Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 8.3e-142 506.9 237 100.0
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-112 409.5 238 81.9
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 2.6e-111 405.6 214 89.3
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 3.4e-111 405.2 238 81.1
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 2.7e-108 395.6 235 78.3
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 3.9e-107 391.7 237 78.5
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.0e-102 377.1 197 89.8
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 4.6e-92 341.7 217 73.7
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.8e-83 313.2 224 62.5
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 3.0e-83 312.4 233 62.7
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 1.5e-82 310.1 210 64.8
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 3.3e-82 308.9 226 62.8
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 9.7e-82 307.4 210 63.8
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 2.8e-81 305.8 210 63.3
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 2.8e-81 305.8 212 63.7
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 3.7e-81 305.4 208 65.4
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 4.8e-81 305.1 208 64.9
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 6.3e-81 304.7 229 62.0
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 1.1e-80 303.9 238 59.7
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 1.4e-80 303.5 208 64.4
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 2.4e-80 302.8 200 68.0
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 3.1e-80 302.4 210 64.8
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 7.0e-80 301.2 214 62.1
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 9.1e-80 300.8 209 66.0
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 9.1e-80 300.8 238 58.8
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 9.1e-80 300.8 219 63.9
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-79 300.1 202 71.3
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 4.5e-79 298.5 192 68.8
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.3e-78 297.0 203 67.0
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 1.3e-78 297.0 224 61.6
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.2e-78 296.2 248 55.6
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 2.2e-78 296.2 236 59.7
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 5.0e-78 295.0 221 59.3
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 6.5e-78 294.7 211 61.6
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 8.5e-78 294.3 210 63.8
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 8.5e-78 294.3 234 59.8
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 2.5e-77 292.7 231 59.7
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 4.2e-77 292.0 238 56.7
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 5.5e-77 291.6 208 62.0
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.2e-76 290.4 209 62.7
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 1.2e-76 290.4 236 56.8
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 2.1e-76 289.7 212 62.3
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.7e-76 289.3 203 63.5
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 4.7e-76 288.5 208 62.0
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 4.7e-76 288.5 237 55.7
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 6.1e-76 288.1 207 61.4
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 1.8e-75 286.6 225 58.7
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 2.3e-75 286.2 228 57.9
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 3.9e-75 285.4 229 55.9
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 6.7e-75 284.6 212 59.0
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 8.8e-75 284.3 210 61.0
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.1e-74 283.9 227 57.7
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 2.0e-74 283.1 193 66.3
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 2.6e-74 282.7 196 63.8
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 4.4e-74 282.0 220 57.7
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 4.4e-74 282.0 221 57.9
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 7.4e-74 281.2 194 65.5
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.2e-73 279.6 201 61.7
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.7e-73 278.9 201 61.7
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.8e-73 278.5 201 61.2
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-72 277.3 194 63.9
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 1.1e-72 277.3 199 60.8
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-72 277.3 194 63.9
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 1.4e-72 276.9 204 60.3
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.4e-72 276.9 227 55.9
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-72 276.6 155 85.2
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 3.1e-72 275.8 198 59.1
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 5.3e-72 275.0 233 54.1
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.3e-72 275.0 244 54.1
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.3e-72 275.0 201 61.2
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 7.0e-72 274.6 227 56.4
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 7.0e-72 274.6 227 56.4
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 9.1e-72 274.2 227 56.4
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 9.1e-72 274.2 194 63.4
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 9.1e-72 274.2 225 53.3
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 3.5e-71 272.3 227 55.1
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.5e-71 272.3 194 63.4
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 4.5e-71 271.9 217 57.1
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 5.9e-71 271.6 194 62.4
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 5.9e-71 271.6 217 57.1
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 5.9e-71 271.6 228 56.6
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 1.3e-70 270.4 194 62.9
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.3e-70 270.4 227 56.4
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-70 270.0 194 62.4
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.7e-70 270.0 205 56.1
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.2e-70 269.6 228 57.0
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.0e-70 268.5 223 55.6
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 6.5e-70 268.1 185 66.5
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 6.5e-70 268.1 183 65.0
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 6.5e-70 268.1 202 61.9
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 1.1e-69 267.3 182 66.5
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 1.5e-69 266.9 217 55.8
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 1.5e-69 266.9 217 55.8
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.5e-69 265.0 211 55.9
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.2e-68 263.8 223 54.3
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.7e-68 262.7 184 65.2
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 4.7e-68 261.9 242 53.3
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 6.1e-68 261.5 217 54.8
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 1.8e-67 260.0 222 56.3
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 5.2e-67 258.5 225 54.7
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 8.8e-67 257.7 217 56.7
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 8.8e-67 257.7 194 58.2
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.4e-66 255.8 193 59.1
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 5.7e-66 255.0 187 62.0
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 9.7e-66 254.2 195 61.0
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 9.7e-66 254.2 187 61.5
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.3e-65 253.8 217 54.8
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 1.7e-65 253.4 184 62.0
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 4.8e-65 251.9 174 67.2
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 6.3e-65 251.5 201 56.7
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 8.3e-65 251.1 190 59.5
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.4e-64 250.4 227 54.6
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 7.0e-64 248.1 226 53.5
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 9.1e-64 247.7 287 45.6
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-63 246.9 194 55.7
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.6e-63 246.9 194 55.7
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-63 246.5 194 55.7
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-63 246.5 194 55.7
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 2.0e-63 246.5 194 55.7
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 2.7e-63 246.1 203 58.6
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.7e-62 243.4 192 58.9
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.5e-61 240.4 192 57.8
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 3.6e-60 235.7 229 51.5
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 1.8e-59 233.4 193 55.4
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 8.8e-59 231.1 207 50.7
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-58 229.9 179 58.1
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 3.7e-57 225.7 198 53.0
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 2.4e-56 223.0 210 46.2
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 4.1e-56 222.2 155 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 1.3e-54 217.2 208 49.5
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 8.6e-54 214.5 179 59.8
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 1.9e-53 213.4 180 56.1
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.0e-51 206.1 178 52.2
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.6e-50 203.0 208 47.6
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 1.7e-49 200.3 146 63.7
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 1.1e-48 197.6 186 48.4
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.6e-47 193.7 154 62.3
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 1.8e-43 180.3 164 51.2
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 9.2e-40 167.9 111 64.9
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 7.3e-37 158.3 118 64.4
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 2.1e-31 140.2 206 36.4
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 6.6e-30 135.2 207 39.1
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 4.7e-28 129.0 182 39.6
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 2.3e-27 126.7 241 33.6
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 3.1e-27 126.3 182 39.0
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 3.1e-27 126.3 182 39.0
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 6.8e-27 125.2 96 59.4
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 1.2e-26 124.4 200 37.0
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.2e-26 124.4 87 64.4
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 7.6e-26 121.7 206 35.4
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.3e-25 120.9 190 38.4
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.4e-24 117.5 86 51.2
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.9e-24 117.1 88 55.7
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 6.0e-23 112.1 103 52.4
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 8.6e-22 108.2 101 45.5
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.2e-20 102.1 79 63.3
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 2.6e-18 96.7 77 58.4
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 4.4e-18 95.9 78 50.0
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.8e-17 92.8 71 62.0
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 1.4e-16 90.9 164 35.4
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-15 87.4 76 55.3
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.7e-14 84.0 54 57.4
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 8.7e-14 81.6 150 36.0
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 5.6e-13 79.0 150 35.3
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 5.6e-13 79.0 150 35.3
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 1.7e-09 67.4 142 31.7
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.7e-09 67.4 36 83.3
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 2.3e-06 57.0 47 53.2


User provided reference genes

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