Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 3.4e-89 331.6 169 100.0
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 8.8e-53 210.7 138 81.2
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 1.3e-51 206.8 134 79.9
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 1.8e-50 203.0 134 78.4
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 9.1e-50 200.7 128 78.9
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 2.7e-49 199.1 138 77.5
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 3.5e-49 198.7 142 75.4
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 4.5e-49 198.4 134 78.4
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 4.5e-49 198.4 133 77.4
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 1.3e-48 196.8 142 75.4
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.7e-48 196.4 142 76.8
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.7e-48 196.4 142 76.8
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 2.2e-48 196.1 142 73.2
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 3.8e-48 195.3 136 75.7
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.0e-48 194.9 138 73.9
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 8.5e-48 194.1 138 73.9
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.1e-47 193.7 141 71.6
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 1.1e-47 193.7 141 73.8
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 1.5e-47 193.4 137 73.7
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 1.9e-47 193.0 141 73.0
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 2.5e-47 192.6 137 75.2
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 2.5e-47 192.6 142 73.2
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 3.2e-47 192.2 141 73.0
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 3.2e-47 192.2 135 74.8
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 4.2e-47 191.8 134 75.4
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 5.5e-47 191.4 133 72.9
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 9.4e-47 190.7 138 73.2
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 9.4e-47 190.7 138 73.9
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 1.2e-46 190.3 141 72.3
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.2e-46 190.3 141 72.3
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.1e-46 189.5 141 71.6
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 4.7e-46 188.3 134 75.4
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 1.4e-45 186.8 127 78.0
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 2.3e-45 186.0 138 74.6
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 3.0e-45 185.7 134 72.4
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 3.0e-45 185.7 136 72.1
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 5.2e-45 184.9 138 71.7
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 5.2e-45 184.9 140 72.9
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 6.8e-45 184.5 139 70.5
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 6.8e-45 184.5 139 70.5
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 6.8e-45 184.5 139 70.5
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 6.8e-45 184.5 136 71.3
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 8.8e-45 184.1 142 71.8
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 8.8e-45 184.1 141 70.2
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.2e-44 183.7 142 71.1
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 1.5e-44 183.3 141 70.2
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 1.5e-44 183.3 140 72.1
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 2.0e-44 183.0 147 68.7
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 2.0e-44 183.0 166 63.9
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 2.6e-44 182.6 134 71.6
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 3.4e-44 182.2 138 71.0
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 3.4e-44 182.2 141 69.5
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 3.4e-44 182.2 118 78.0
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 4.4e-44 181.8 137 70.8
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 4.4e-44 181.8 142 69.0
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 4.4e-44 181.8 140 72.9
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 4.4e-44 181.8 126 74.6
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 5.7e-44 181.4 146 69.2
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 5.7e-44 181.4 116 80.2
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 9.8e-44 180.6 132 72.7
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 9.8e-44 180.6 141 68.1
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 1.3e-43 180.3 138 70.3
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 1.3e-43 180.3 134 71.6
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 1.7e-43 179.9 183 59.6
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 1.7e-43 179.9 136 69.9
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.8e-43 179.1 118 74.6
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 3.7e-43 178.7 118 76.3
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 3.7e-43 178.7 134 70.9
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 4.8e-43 178.3 118 73.7
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 4.8e-43 178.3 131 71.8
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 6.3e-43 177.9 110 83.6
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 2.4e-42 176.0 122 72.1
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 2.4e-42 176.0 141 68.1
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 3.1e-42 175.6 135 70.4
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 4.1e-42 175.3 138 68.8
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.1e-42 175.3 118 72.9
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 4.1e-42 175.3 126 70.6
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 5.4e-42 174.9 134 70.1
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 7.0e-42 174.5 137 68.6
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 7.0e-42 174.5 141 66.7
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 9.1e-42 174.1 141 66.0
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 1.2e-41 173.7 136 69.1
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 1.2e-41 173.7 136 67.6
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 1.2e-41 173.7 136 67.6
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 2.7e-41 172.6 130 70.0
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 2.7e-41 172.6 176 59.1
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 1.7e-40 169.9 117 76.1
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 5.0e-40 168.3 136 66.9
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 6.6e-40 167.9 136 66.2
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 6.6e-40 167.9 136 66.2
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 4.2e-39 165.2 134 66.4
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 7.2e-39 164.5 134 65.7
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 1.6e-38 163.3 118 72.9
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 2.1e-38 162.9 122 69.7
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 2.8e-38 162.5 137 65.7
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 4.7e-38 161.8 150 58.7
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 8.0e-38 161.0 134 65.7
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 5.2e-37 158.3 118 70.3
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 2.0e-36 156.4 129 65.1
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 5.7e-36 154.8 100 79.0
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 1.6e-33 146.7 118 66.9
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 1.7e-32 143.3 114 69.3
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 1.5e-31 140.2 112 65.2
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 1.9e-31 139.8 117 60.7
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 1.9e-31 139.8 129 58.1
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 2.5e-31 139.4 101 74.3
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 8.0e-30 134.4 122 60.7
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 1.0e-29 134.0 122 59.8
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 1.0e-29 134.0 86 79.1
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 1.4e-29 133.7 122 60.7
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 1.4e-29 133.7 122 60.7
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 1.4e-29 133.7 122 60.7
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 1.4e-29 133.7 122 60.7
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 1.8e-29 133.3 92 77.2
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 1.8e-29 133.3 122 60.7
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 5.2e-29 131.7 87 75.9
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 6.8e-29 131.3 86 76.7
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 8.9e-29 131.0 85 77.6
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 7.5e-28 127.9 118 60.2
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 2.9e-27 125.9 84 78.6
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 1.9e-26 123.2 83 77.1
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 4.1e-26 122.1 147 51.7
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 2.7e-25 119.4 93 69.9
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 4.6e-25 118.6 73 79.5
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 1.9e-23 113.2 154 44.8
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 9.5e-23 110.9 117 51.3
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 2.8e-22 109.4 117 49.6
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 4.4e-20 102.1 73 72.6
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 1.1e-13 80.9 130 41.5
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 4.0e-13 79.0 91 50.5
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 1.2e-12 77.4 84 56.0
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.3e-11 73.9 66 63.6
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.1e-10 68.9 43 76.7
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 7.1e-10 68.2 85 48.2
CBR_g10859 Chara braunii HOM05D005449 ORTHO05D006916 5.6e-07 58.5 103 35.9
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 7.3e-07 58.2 33 78.8


User provided reference genes

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