Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 8.8e-220 766.9 464 100.0
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 6.3e-202 707.6 465 82.4
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 7.9e-120 434.9 448 65.6
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 5.0e-114 415.6 420 60.2
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 7.4e-110 401.7 450 50.9
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.5e-107 394.0 420 51.2
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.5e-107 394.0 420 51.2
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 6.5e-106 388.7 422 49.8
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 5.5e-105 385.6 437 48.3
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 4.6e-104 382.5 447 47.0
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 6.1e-104 382.1 447 47.4
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 1.4e-103 380.9 447 47.0
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 2.3e-103 380.2 427 50.1
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 3.9e-103 379.4 424 49.5
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 1.1e-102 377.9 421 49.9
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 1.3e-101 374.4 424 50.2
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 2.6e-99 366.7 447 45.9
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 4.5e-99 365.9 423 58.2
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 4.5e-99 365.9 416 60.1
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.3e-98 364.4 447 45.4
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 3.8e-98 362.8 424 48.1
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.1e-97 361.3 447 45.9
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 1.9e-97 360.5 424 47.4
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 2.5e-97 360.1 456 44.7
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.2e-97 359.8 447 45.2
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 9.4e-97 358.2 426 48.1
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 5.1e-95 352.4 423 58.2
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 8.8e-95 351.7 444 45.9
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 2.6e-94 350.1 421 47.7
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 7.4e-94 348.6 423 44.7
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.3e-93 347.8 424 47.2
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.3e-93 347.8 422 46.9
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 6.3e-93 345.5 429 56.4
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 8.2e-93 345.1 420 45.5
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 1.8e-92 344.0 421 46.1
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 3.1e-92 343.2 422 45.0
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 4.1e-92 342.8 421 46.6
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 5.3e-92 342.4 425 45.6
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 1.2e-91 341.3 421 46.3
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 1.2e-91 341.3 421 46.3
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 2.6e-91 340.1 431 45.7
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 2.6e-91 340.1 425 44.2
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 3.5e-91 339.7 421 46.1
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 3.8e-90 336.3 421 46.3
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 3.8e-90 336.3 421 46.3
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 3.8e-90 336.3 423 45.2
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 8.5e-90 335.1 420 55.2
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 1.2e-88 331.3 454 42.3
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 3.6e-88 329.7 421 44.2
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 4.7e-88 329.3 425 44.9
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 8.0e-88 328.6 454 41.9
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 1.4e-87 327.8 421 52.7
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 1.8e-87 327.4 427 42.6
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 5.2e-87 325.9 449 43.0
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 2.8e-85 320.1 421 46.8
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 3.7e-85 319.7 426 43.4
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 4.8e-85 319.3 426 43.7
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-84 317.4 422 43.6
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 2.4e-84 317.0 426 43.2
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 4.1e-84 316.2 422 43.4
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 5.3e-84 315.8 434 42.4
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 5.3e-84 315.8 422 42.9
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 5.9e-83 312.4 429 42.4
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 5.9e-83 312.4 416 52.9
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 7.7e-83 312.0 423 43.3
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 5.0e-82 309.3 422 41.7
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 9.4e-81 305.1 416 55.5
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.2e-80 304.7 423 52.5
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 1.6e-80 304.3 418 42.3
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 2.1e-80 303.9 425 40.7
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 2.7e-80 303.5 421 53.4
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.7e-80 303.5 361 46.0
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.8e-79 300.8 430 40.7
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 2.3e-79 300.4 432 41.0
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 3.0e-79 300.1 448 51.3
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 6.8e-79 298.9 427 41.5
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 1.5e-78 297.7 422 54.3
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 3.7e-77 293.1 422 53.8
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 1.8e-76 290.8 422 53.3
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 2.4e-76 290.4 421 53.7
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 2.4e-76 290.4 422 53.1
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 2.9e-74 283.5 431 39.2
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 4.2e-73 279.6 424 39.4
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 3.6e-72 276.6 430 39.3
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 8.0e-72 275.4 441 37.4
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 1.4e-71 274.6 421 49.4
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 1.8e-71 274.2 421 39.2
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 1.2e-64 251.5 351 40.7
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 1.8e-63 247.7 360 41.4
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 2.6e-62 243.8 438 46.1
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 1.8e-55 221.1 326 40.2
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.2e-53 214.2 452 33.0
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 2.4e-52 210.7 420 33.1
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 1.2e-48 198.4 302 38.7
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 2.8e-48 197.2 285 40.7
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 1.9e-44 184.5 427 32.3
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 9.2e-44 182.2 241 43.6
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.5e-38 164.9 157 56.7
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 2.9e-37 160.6 250 38.8
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 4.9e-37 159.8 221 41.2
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.4e-36 158.3 163 50.3
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.5e-33 147.5 198 44.9
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 1.6e-27 128.3 426 32.4
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 9.0e-23 112.5 150 42.7
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 9.9e-22 109.0 170 38.2
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 4.2e-20 103.6 430 22.6
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 2.7e-19 100.9 139 37.4
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.0e-18 99.0 157 40.8
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 5.6e-17 93.2 118 39.8
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 5.6e-17 93.2 118 39.8
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 2.6e-14 84.3 127 39.4
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 5.8e-14 83.2 170 31.2
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 7.6e-14 82.8 121 35.5
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 3.8e-13 80.5 132 35.6
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 4.9e-13 80.1 129 39.5
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 4.2e-12 77.0 87 47.1
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 7.1e-12 76.3 112 38.4
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 8.7e-10 69.3 95 40.0
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 1.5e-09 68.6 103 35.0
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 5.6e-09 66.6 95 42.1
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 3.1e-07 60.8 95 35.8
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 6.9e-07 59.7 106 34.0
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 6.9e-07 59.7 107 32.7
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-07 59.3 85 34.1
MSTRG.18089 Avicennia marina HOM05D004127 ORTHO05D005119 9.0e-07 59.3 98 32.7
Thhalv10006755m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 1.5e-06 58.5 154 26.0
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 2.0e-06 58.2 95 32.6
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 2.0e-06 58.2 129 29.5
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 2.0e-06 58.2 104 30.8
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 2.0e-06 58.2 104 29.8
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 2.6e-06 57.8 95 34.7
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 2.6e-06 57.8 104 29.8
Actinidia17915 Actinidia chinensis HOM05D004127 ORTHO05D005119 3.4e-06 57.4 104 30.8
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 3.4e-06 57.4 114 34.2
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 3.4e-06 57.4 95 33.7
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 4.5e-06 57.0 95 33.7
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 4.5e-06 57.0 106 32.1
Psat0s287g0280 Pisum sativum HOM05D004127 ORTHO05D005119 4.5e-06 57.0 95 31.6
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 4.5e-06 57.0 104 28.8
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 4.5e-06 57.0 104 29.8
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 5.8e-06 56.6 104 29.8
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 5.8e-06 56.6 95 33.7
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 7.6e-06 56.2 95 31.6
Medtr7g017570 Medicago truncatula HOM05D004127 ORTHO05D005119 7.6e-06 56.2 95 32.6
SalBow3G1425 Salvia bowleyana HOM05D004127 ORTHO05D005119 7.6e-06 56.2 95 31.6
Aa31LG1G8250 Aethionema arabicum HOM05D004127 ORTHO05D005119 1.0e-05 55.8 158 25.3
Lj1g0020612 Lotus japonicus HOM05D004127 ORTHO05D005119 1.0e-05 55.8 154 26.6
Oeu058159.1 Olea europaea HOM05D004127 ORTHO05D005119 1.0e-05 55.8 98 31.6
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 1.0e-05 55.8 104 29.8
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 1.0e-05 55.8 95 34.7


User provided reference genes

Program Settings