Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G1966 Papaver somniferum HOM05D007940 ORTHO05D010046 1.7e-69 265.8 126 100.0
Nn7g38154 Nelumbo nucifera HOM05D007940 ORTHO05D010046 2.1e-19 99.4 60 73.3
QL11p017779 Quercus lobata HOM05D007940 ORTHO05D010046 1.1e-18 97.1 55 76.4
Actinidia33707 Actinidia chinensis HOM05D007940 ORTHO05D010046 3.1e-18 95.5 59 69.5
Migut.M01978 Erythranthe guttata HOM05D007940 ORTHO05D010046 6.9e-18 94.4 88 54.5
RcHm_v2.0_Chr5g0020061 Rosa chinensis HOM05D007940 ORTHO05D010046 6.9e-18 94.4 94 53.2
Ca_01891_v3 Cicer arietinum L. HOM05D007940 ORTHO05D010046 9.0e-18 94.0 85 52.9
SalBow6G6284 Salvia bowleyana HOM05D007940 ORTHO05D010046 1.2e-17 93.6 61 67.2
SalBow8G3130 Salvia bowleyana HOM05D007940 ORTHO05D010046 1.2e-17 93.6 61 67.2
Thecc.06G142100 Theobroma cacao HOM05D007940 ORTHO05D010046 2.0e-17 92.8 75 56.0
CSS0023427 Camellia sinensis var. sinensis HOM05D007940 ORTHO05D010046 2.6e-17 92.4 55 72.7
ClCG01G009440 Citrullus lanatus HOM05D007940 ORTHO05D010046 2.6e-17 92.4 71 60.6
Cc09_g06150 Coffea canephora HOM05D007940 ORTHO05D010046 2.6e-17 92.4 56 71.4
FAN16G1222 Fragaria x ananassa HOM05D007940 ORTHO05D010046 3.4e-17 92.0 61 68.9
MELO3C021755.2 Cucumis melo HOM05D007940 ORTHO05D010046 4.4e-17 91.7 71 60.6
Glyma.15G146300 Glycine max HOM05D007940 ORTHO05D010046 5.8e-17 91.3 54 74.1
Oeu008726.1 Olea europaea HOM05D007940 ORTHO05D010046 5.8e-17 91.3 63 68.3
Sabra15G0137900 Salix brachista HOM05D007940 ORTHO05D010046 9.9e-17 90.5 68 57.4
Manes.16G057400 Manihot esculenta HOM05D007940 ORTHO05D010046 1.3e-16 90.1 61 63.9
Potri.015G121500 Populus trichocarpa HOM05D007940 ORTHO05D010046 1.7e-16 89.7 68 57.4
SGA_v2.0_scaffold298G47684 Striga asiatica HOM05D007940 ORTHO05D010046 1.7e-16 89.7 61 63.9
Hma1.2p1_0040F.1_g025155 Hydrangea macrophylla HOM05D007940 ORTHO05D010046 2.2e-16 89.4 57 70.2
Manes.16G056500 Manihot esculenta HOM05D007940 ORTHO05D010046 2.2e-16 89.4 61 63.9
TPR.G22024 Trifolium pratense HOM05D007940 ORTHO05D010046 2.9e-16 89.0 61 65.6
Aqoxy3G00719 Aquilegia oxysepala HOM05D007940 ORTHO05D010046 4.9e-16 88.2 72 52.8
Sc16g0011710 Simmondsia chinensis HOM05D007940 ORTHO05D010046 4.9e-16 88.2 55 69.1
Aa31LG2G15120 Aethionema arabicum HOM05D007940 ORTHO05D010046 6.4e-16 87.8 58 65.5
Lalb_Chr07g0188831 Lupinus albus HOM05D007940 ORTHO05D010046 6.4e-16 87.8 54 74.1
TWI38G0312 Tripterygium wilfordii HOM05D007940 ORTHO05D010046 8.4e-16 87.4 55 69.1
Eucgr.D01043 Eucalyptus grandis HOM05D007940 ORTHO05D010046 1.4e-15 86.7 59 67.8
Atru.chr10.309 Acer truncatum HOM05D007940 ORTHO05D010046 1.9e-15 86.3 54 68.5
Duzib235G0199 Durio zibethinus HOM05D007940 ORTHO05D010046 1.9e-15 86.3 58 63.8
Medtr2g435250 Medicago truncatula HOM05D007940 ORTHO05D010046 1.9e-15 86.3 60 65.0
DCAR_003782 Daucus carota HOM05D007940 ORTHO05D010046 2.4e-15 85.9 57 64.9
Sed0008509 Sechium edule HOM05D007940 ORTHO05D010046 3.2e-15 85.5 55 67.3
MD05G1252500 Malus domestica HOM05D007940 ORTHO05D010046 5.4e-15 84.7 61 63.9
Phvul.009G252500 Phaseolus vulgaris HOM05D007940 ORTHO05D010046 7.1e-15 84.3 54 68.5
Lsat_1_v5_gn_5_23140 Lactuca sativa HOM05D007940 ORTHO05D010046 1.2e-14 83.6 53 58.5
Psat1g156840 Pisum sativum HOM05D007940 ORTHO05D010046 1.2e-14 83.6 58 62.1
EL10Ac4g10315 Beta vulgaris HOM05D007940 ORTHO05D010046 1.6e-14 83.2 61 59.0
Ah.06g193510 Amaranthus hybridus HOM05D007940 ORTHO05D010046 2.1e-14 82.8 55 67.3
MD10G1233500 Malus domestica HOM05D007940 ORTHO05D010046 2.1e-14 82.8 61 62.3
Prupe.4G111600 Prunus persica HOM05D007940 ORTHO05D010046 3.5e-14 82.0 56 66.1
AL1G49310 Arabidopsis lyrata HOM05D007940 ORTHO05D010046 4.6e-14 81.6 55 61.8
AT1G31175 Arabidopsis thaliana HOM05D007940 ORTHO05D010046 4.6e-14 81.6 55 61.8
Thhalv10009859m.g Eutrema salsugineum HOM05D007940 ORTHO05D010046 4.6e-14 81.6 55 61.8
FAN21G0368 Fragaria x ananassa HOM05D007940 ORTHO05D010046 4.6e-14 81.6 61 63.9
HanXRQChr04g0109371 Helianthus annuus HOM05D007940 ORTHO05D010046 4.6e-14 81.6 56 53.6
Carub.0001s2958 Capsella rubella HOM05D007940 ORTHO05D010046 6.0e-14 81.3 55 61.8
Cfa019394 Carpinus fangiana HOM05D007940 ORTHO05D010046 6.0e-14 81.3 55 63.6
A09p35060 Brassica napus HOM05D007940 ORTHO05D010046 7.9e-14 80.9 74 48.6
BraA09t39037Z Brassica rapa HOM05D007940 ORTHO05D010046 7.9e-14 80.9 74 48.6
CARHR030670 Cardamine hirsuta HOM05D007940 ORTHO05D010046 7.9e-14 80.9 54 63.0
MBI02_g13338_MAGBIO Magnolia biondii HOM05D007940 ORTHO05D010046 1.7e-13 79.7 54 68.5
Sp1g27000 Schrenkiella parvula HOM05D007940 ORTHO05D010046 1.7e-13 79.7 55 60.0
Solyc11g020710.2 Solanum lycopersicum HOM05D007940 ORTHO05D010046 2.3e-13 79.3 55 61.8
Sopen11g010730 Solanum pennellii HOM05D007940 ORTHO05D010046 2.3e-13 79.3 55 61.8
BcaB07g32779 Brassica carinata HOM05D007940 ORTHO05D010046 3.0e-13 79.0 55 60.0
CsaV3_1G046330 Cucumis sativus L. HOM05D007940 ORTHO05D010046 3.9e-13 78.6 48 68.8
THA.LOC104798551 Tarenaya hassleriana HOM05D007940 ORTHO05D010046 3.9e-13 78.6 71 52.1
BcaC05g27148 Brassica carinata HOM05D007940 ORTHO05D010046 8.7e-13 77.4 73 47.9
BcaC09g51575 Brassica carinata HOM05D007940 ORTHO05D010046 8.7e-13 77.4 73 47.9
BolC1t01151H Brassica oleracea HOM05D007940 ORTHO05D010046 8.7e-13 77.4 73 47.9
TAR624G1282 Trochodendron aralioides HOM05D007940 ORTHO05D010046 1.5e-12 76.6 52 65.4
COL.COLO4_30989 Corchorus olitorius HOM05D007940 ORTHO05D010046 3.3e-12 75.5 74 48.6
CANSAT35G1488 Cannabis sativa HOM05D007940 ORTHO05D010046 8.1e-11 70.9 54 59.3
HPP92_017565 Vanilla planifolia HOM05D007940 ORTHO05D010046 6.9e-10 67.8 55 58.2
Ciclev10017318m.g Citrus clementina HOM05D007940 ORTHO05D010046 1.2e-09 67.0 55 56.4
Os07g0567500 Oryza sativa ssp. japonica HOM05D007940 ORTHO05D010046 5.8e-09 64.7 55 54.5
Gohir.D05G147600 Gossypium hirsutum HOM05D007940 ORTHO05D010046 1.7e-08 63.2 80 42.5
Zm00001eb107160 Zea mays HOM05D007940 ORTHO05D010046 1.9e-07 59.7 55 49.1
Gohir.D05G147732 Gossypium hirsutum HOM05D007940 ORTHO05D010046 2.4e-07 59.3 80 41.2
Gorai.009G151700 Gossypium raimondii HOM05D007940 ORTHO05D010046 2.4e-07 59.3 80 41.2
FAN12G0891 Fragaria x ananassa HOM05D007940 ORTHO05D010046 1.2e-06 57.0 62 48.4
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 1.2e-06 57.0 62 48.4
SEGI_25488 Sequoiadendron giganteum HOM05D007940 ORTHO05D010046 1.2e-06 57.0 60 41.7
FAN24G2461 Fragaria x ananassa HOM05D000188 ORTHO05D000362 4.6e-06 55.1 42 57.1


User provided reference genes

Program Settings