Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 5.0e-103 377.9 202 100.0
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.2e-88 330.1 186 84.9
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 2.7e-88 328.9 186 89.8
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 7.7e-88 327.4 186 84.4
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 8.3e-74 280.8 191 75.9
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.8e-73 279.6 184 79.9
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 1.8e-73 279.6 187 78.1
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 4.1e-73 278.5 187 77.5
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.6e-72 276.6 183 74.9
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 1.0e-71 273.9 187 76.5
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.7e-71 273.1 205 71.7
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.7e-71 273.1 205 67.3
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.7e-71 273.1 186 72.0
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 3.9e-71 271.9 190 70.5
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 5.0e-71 271.6 187 75.9
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 5.0e-71 271.6 190 70.5
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 6.6e-71 271.2 187 75.9
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 6.6e-71 271.2 187 74.3
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 8.6e-71 270.8 190 74.7
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 1.1e-70 270.4 196 68.4
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 1.1e-70 270.4 208 65.9
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 2.5e-70 269.2 190 70.5
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.3e-70 268.9 184 74.5
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 3.3e-70 268.9 192 78.1
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.3e-70 268.5 183 71.0
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 4.3e-70 268.5 189 73.5
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 4.3e-70 268.5 187 70.1
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 4.3e-70 268.5 185 70.8
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 4.3e-70 268.5 186 76.3
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 4.3e-70 268.5 193 72.0
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 5.6e-70 268.1 190 70.5
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 7.3e-70 267.7 194 72.7
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 7.3e-70 267.7 179 76.0
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 9.5e-70 267.3 183 77.0
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 9.5e-70 267.3 193 68.4
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.2e-69 266.9 184 70.7
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.2e-69 266.9 194 74.2
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 1.2e-69 266.9 189 70.9
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 1.6e-69 266.5 191 72.3
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 3.6e-69 265.4 181 71.3
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 3.6e-69 265.4 188 78.2
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 6.1e-69 264.6 184 71.2
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 8.0e-69 264.2 186 69.4
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 8.0e-69 264.2 185 78.4
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 8.0e-69 264.2 183 73.2
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 2.3e-68 262.7 188 77.7
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 2.3e-68 262.7 190 73.2
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 2.3e-68 262.7 185 75.1
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 3.1e-68 262.3 186 79.0
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 4.0e-68 261.9 186 72.0
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 4.0e-68 261.9 190 74.7
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 4.0e-68 261.9 210 64.8
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 4.0e-68 261.9 186 69.4
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 6.8e-68 261.2 183 70.5
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 8.9e-68 260.8 187 73.3
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 8.9e-68 260.8 186 80.1
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 1.5e-67 260.0 192 67.2
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 2.6e-67 259.2 187 75.9
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 2.6e-67 259.2 204 74.0
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 3.4e-67 258.8 188 77.7
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 5.8e-67 258.1 187 73.3
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 9.8e-67 257.3 166 82.5
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.3e-66 256.9 189 68.3
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.7e-66 256.5 192 67.2
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.7e-66 256.5 181 79.0
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.7e-66 256.5 183 77.0
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 2.2e-66 256.1 179 77.7
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 2.9e-66 255.8 186 71.0
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 4.9e-66 255.0 192 67.2
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 4.9e-66 255.0 196 73.5
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 8.3e-66 254.2 183 75.4
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.9e-65 253.1 199 73.4
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 3.2e-65 252.3 175 78.9
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 4.1e-65 251.9 187 66.8
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 7.0e-65 251.1 186 69.9
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 9.2e-65 250.8 186 74.2
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 9.2e-65 250.8 186 74.2
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 9.2e-65 250.8 189 72.0
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 9.2e-65 250.8 186 79.0
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.2e-64 250.4 185 76.2
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 1.2e-64 250.4 186 73.1
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 1.2e-64 250.4 186 73.1
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 2.7e-64 249.2 187 72.7
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 4.6e-64 248.4 187 74.9
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.3e-63 246.9 186 74.7
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 6.6e-63 244.6 189 69.3
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.1e-62 243.8 185 67.0
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.1e-62 243.8 189 76.7
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.1e-62 243.8 187 69.5
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 1.5e-62 243.4 189 65.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.5e-62 243.4 186 74.2
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 4.3e-62 241.9 179 74.9
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 5.6e-62 241.5 189 76.2
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 1.2e-61 240.4 185 74.1
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.2e-61 240.4 199 69.8
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 5.8e-59 231.5 188 62.8
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.7e-58 229.9 117 88.0
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.7e-58 229.9 117 88.0
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 3.7e-58 228.8 196 64.8
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 8.3e-58 227.6 199 70.4
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-57 226.5 117 87.2
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.4e-57 226.1 190 67.4
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 3.2e-57 225.7 120 83.3
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 7.1e-57 224.6 125 81.6
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.1e-57 224.6 126 81.7
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.6e-56 223.4 111 89.2
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 1.5e-54 216.9 186 62.9
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 9.5e-54 214.2 190 62.6
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 1.2e-53 213.8 150 74.7
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 6.2e-53 211.5 119 80.7
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.1e-52 209.1 116 79.3
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 1.2e-51 207.2 177 71.2
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 5.4e-49 198.4 112 79.5
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 3.5e-48 195.7 158 72.2
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.3e-47 193.7 187 60.4
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.9e-47 192.2 93 94.6
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.6e-45 186.8 91 92.3
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 2.1e-45 186.4 94 89.4
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.2e-43 180.6 164 57.3
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 4.9e-34 148.7 82 80.5
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 4.2e-33 145.6 192 51.6
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 3.9e-31 139.0 120 71.7
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 4.3e-30 135.6 101 58.4
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 6.4e-26 121.7 61 90.2
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 1.9e-25 120.2 122 54.1
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 3.9e-23 112.5 93 54.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.3e-22 109.4 104 49.0
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.2e-21 105.1 189 49.2
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 3.2e-17 92.8 83 55.4
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 5.7e-14 82.0 113 38.1
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.9e-12 75.1 51 64.7
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.7e-10 70.5 82 46.3
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.9e-10 69.7 34 88.2
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.3e-07 60.8 93 44.1
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 5.1e-07 58.9 86 61.6
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.5e-06 57.4 83 42.2
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 1.5e-06 57.4 28 85.7


User provided reference genes

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