Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 3315.0 1719 100.0
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 3247.6 1721 98.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2536.1 1729 76.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2470.7 1711 74.9
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2385.1 1732 72.1
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2375.1 1722 71.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2330.8 1724 70.0
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2330.8 1727 69.7
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2325.4 1724 70.0
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2317.0 1724 69.7
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2313.5 1724 69.4
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2309.6 1716 69.1
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2302.3 1718 69.4
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2301.9 1728 68.6
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2298.9 1728 69.5
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2296.9 1716 68.9
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2288.1 1709 68.8
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2282.7 1726 68.9
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2276.9 1727 68.8
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2275.0 1683 69.5
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2272.7 1721 68.3
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2241.8 1724 67.3
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2238.0 1738 67.1
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2234.1 1725 67.4
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2233.0 1679 68.4
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2231.4 1723 67.2
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2228.4 1726 66.7
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2228.4 1607 71.3
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2227.6 1723 67.3
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2227.2 1687 68.5
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2221.4 1742 67.8
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2221.4 1678 68.4
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2218.7 1724 66.9
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2209.1 1740 67.3
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2202.9 1724 66.6
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2202.9 1718 65.4
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2198.7 1724 66.4
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2188.7 1730 66.4
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2188.3 1719 65.0
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2184.8 1719 65.9
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2181.8 1730 66.2
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2176.7 1729 65.0
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2176.4 1717 64.9
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2171.0 1729 66.1
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2169.4 1740 65.6
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2166.7 1696 66.0
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2146.3 1747 65.0
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2145.2 1701 65.7
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2142.1 1698 65.9
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2140.2 1740 64.2
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2132.5 1713 64.0
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2121.7 1703 65.6
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2117.0 1693 65.3
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2112.0 1776 62.8
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2110.1 1781 63.4
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2109.0 1722 64.2
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2107.0 1726 64.1
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2103.6 1736 63.9
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2098.2 1723 63.1
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2097.4 1728 64.0
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2090.5 1763 64.3
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2082.8 1725 63.6
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2076.2 1723 63.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2073.9 1784 62.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2072.4 1740 62.6
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2061.2 1716 63.5
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2060.0 1733 62.4
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2057.7 1723 62.5
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2057.7 1874 60.3
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2048.9 1734 62.0
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2046.6 1741 61.6
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2046.2 1742 62.7
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2042.3 1414 71.4
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2027.3 1761 62.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2026.1 1735 61.3
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2022.7 1691 62.6
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2015.0 1704 61.7
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2014.6 1701 62.1
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1983.4 2149 53.6
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1979.5 1735 61.2
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1974.9 1620 63.7
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1939.1 1703 60.0
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1937.9 1657 61.4
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1932.5 1721 58.1
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1899.0 1296 69.8
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1896.7 1292 70.4
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1877.4 1714 58.1
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1877.1 1647 60.9
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1827.0 1810 56.7
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1805.0 1160 74.7
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1798.1 1461 63.4
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1724.5 1643 56.2
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1711.0 1697 53.6
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1701.8 1688 54.9
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1698.7 1697 55.0
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1665.2 1455 61.9
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1649.0 1640 54.3
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1595.9 1732 54.4
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1533.9 1045 71.0
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1500.0 1085 66.8
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1420.6 933 73.2
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1412.1 1373 57.5
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1369.4 1125 66.2
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1308.1 1108 64.0
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1261.5 1181 58.6
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1250.7 946 73.6
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1114.4 910 62.5
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.7e-276 957.2 743 64.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.1e-271 940.3 617 73.7
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.6e-263 914.1 799 65.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 7.1e-259 898.7 683 62.1
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 2.1e-242 844.0 601 68.9
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.3e-231 808.1 552 71.7
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.1e-211 741.9 1586 33.5
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 4.4e-208 729.9 853 42.2
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.4e-174 618.6 427 70.3
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 5.6e-155 553.5 376 71.8
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 8.2e-146 523.1 329 76.9
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 6.7e-140 503.4 575 57.4
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.6e-133 482.3 630 52.5
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 5.3e-121 440.7 887 32.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 1.8e-116 425.6 699 38.2
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 2.9e-111 408.3 552 53.3
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 3.8e-103 381.3 241 76.3
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 1.8e-100 372.5 454 41.9
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 6.3e-98 364.0 335 58.5
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.9e-95 355.1 216 73.1
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 8.9e-92 343.6 247 64.0
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.3e-78 298.5 193 75.1
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 5.6e-70 271.2 393 51.4
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 3.7e-66 258.5 181 63.5
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 5.6e-62 244.6 153 73.9
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 3.1e-60 238.8 175 64.0
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 5.6e-46 191.4 115 81.7
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 5.8e-43 181.4 203 42.9
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 4.6e-40 171.8 98 88.8
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 6.0e-40 171.4 443 38.6
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 9.6e-38 164.1 129 58.1
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 3.9e-31 142.1 169 46.7
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 8.7e-31 141.0 131 50.4
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 5.7e-30 138.3 206 42.7
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 8.2e-29 134.4 123 53.7
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 4.1e-28 132.1 240 44.6
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 2.5e-25 122.9 89 67.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 3.6e-24 119.0 88 65.9
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 6.1e-24 118.2 72 79.2
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.1e-23 115.2 57 91.2
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 6.7e-23 114.8 63 88.9
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 4.3e-22 112.1 93 62.4
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 2.8e-21 109.4 111 48.6
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 6.3e-21 108.2 280 40.4
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 1.4e-20 107.1 289 39.1
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 9.0e-20 104.4 75 73.3
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 6.5e-18 98.2 57 84.2
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 4.2e-17 95.5 214 34.1
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 5.5e-17 95.1 98 45.9
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 3.0e-15 89.4 84 52.4
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 3.3e-14 85.9 94 52.1
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 7.4e-14 84.7 53 69.8
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.2e-13 83.2 50 84.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.8e-12 80.1 52 76.9
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 2.2e-10 73.2 128 44.5
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.2e-10 73.2 58 55.2
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 8.5e-10 71.2 43 69.8
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.4e-09 70.5 95 40.0
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.6e-08 67.0 40 75.0
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 2.7e-08 66.2 54 57.4
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 3.6e-08 65.9 165 30.3
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 3.6e-08 65.9 68 50.0
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.4e-07 63.9 35 80.0
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.8e-07 63.5 106 42.5
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 1.8e-07 63.5 42 64.3
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.6e-06 59.7 49 67.3


User provided reference genes

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