Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.7e-45 185.7 94 100.0
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.7e-45 185.7 94 100.0
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.1e-41 172.9 94 94.7
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 5.6e-41 170.6 94 93.6
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.2e-38 162.9 91 87.9
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 2.0e-38 162.2 91 85.7
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 3.4e-38 161.4 91 85.7
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.4e-38 161.4 91 86.8
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.7e-37 159.1 91 85.7
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 2.2e-37 158.7 91 84.6
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.9e-37 158.3 91 84.6
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 3.8e-37 157.9 91 84.6
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 8.4e-37 156.8 91 83.5
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.1e-36 156.4 91 82.4
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.4e-36 156.0 91 83.5
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.4e-36 156.0 91 83.5
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.4e-36 156.0 91 83.5
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 84.9
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.9e-36 155.6 91 83.5
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 2.4e-36 155.2 91 82.4
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 2.4e-36 155.2 88 85.2
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 2.4e-36 155.2 91 81.3
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.4e-36 155.2 91 81.3
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 4.2e-36 154.5 91 82.4
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 4.2e-36 154.5 91 81.3
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.4e-36 154.1 84 88.1
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 5.4e-36 154.1 91 82.4
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 5.4e-36 154.1 88 86.4
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 7.1e-36 153.7 91 81.3
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 7.1e-36 153.7 91 82.4
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 7.1e-36 153.7 93 82.8
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 7.1e-36 153.7 91 80.2
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 9.3e-36 153.3 91 82.4
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 9.3e-36 153.3 91 81.3
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.6e-35 152.5 91 82.4
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.6e-35 152.5 91 80.2
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.6e-35 152.5 91 80.2
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.1e-35 152.1 92 80.4
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 2.1e-35 152.1 88 84.1
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 2.1e-35 152.1 91 80.2
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.1e-35 152.1 91 81.3
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.1e-35 152.1 87 82.8
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 2.7e-35 151.8 88 81.8
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 2.7e-35 151.8 88 81.8
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.7e-35 151.8 84 85.7
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 2.7e-35 151.8 91 78.0
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 3.5e-35 151.4 91 81.3
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 6.0e-35 150.6 88 81.8
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 6.0e-35 150.6 88 81.8
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 6.0e-35 150.6 91 79.1
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 6.0e-35 150.6 92 79.3
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 7.9e-35 150.2 88 80.7
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 7.9e-35 150.2 92 80.4
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 7.9e-35 150.2 92 79.3
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 1.0e-34 149.8 91 81.3
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 1.0e-34 149.8 90 78.9
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.3e-34 149.4 91 79.1
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.3e-34 149.4 88 80.7
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.3e-34 149.4 94 79.8
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.3e-34 149.4 91 79.1
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.8e-34 149.1 88 80.7
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.8e-34 149.1 88 80.7
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.3e-34 148.7 91 78.0
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 3.0e-34 148.3 86 81.4
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 3.0e-34 148.3 91 76.9
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 3.0e-34 148.3 91 79.1
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 3.9e-34 147.9 90 77.8
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 5.1e-34 147.5 88 79.5
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 5.1e-34 147.5 88 79.5
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 5.1e-34 147.5 91 78.0
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 6.7e-34 147.1 93 74.2
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 6.7e-34 147.1 88 79.5
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.7e-34 147.1 88 79.5
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 6.7e-34 147.1 91 79.1
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 6.7e-34 147.1 90 80.0
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 1.1e-33 146.4 93 76.3
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 1.1e-33 146.4 93 76.3
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.5e-33 146.0 88 79.5
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.5e-33 146.0 88 78.4
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 1.5e-33 146.0 90 76.7
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 1.5e-33 146.0 88 80.7
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.5e-33 146.0 90 77.8
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.3e-33 144.8 88 77.3
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 5.6e-33 144.1 88 76.1
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 5.6e-33 144.1 88 79.5
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 7.4e-33 143.7 87 79.3
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 9.6e-33 143.3 91 74.7
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 9.6e-33 143.3 91 74.7
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.3e-32 142.9 91 72.5
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.3e-32 142.9 94 72.3
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.3e-32 142.9 91 75.8
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 1.6e-32 142.5 89 76.4
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.1e-32 142.1 91 73.6
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 73.4
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 2.1e-32 142.1 92 70.7
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 2.1e-32 142.1 92 70.7
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 2.1e-32 142.1 91 78.0
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 75.5
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 2.8e-32 141.7 74 90.5
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.7e-32 141.4 91 76.9
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 6.2e-32 140.6 89 76.4
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 8.1e-32 140.2 91 76.9
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.1e-32 140.2 88 75.0
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.1e-32 140.2 88 75.0
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.1e-31 139.8 94 73.4
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.4e-31 139.4 94 72.3
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.4e-31 139.4 80 80.0
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 1.8e-31 139.0 91 75.8
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.8e-31 139.0 88 75.0
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 4.0e-31 137.9 89 75.3
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 4.0e-31 137.9 89 75.3
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 5.3e-31 137.5 89 75.3
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 5.3e-31 137.5 89 75.3
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 9.0e-31 136.7 94 71.3
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 9.0e-31 136.7 94 71.3
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 9.0e-31 136.7 94 71.3
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 9.0e-31 136.7 94 71.3
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 9.0e-31 136.7 94 71.3
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 9.0e-31 136.7 94 71.3
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 9.0e-31 136.7 88 72.7
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.2e-30 136.3 118 61.0
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 1.2e-30 136.3 94 70.2
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 2.0e-30 135.6 92 70.7
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 3.4e-30 134.8 86 73.3
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 3.4e-30 134.8 79 79.7
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.3e-29 132.9 91 73.6
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 2.2e-29 132.1 89 73.0
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 2.9e-29 131.7 91 70.3
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 3.8e-29 131.3 70 88.6
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.9e-29 131.0 71 88.7
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.9e-28 129.0 91 72.5
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-28 129.0 89 70.8
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.1e-27 125.6 71 83.1
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.1e-27 125.6 86 73.3
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 2.1e-27 125.6 80 73.8
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 3.5e-27 124.8 70 82.9
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 7.9e-27 123.6 70 81.4
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 7.9e-27 123.6 71 83.1
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 1.0e-26 123.2 70 81.4
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.8e-26 122.5 71 80.3
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.1e-25 119.8 71 81.7
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.5e-25 119.4 71 80.3
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 9.6e-25 116.7 114 53.5
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 4.0e-23 111.3 71 77.5
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 6.9e-23 110.5 91 61.5
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 9.0e-23 110.2 70 78.6
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 1.3e-21 106.3 67 70.1
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 1.7e-21 105.9 61 78.7
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 4.6e-19 97.8 90 62.2
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 7.9e-19 97.1 96 55.2
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 2.3e-18 95.5 76 59.2
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 6.7e-18 94.0 80 57.5
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.9e-17 92.4 96 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 3.1e-15 85.1 90 48.9
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.0e-15 83.6 51 72.5
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.0e-15 83.6 51 72.5
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.0e-15 83.6 51 72.5
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.0e-15 83.6 51 72.5
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.2e-14 83.2 58 67.2
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.7e-13 79.3 48 77.1
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 3.8e-13 78.2 49 75.5
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.5e-13 77.4 47 70.2
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.4e-12 76.3 49 69.4
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.6e-11 71.6 54 63.0
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 2.3e-10 68.9 42 78.6
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 1.5e-09 66.2 54 57.4


User provided reference genes

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