-56 223.8 200 61.5
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-56 223.4 215 60.0
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-56 223.4 204 62.3
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.6e-56 223.4 204 62.3
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 2.1e-56 223.0 215 60.0
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.8e-56 222.6 203 59.1
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 2.8e-56 222.6 214 57.9
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 2.8e-56 222.6 200 62.0
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 3.6e-56 222.2 220 57.3
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 3.6e-56 222.2 220 57.3
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 4.7e-56 221.9 198 61.1
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.0e-55 220.7 197 60.9
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.4e-55 220.3 211 57.3
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.4e-55 220.3 189 63.0
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-55 219.9 222 58.6
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 3.1e-55 219.2 216 57.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 5.2e-55 218.4 199 58.3
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 6.8e-55 218.0 216 56.9
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.2e-54 217.2 201 57.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.5e-54 216.9 189 63.0
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.0e-54 216.5 201 58.2
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 2.0e-54 216.5 220 59.1
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 4.4e-54 215.3 213 57.3
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.8e-54 214.9 220 57.7
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.3e-53 213.8 216 58.3
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.9e-53 211.8 219 55.7
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 6.4e-53 211.5 207 57.5
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 6.4e-53 211.5 219 55.7
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.9e-52 209.9 218 54.1
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 3.2e-52 209.1 219 55.3
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.2e-52 209.1 219 55.3
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.2e-52 209.1 219 55.3
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 5.4e-52 208.4 203 55.7
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 7.0e-52 208.0 218 54.1
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.6e-51 206.8 192 60.4
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 2.0e-51 206.5 212 53.8
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 2.7e-51 206.1 219 57.5
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.7e-51 206.1 204 58.8
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 6.0e-51 204.9 209 58.4
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 7.8e-51 204.5 204 58.3
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.7e-50 203.4 205 55.6
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 2.3e-50 203.0 220 56.4
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.3e-50 203.0 206 53.9
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.0e-50 202.6 204 58.3
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 3.9e-50 202.2 179 61.5
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.9e-50 202.2 207 53.6
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.1e-49 200.7 218 52.3
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.5e-49 200.3 195 56.9
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.9e-49 199.9 162 65.4
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 5.6e-49 198.4 210 54.8
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 5.6e-49 198.4 215 49.8
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.2e-48 197.2 198 57.1
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 2.1e-48 196.4 162 63.6
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 6.2e-48 194.9 216 51.9
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.2e-48 194.9 225 53.8
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.1e-47 192.6 172 63.4
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.0e-47 192.2 218 52.3
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 4.0e-47 192.2 172 61.6
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 6.8e-47 191.4 172 60.5
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 6.8e-47 191.4 172 60.5
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.9e-47 191.0 225 52.9
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 8.9e-47 191.0 225 52.9
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.5e-46 190.3 199 55.8
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.6e-46 189.5 189 55.0
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 4.4e-46 188.7 202 54.0
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.3e-45 187.2 196 53.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.2e-45 186.4 144 66.7
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 4.9e-45 185.3 209 52.2
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 6.4e-45 184.9 199 53.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 5.1e-42 175.3 175 57.1
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-40 170.6 194 54.6
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.1e-40 169.9 195 52.3
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.8e-40 169.5 198 52.5
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 6.2e-40 168.3 200 50.0
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 3.4e-38 162.5 138 63.8
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 1.3e-37 160.6 168 55.4
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 8.3e-37 157.9 161 52.8
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.2e-36 156.0 198 50.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 8.6e-34 147.9 216 43.5
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 7.3e-33 144.8 114 68.4
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 7.3e-33 144.8 215 44.2
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 9.5e-33 144.4 100 74.0
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 3.1e-31 139.4 199 43.2
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 6.8e-31 138.3 195 44.1
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 1.5e-30 137.1 206 44.2
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.2e-28 129.4 96 70.8
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.2e-28 129.4 213 40.4
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.2e-28 129.0 190 45.8
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 4.7e-24 115.5 201 40.3
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.4e-23 114.0 93 59.1
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 3.9e-18 95.9 116 48.3
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 8.4e-13 78.2 96 44.8
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.1e-10 68.9 85 60.0
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 5.1e-10 68.9 96 42.7
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 1.6e-08 63.9 89 40.4
MCO11G868 Micromonas commoda HOM05D004453 ORTHO05D005375 8.1e-08 61.6 145 30.3
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.4e-07 60.8 63 55.6
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.5e-06 57.4 49 55.1
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 5.8e-06 55.5 49 53.1


User provided reference genes

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