Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 5.0e-114 414.5 209 100.0
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 7.5e-78 294.3 156 90.4
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 1.5e-70 270.0 141 90.1
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.4e-68 262.7 142 88.7
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 2.4e-47 193.0 205 56.6
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 8.4e-45 184.5 198 52.0
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 2.5e-41 172.9 198 54.5
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 1.3e-40 170.6 197 54.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.1e-40 169.9 205 49.3
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 6.2e-40 168.3 208 47.1
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.8e-39 166.8 202 48.0
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.4e-39 166.4 206 48.5
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 4.0e-39 165.6 202 47.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 6.9e-39 164.9 205 49.8
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 9.0e-39 164.5 204 47.5
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 3.4e-38 162.5 207 47.8
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 4.4e-38 162.2 205 48.8
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 5.8e-38 161.8 204 47.5
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 1.3e-37 160.6 207 46.9
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.3e-37 160.6 204 46.1
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 2.2e-37 159.8 203 49.3
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.2e-37 159.8 208 46.2
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.2e-37 159.8 195 46.7
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 4.9e-37 158.7 200 47.5
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 1.1e-36 157.5 206 49.0
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.4e-36 157.1 201 47.3
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.9e-36 156.8 201 44.8
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 4.2e-36 155.6 206 45.6
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 7.1e-36 154.8 202 47.0
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 2.1e-35 153.3 201 46.3
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.7e-35 152.9 205 45.9
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 2.7e-35 152.9 201 45.8
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 4.6e-35 152.1 205 45.9
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.0e-35 151.8 205 45.4
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.7e-34 150.2 198 46.0
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.3e-34 149.8 198 46.0
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 3.0e-34 149.4 195 45.1
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.6e-34 148.3 198 45.5
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 4.3e-33 145.6 210 42.9
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 7.3e-33 144.8 202 44.6
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 9.6e-33 144.4 200 46.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.8e-32 142.9 204 46.6
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 3.6e-32 142.5 211 45.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 4.8e-32 142.1 204 46.1
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 4.8e-32 142.1 210 42.4
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 6.2e-32 141.7 194 44.3
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.4e-31 140.6 208 44.2
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.8e-31 140.2 201 46.8
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.4e-31 139.8 208 46.2
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 6.9e-31 138.3 202 43.6
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 9.0e-31 137.9 212 42.0
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 9.0e-31 137.9 204 42.2
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 1.2e-30 137.5 202 43.1
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.5e-30 137.1 202 45.5
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.0e-30 136.7 211 41.2
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.4e-30 136.0 198 42.9
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 7.6e-30 134.8 205 42.4
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 9.9e-30 134.4 196 44.4
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.7e-29 133.7 205 43.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 2.2e-29 133.3 216 42.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 2.9e-29 132.9 201 40.3
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.9e-29 132.9 196 44.9
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 3.8e-29 132.5 207 41.1
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.8e-29 132.5 207 41.1
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.8e-29 132.5 207 41.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.9e-29 132.1 207 41.5
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 4.9e-29 132.1 194 44.3
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 4.9e-29 132.1 210 41.4
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.4e-29 131.7 207 41.5
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.4e-28 130.6 207 41.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 3.2e-28 129.4 199 41.2
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 7.1e-28 128.3 207 42.0
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.2e-27 127.5 211 44.1
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.2e-27 127.5 203 40.9
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.5e-27 125.9 208 42.3
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 6.0e-27 125.2 208 43.8
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 7.9e-27 124.8 206 42.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.0e-26 124.4 205 41.0
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.8e-26 123.6 205 42.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 3.0e-26 122.9 193 40.9
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.9e-26 122.5 193 39.4
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 6.7e-26 121.7 193 40.9
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-25 120.9 195 40.5
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 1.1e-25 120.9 130 53.8
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.1e-25 120.9 204 42.2
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.5e-25 120.6 202 39.1
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 2.5e-25 119.8 126 52.4
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 4.3e-25 119.0 212 37.3
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 5.6e-25 118.6 181 40.9
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.3e-24 117.5 229 38.9
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 2.1e-24 116.7 224 37.1
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.8e-24 116.3 210 38.6
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.8e-24 116.3 214 36.9
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 3.7e-24 115.9 165 44.2
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 3.7e-24 115.9 210 37.6
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.1e-24 114.8 209 40.2
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.1e-24 114.8 212 37.3
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-23 114.4 214 36.4
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-23 114.4 212 38.2
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-23 114.4 202 37.1
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 1.4e-23 114.0 216 39.8
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 1.8e-23 113.6 210 36.2
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 1.8e-23 113.6 212 40.6
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 2.4e-23 113.2 209 37.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 3.1e-23 112.8 208 37.0
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.1e-23 112.8 219 35.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 3.1e-23 112.8 222 36.5
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 5.3e-23 112.1 142 47.9
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.0e-23 111.3 201 38.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.2e-22 110.9 167 43.7
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-22 110.5 198 36.9
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 2.0e-22 110.2 198 36.9
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.6e-22 109.8 217 37.8
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.6e-22 109.8 215 37.7
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.4e-22 109.4 212 37.3
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.5e-22 109.0 179 40.2
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 4.5e-22 109.0 195 37.4
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 7.6e-22 108.2 161 46.6
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.0e-21 107.8 215 39.1
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 1.3e-21 107.5 199 37.7
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.3e-21 107.5 194 37.1
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.7e-21 107.1 215 38.1
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.7e-21 107.1 217 38.2
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 1.7e-21 107.1 210 34.3
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-21 106.7 193 36.8
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.2e-21 106.7 194 37.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 2.9e-21 106.3 216 36.6
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 3.8e-21 105.9 198 35.9
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.8e-21 105.9 212 36.3
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 4.9e-21 105.5 193 36.8
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 8.4e-21 104.8 218 40.4
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 1.1e-20 104.4 195 34.9
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.1e-20 104.4 214 36.4
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.5e-20 103.2 193 37.8
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.5e-20 103.2 209 37.8
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 2.5e-20 103.2 209 37.8
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 3.2e-20 102.8 195 34.9
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 3.2e-20 102.8 200 37.5
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 4.2e-20 102.4 208 38.0
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 5.5e-20 102.1 194 35.1
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.1e-20 101.7 179 37.4
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 9.3e-20 101.3 205 34.6
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.2e-19 100.9 201 35.3
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.2e-19 100.9 211 38.9
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.7e-19 99.8 190 34.7
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.3e-18 97.4 203 35.5
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.9e-18 95.9 204 35.8
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 6.7e-18 95.1 194 34.5
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-18 95.1 193 35.2
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 6.7e-18 95.1 207 35.7
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 6.7e-18 95.1 134 48.5
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 8.7e-18 94.7 193 34.7
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 8.7e-18 94.7 204 37.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 7.4e-17 91.7 183 33.9
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 9.6e-17 91.3 192 34.4
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-16 90.1 201 32.3
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 2.1e-16 90.1 201 32.3
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 2.1e-16 90.1 194 35.6
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 2.8e-16 89.7 202 32.2
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.8e-16 89.7 211 33.2
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 2.8e-16 89.7 203 34.0
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.7e-16 89.4 131 44.3
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 8.2e-16 88.2 297 31.3
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.4e-15 87.4 202 36.6
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.8e-15 87.0 202 33.2
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-15 86.7 209 35.4
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 3.1e-15 86.3 210 33.8
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 3.1e-15 86.3 198 35.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 5.3e-15 85.5 209 34.9
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 5.3e-15 85.5 207 35.3
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 5.3e-15 85.5 184 33.7
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-14 83.2 202 33.2
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 4.5e-14 82.4 209 33.0
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.8e-13 79.3 209 32.5
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 5.0e-13 79.0 207 32.4
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 8.4e-13 78.2 200 35.0
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 8.4e-13 78.2 138 39.1
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.5e-12 76.6 92 47.8
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 4.6e-11 72.4 142 38.0
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.0e-10 71.2 42 83.3
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 6.7e-10 68.6 140 33.6
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.3e-08 64.3 213 30.5
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.0e-06 57.0 68 48.5
SEGI_01918 Sequoiadendron giganteum HOM05D003703 ORTHO05D004278 5.9e-06 55.5 38 71.1


User provided reference genes

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