Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 1.3e-149 533.1 290 100.0
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 9.6e-108 394.0 248 80.6
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 1.2e-94 350.5 246 71.5
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.7e-94 349.4 245 71.4
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.0e-93 347.4 248 73.8
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 1.8e-93 346.7 246 69.1
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 2.0e-92 343.2 246 68.7
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 2.6e-92 342.8 258 69.8
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.3e-91 340.5 239 70.7
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 1.7e-91 340.1 245 70.6
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 4.8e-91 338.6 246 68.3
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 6.3e-91 338.2 240 71.7
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 6.3e-91 338.2 246 69.9
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 6.3e-91 338.2 245 69.0
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 8.2e-91 337.8 238 71.8
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 8.2e-91 337.8 238 71.8
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 1.4e-90 337.0 248 67.7
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 1.4e-90 337.0 258 67.1
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 1.8e-90 336.7 247 68.8
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 2.4e-90 336.3 243 70.0
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 4.1e-90 335.5 248 67.3
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 5.3e-90 335.1 246 68.7
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 6.9e-90 334.7 247 68.0
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 6.9e-90 334.7 246 67.9
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 9.1e-90 334.3 245 68.6
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 2.6e-89 332.8 253 67.2
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.6e-89 332.8 246 67.9
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 5.9e-89 331.6 250 67.6
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 1.0e-88 330.9 243 68.3
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 1.0e-88 330.9 246 67.9
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 1.0e-88 330.9 247 67.2
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 1.3e-88 330.5 250 67.2
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 1.3e-88 330.5 250 67.2
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 1.3e-88 330.5 243 68.7
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 1.7e-88 330.1 241 68.0
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 2.2e-88 329.7 244 67.6
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 2.2e-88 329.7 244 66.4
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 2.2e-88 329.7 256 64.8
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 2.9e-88 329.3 247 67.6
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 2.9e-88 329.3 246 68.3
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 3.8e-88 328.9 247 66.8
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 3.8e-88 328.9 246 65.4
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 5.0e-88 328.6 246 65.4
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 5.0e-88 328.6 246 67.5
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 5.0e-88 328.6 243 68.7
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 5.0e-88 328.6 246 65.4
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 6.5e-88 328.2 245 67.3
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 6.5e-88 328.2 246 67.9
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 8.5e-88 327.8 245 67.8
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 1.1e-87 327.4 244 66.8
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 1.9e-87 326.6 280 61.4
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 1.9e-87 326.6 242 67.4
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.9e-87 326.6 254 66.1
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 2.5e-87 326.2 243 67.1
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 2.5e-87 326.2 243 67.1
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 2.5e-87 326.2 246 65.0
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 2.5e-87 326.2 245 66.5
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 3.2e-87 325.9 245 66.9
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 3.2e-87 325.9 244 66.8
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 4.2e-87 325.5 181 84.5
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 4.2e-87 325.5 245 64.9
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 4.2e-87 325.5 181 84.0
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 5.5e-87 325.1 244 66.4
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 9.4e-87 324.3 245 65.3
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 1.6e-86 323.6 243 66.7
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 1.6e-86 323.6 243 68.3
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 2.1e-86 323.2 246 65.9
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 2.7e-86 322.8 243 66.3
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 2.7e-86 322.8 258 65.1
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 3.6e-86 322.4 246 65.0
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 6.1e-86 321.6 247 65.6
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 1.4e-85 320.5 244 65.6
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 1.4e-85 320.5 181 81.8
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.8e-85 320.1 181 81.8
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 1.8e-85 320.1 181 82.9
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 3.9e-85 318.9 247 64.4
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 3.9e-85 318.9 246 67.9
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 6.7e-85 318.2 271 60.5
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 6.7e-85 318.2 181 80.7
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 1.5e-84 317.0 181 82.9
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 1.5e-84 317.0 245 64.9
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 2.0e-84 316.6 181 80.7
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 5.7e-84 315.1 247 64.8
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 5.7e-84 315.1 238 66.0
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 5.7e-84 315.1 244 64.8
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 1.3e-83 313.9 242 65.7
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 2.8e-83 312.8 242 65.3
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 2.4e-82 309.7 246 63.8
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 2.4e-82 309.7 229 67.7
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 1.3e-80 303.9 229 67.7
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 8.5e-80 301.2 243 63.4
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.6e-78 297.0 181 76.2
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 2.7e-78 296.2 255 62.0
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 3.6e-78 295.8 181 76.8
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 2.0e-76 290.0 183 73.2
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.0e-76 290.0 181 72.9
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.0e-76 290.0 181 73.5
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 3.3e-76 289.3 247 61.5
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 3.3e-76 289.3 217 65.4
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.3e-75 287.3 227 63.4
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.7e-75 287.0 288 53.5
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 1.7e-75 287.0 181 74.0
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 7.0e-74 281.6 224 62.9
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 9.1e-74 281.2 299 53.8
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 9.1e-74 281.2 266 56.0
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 9.1e-74 281.2 246 59.3
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 2.6e-68 263.1 256 58.2
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 6.5e-64 248.4 246 54.9
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 2.5e-63 246.5 227 58.6
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 1.8e-61 240.4 209 62.2
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.4e-60 236.1 197 60.4
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 1.6e-57 227.3 181 61.3
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.3e-53 213.4 224 52.7
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 2.0e-52 210.3 182 56.0
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 2.6e-52 209.9 185 56.8
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 1.7e-51 207.2 181 59.1
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.9e-51 206.5 185 54.6
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 8.3e-51 204.9 182 54.4
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 4.1e-50 202.6 173 61.3
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 1.2e-49 201.1 178 59.6
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.7e-49 199.9 171 60.8
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 7.8e-49 198.4 179 54.2
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.3e-48 196.8 183 52.5
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 2.3e-45 186.8 174 54.0
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 5.6e-39 165.6 102 75.5
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 6.4e-35 152.1 244 40.2
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 3.5e-33 146.4 143 51.0
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 1.6e-25 120.9 87 69.0
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 3.9e-24 116.3 94 60.6
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 7.3e-23 112.1 63 76.2
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 6.2e-22 109.0 214 37.4
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 9.9e-20 101.7 59 78.0
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 3.0e-16 90.1 66 65.2
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.1e-15 88.2 247 33.2
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 4.0e-13 79.7 65 58.5
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 5.3e-13 79.3 37 89.2
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 4.5e-12 76.3 81 46.9
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 7.6e-12 75.5 66 57.6
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 2.1e-09 67.4 52 65.4
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 6.0e-09 65.9 70 57.1
PSO447G0350 Papaver somniferum HOM05D001659 ORTHO05D001659 7.9e-09 65.5 180 28.3
RcHm_v2.0_Chr4g0397091 Rosa chinensis HOM05D001659 ORTHO05D001659 1.0e-08 65.1 180 28.9
Hund06382 Selenicereus undatus HOM05D001659 ORTHO05D001659 1.8e-08 64.3 196 28.1
Manes.06G012700 Manihot esculenta HOM05D001659 ORTHO05D001659 2.3e-08 63.9 180 27.8
Gohir.D02G197300 Gossypium hirsutum HOM05D001659 ORTHO05D001659 3.0e-08 63.5 180 28.3
DCAR_021859 Daucus carota HOM05D001659 ORTHO05D001659 3.9e-08 63.2 180 28.3
ECA234G3786 Erigeron canadensis HOM05D001659 ORTHO05D001659 5.1e-08 62.8 180 28.3
SalBow6G2656 Salvia bowleyana HOM05D001659 ORTHO05D001659 5.1e-08 62.8 180 27.8
Lj4g0002004 Lotus japonicus HOM05D001659 ORTHO05D001659 6.7e-08 62.4 180 27.8
MD16G1236400 Malus domestica HOM05D001659 ORTHO05D001659 6.7e-08 62.4 180 28.3
AT5G64210 Arabidopsis thaliana HOM05D001659 ORTHO05D001659 8.7e-08 62.0 180 28.9
Carub.0008s2500 Capsella rubella HOM05D001659 ORTHO05D001659 8.7e-08 62.0 180 28.9
COL.COLO4_06967 Corchorus olitorius HOM05D001659 ORTHO05D001659 1.5e-07 61.2 180 27.8
Gohir.D02G197200 Gossypium hirsutum HOM05D001659 ORTHO05D001659 1.5e-07 61.2 180 27.2
Gorai.005G220400 Gossypium raimondii HOM05D001659 ORTHO05D001659 1.5e-07 61.2 180 27.2
VMungo0251G1505 Vigna mungo HOM05D001659 ORTHO05D001659 1.5e-07 61.2 180 27.8
ATR0829G151 Amborella trichopoda HOM05D001659 ORTHO05D001659 1.9e-07 60.8 182 28.6
COL.COLO4_24938 Corchorus olitorius HOM05D001659 ORTHO05D001659 1.9e-07 60.8 180 27.8
Duzib132G1029 Durio zibethinus HOM05D001659 ORTHO05D001659 1.9e-07 60.8 180 27.8
Gohir.A03G174100 Gossypium hirsutum HOM05D001659 ORTHO05D001659 1.9e-07 60.8 180 27.8
Gorai.005G220500 Gossypium raimondii HOM05D001659 ORTHO05D001659 1.9e-07 60.8 180 27.8
HanXRQChr16g0514271 Helianthus annuus HOM05D001659 ORTHO05D001659 1.9e-07 60.8 180 27.8
Aqoxy5G01905 Aquilegia oxysepala HOM05D001659 ORTHO05D001659 2.5e-07 60.5 180 27.8
CSS0030122 Camellia sinensis var. sinensis HOM05D001659 ORTHO05D001659 2.5e-07 60.5 180 27.8
Medtr4g094222 Medicago truncatula HOM05D001659 ORTHO05D001659 2.5e-07 60.5 180 27.8
Cc02_g21530 Coffea canephora HOM05D001659 ORTHO05D001659 5.6e-07 59.3 180 27.8
Thhalv10005697m.g Eutrema salsugineum HOM05D001659 ORTHO05D001659 5.6e-07 59.3 180 27.8
Sp2g27270 Schrenkiella parvula HOM05D001659 ORTHO05D001659 5.6e-07 59.3 170 28.2
vmacro19931 Vaccinium macrocarpon HOM05D001659 ORTHO05D001659 5.6e-07 59.3 180 27.8
VMungo1127G1471 Vigna mungo HOM05D001659 ORTHO05D001659 5.6e-07 59.3 167 28.1
CAN.G1731.3 Capsicum annuum HOM05D001659 ORTHO05D001659 1.3e-06 58.2 182 28.0
Gohir.A03G174000 Gossypium hirsutum HOM05D001659 ORTHO05D001659 1.3e-06 58.2 180 26.7
Nitab4.5_0000985g0020 Nicotiana tabacum HOM05D001659 ORTHO05D001659 1.3e-06 58.2 182 28.0
Nitab4.5_0000030g0350 Nicotiana tabacum HOM05D001659 ORTHO05D001659 1.6e-06 57.8 182 28.0
AL8G41480 Arabidopsis lyrata HOM05D001659 ORTHO05D001659 2.1e-06 57.4 167 28.7
FAN07G0088 Fragaria x ananassa HOM05D001659 ORTHO05D001659 2.1e-06 57.4 180 27.8
vmacro00077 Vaccinium macrocarpon HOM05D001659 ORTHO05D001659 2.1e-06 57.4 182 28.0
Nn3g19263 Nelumbo nucifera HOM05D001659 ORTHO05D001659 2.8e-06 57.0 182 27.5
CDE12G0388 Ceratophyllum demersum HOM05D001659 ORTHO05D001659 4.8e-06 56.2 182 26.9
THA.LOC104819331 Tarenaya hassleriana HOM05D001659 ORTHO05D001659 4.8e-06 56.2 180 26.7
Nitab4.5_0013698g0010 Nicotiana tabacum HOM05D001659 ORTHO05D001659 6.2e-06 55.8 182 27.5
Dinv41813 Davidia involucrata HOM05D001659 ORTHO05D001659 8.1e-06 55.5 182 27.5


User provided reference genes

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