Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G1352 Papaver somniferum HOM05D003692 ORTHO05D004295 2.1e-52 208.8 107 100.0
PSO339G0014 Papaver somniferum HOM05D003692 ORTHO05D004295 1.4e-40 169.5 112 81.2
PSO513G0124 Papaver somniferum HOM05D003692 ORTHO05D004295 2.7e-39 165.2 112 79.5
PSO478G2467 Papaver somniferum HOM05D003692 ORTHO05D004295 5.1e-38 161.0 112 75.9
GSVIVG01034132001 Vitis vinifera HOM05D003692 ORTHO05D004295 9.6e-37 156.8 112 73.2
QL07p030140 Quercus lobata HOM05D003692 ORTHO05D004295 1.2e-36 156.4 112 74.1
CSS0021952 Camellia sinensis var. sinensis HOM05D003692 ORTHO05D004295 2.8e-36 155.2 112 73.2
Peaxi162Scf00527g00735 Petunia axillaris HOM05D003692 ORTHO05D004295 4.7e-36 154.5 112 73.2
QL07p030873 Quercus lobata HOM05D003692 ORTHO05D004295 4.7e-36 154.5 112 73.2
MBI05_g35626_MAGBIO Magnolia biondii HOM05D003692 ORTHO05D004295 6.2e-36 154.1 109 75.2
Thecc.05G036000 Theobroma cacao HOM05D003692 ORTHO05D004295 6.2e-36 154.1 112 72.3
CAN.G947.5 Capsicum annuum HOM05D003692 ORTHO05D004295 8.1e-36 153.7 110 73.6
Gohir.A04G083600 Gossypium hirsutum HOM05D003692 ORTHO05D004295 8.1e-36 153.7 112 72.3
Lj2A91G57 Lonicera japonica HOM05D003692 ORTHO05D004295 1.1e-35 153.3 112 72.3
Potri.006G088000 Populus trichocarpa HOM05D003692 ORTHO05D004295 1.4e-35 152.9 112 71.4
Manes.09G092685 Manihot esculenta HOM05D003692 ORTHO05D004295 2.4e-35 152.1 112 72.3
TAR369G0528 Trochodendron aralioides HOM05D003692 ORTHO05D004295 2.4e-35 152.1 112 71.4
Duzib128G0550 Durio zibethinus HOM05D003692 ORTHO05D004295 3.1e-35 151.8 112 70.5
Potri.016G100500 Populus trichocarpa HOM05D003692 ORTHO05D004295 3.1e-35 151.8 112 69.6
TWI38G1706 Tripterygium wilfordii HOM05D003692 ORTHO05D004295 3.1e-35 151.8 112 70.5
PGSC0003DMG400008824 Solanum tuberosum HOM05D003692 ORTHO05D004295 4.0e-35 151.4 112 72.3
SGA_v2.0_scaffold126G33762 Striga asiatica HOM05D003692 ORTHO05D004295 4.0e-35 151.4 112 70.5
TAR560G0002 Trochodendron aralioides HOM05D003692 ORTHO05D004295 4.0e-35 151.4 112 71.4
CAN.G397.48 Capsicum annuum HOM05D003692 ORTHO05D004295 5.2e-35 151.0 112 71.4
Gohir.D04G122300 Gossypium hirsutum HOM05D003692 ORTHO05D004295 5.2e-35 151.0 112 70.5
Gorai.012G105200 Gossypium raimondii HOM05D003692 ORTHO05D004295 5.2e-35 151.0 112 70.5
Medtr4g021570 Medicago truncatula HOM05D003692 ORTHO05D004295 5.2e-35 151.0 112 71.4
TAR623G0629 Trochodendron aralioides HOM05D003692 ORTHO05D004295 5.2e-35 151.0 112 71.4
vmacro20176 Vaccinium macrocarpon HOM05D003692 ORTHO05D004295 5.2e-35 151.0 112 71.4
CsaV3_4G025150 Cucumis sativus L. HOM05D003692 ORTHO05D004295 9.0e-35 150.2 112 71.4
Dinv35578 Davidia involucrata HOM05D003692 ORTHO05D004295 9.0e-35 150.2 112 70.5
Aqoxy1G00886 Aquilegia oxysepala HOM05D003692 ORTHO05D004295 1.2e-34 149.8 112 68.8
Lj3g0027938 Lotus japonicus HOM05D003692 ORTHO05D004295 1.2e-34 149.8 112 70.5
CANSAT35G0909 Cannabis sativa HOM05D003692 ORTHO05D004295 1.5e-34 149.4 112 72.3
Nn2g13418 Nelumbo nucifera HOM05D003692 ORTHO05D004295 1.5e-34 149.4 112 69.6
Sabra06G0067100 Salix brachista HOM05D003692 ORTHO05D004295 1.5e-34 149.4 108 73.1
Cfa017343 Carpinus fangiana HOM05D003692 ORTHO05D004295 2.0e-34 149.1 112 70.5
CiPaw.09G195400 Carya illinoinensis HOM05D003692 ORTHO05D004295 2.0e-34 149.1 112 69.6
Prupe.6G258500 Prunus persica HOM05D003692 ORTHO05D004295 2.0e-34 149.1 112 72.3
Ciclev10011911m.g Citrus clementina HOM05D003692 ORTHO05D004295 2.6e-34 148.7 112 69.6
Dinv37149 Davidia involucrata HOM05D003692 ORTHO05D004295 2.6e-34 148.7 110 71.8
Sed0012536 Sechium edule HOM05D003692 ORTHO05D004295 2.6e-34 148.7 112 70.5
MSTRG.19074 Avicennia marina HOM05D003692 ORTHO05D004295 3.4e-34 148.3 112 70.5
Phvul.010G011500 Phaseolus vulgaris HOM05D003692 ORTHO05D004295 3.4e-34 148.3 112 69.6
Psat7g237280 Pisum sativum HOM05D003692 ORTHO05D004295 3.4e-34 148.3 112 69.6
VMungo0331G1001 Vigna mungo HOM05D003692 ORTHO05D004295 3.4e-34 148.3 112 68.8
CDE07G1498 Ceratophyllum demersum HOM05D003692 ORTHO05D004295 4.4e-34 147.9 112 69.6
MELO3C003143.2 Cucumis melo HOM05D003692 ORTHO05D004295 4.4e-34 147.9 112 71.4
Glyma.03G070400 Glycine max HOM05D003692 ORTHO05D004295 4.4e-34 147.9 112 68.8
Hma1.2p1_0877F.1_g231720 Hydrangea macrophylla HOM05D003692 ORTHO05D004295 4.4e-34 147.9 112 70.5
Solyc09g011030.3 Solanum lycopersicum HOM05D003692 ORTHO05D004295 4.4e-34 147.9 112 70.5
ATR0559G081 Amborella trichopoda HOM05D003692 ORTHO05D004295 5.8e-34 147.5 112 68.8
arahy.Tifrunner.gnm1.ann1.C3169U Arachis hypogaea HOM05D003692 ORTHO05D004295 5.8e-34 147.5 112 68.8
arahy.Tifrunner.gnm1.ann1.R5ZI8K Arachis hypogaea HOM05D003692 ORTHO05D004295 5.8e-34 147.5 112 68.8
MSTRG.10251 Avicennia marina HOM05D003692 ORTHO05D004295 5.8e-34 147.5 112 67.9
ClCG04G008060 Citrullus lanatus HOM05D003692 ORTHO05D004295 7.6e-34 147.1 110 70.9
HanXRQChr13g0406761 Helianthus annuus HOM05D003692 ORTHO05D004295 7.6e-34 147.1 112 68.8
MD12G1145000 Malus domestica HOM05D003692 ORTHO05D004295 7.6e-34 147.1 110 70.9
Actinidia26484 Actinidia chinensis HOM05D003692 ORTHO05D004295 9.9e-34 146.7 112 71.4
Cc06_g02380 Coffea canephora HOM05D003692 ORTHO05D004295 9.9e-34 146.7 112 69.6
Actinidia11270 Actinidia chinensis HOM05D003692 ORTHO05D004295 2.2e-33 145.6 111 71.2
Haze_20825 Corylus avellana HOM05D003692 ORTHO05D004295 2.2e-33 145.6 112 68.8
MD04G1131900 Malus domestica HOM05D003692 ORTHO05D004295 2.2e-33 145.6 112 69.6
Oeu001856.1 Olea europaea HOM05D003692 ORTHO05D004295 2.2e-33 145.6 110 70.0
Rhsim05G0194700 Rhododendron simsii HOM05D003692 ORTHO05D004295 2.9e-33 145.2 110 69.1
HanXRQChr01g0003311 Helianthus annuus HOM05D003692 ORTHO05D004295 3.8e-33 144.8 112 67.9
Sopen09g005760 Solanum pennellii HOM05D003692 ORTHO05D004295 3.8e-33 144.8 112 69.6
Lsat_1_v5_gn_5_154881 Lactuca sativa HOM05D003692 ORTHO05D004295 1.1e-32 143.3 112 67.0
Actinidia05324 Actinidia chinensis HOM05D003692 ORTHO05D004295 1.4e-32 142.9 112 67.9
Nitab4.5_0000705g0070 Nicotiana tabacum HOM05D003692 ORTHO05D004295 1.4e-32 142.9 112 69.6
AUR62043522 Chenopodium quinoa HOM05D003692 ORTHO05D004295 1.9e-32 142.5 112 66.1
Lj3A965G75 Lonicera japonica HOM05D003692 ORTHO05D004295 1.9e-32 142.5 112 67.9
unitig_8.g4279 Utricularia gibba HOM05D003692 ORTHO05D004295 2.4e-32 142.1 112 66.1
Ah.12g059970 Amaranthus hybridus HOM05D003692 ORTHO05D004295 3.2e-32 141.7 112 66.1
SGA_v2.0_scaffold75G24963 Striga asiatica HOM05D003692 ORTHO05D004295 4.2e-32 141.4 111 68.5
AUR62042383 Chenopodium quinoa HOM05D003692 ORTHO05D004295 5.4e-32 141.0 109 67.9
Zm00001eb062800 Zea mays HOM05D003692 ORTHO05D004295 5.4e-32 141.0 112 66.1
Os03g0822700 Oryza sativa ssp. japonica HOM05D003692 ORTHO05D004295 7.1e-32 140.6 112 67.0
CARHR083710 Cardamine hirsuta HOM05D003692 ORTHO05D004295 9.3e-32 140.2 112 67.9
Oeu023073.1 Olea europaea HOM05D003692 ORTHO05D004295 1.2e-31 139.8 110 68.2
AL3G20500 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 1.6e-31 139.4 112 66.1
AT3G09350 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 1.6e-31 139.4 112 66.1
THA.LOC104816257 Tarenaya hassleriana HOM05D003692 ORTHO05D004295 1.6e-31 139.4 112 65.2
RcHm_v2.0_Chr3g0462931 Rosa chinensis HOM05D003692 ORTHO05D004295 2.1e-31 139.0 112 67.9
Hund07755 Selenicereus undatus HOM05D003692 ORTHO05D004295 2.1e-31 139.0 108 68.5
SGA_v2.0_scaffold94G28572 Striga asiatica HOM05D003692 ORTHO05D004295 3.5e-31 138.3 112 64.3
CAN.G132.11 Capsicum annuum HOM05D003692 ORTHO05D004295 4.6e-31 137.9 109 68.8
Thhalv10010482m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 4.6e-31 137.9 110 64.5
CSS0018872 Camellia sinensis var. sinensis HOM05D003692 ORTHO05D004295 6.0e-31 137.5 112 65.2
Nitab4.5_0003394g0020 Nicotiana tabacum HOM05D003692 ORTHO05D004295 6.0e-31 137.5 112 67.9
Os03g0271400 Oryza sativa ssp. japonica HOM05D003692 ORTHO05D004295 7.8e-31 137.1 112 61.6
Aa31LG3G1840 Aethionema arabicum HOM05D003692 ORTHO05D004295 1.0e-30 136.7 112 65.2
Carub.0005s2038 Capsella rubella HOM05D003692 ORTHO05D004295 1.0e-30 136.7 110 63.6
ECA248G3834 Erigeron canadensis HOM05D003692 ORTHO05D004295 1.3e-30 136.3 112 64.3
BcaC05g29519 Brassica carinata HOM05D003692 ORTHO05D004295 1.7e-30 136.0 112 65.2
BcaC05g29662 Brassica carinata HOM05D003692 ORTHO05D004295 1.7e-30 136.0 112 65.2
C05p58660 Brassica napus HOM05D003692 ORTHO05D004295 1.7e-30 136.0 112 65.2
BolC5t34516H Brassica oleracea HOM05D003692 ORTHO05D004295 1.7e-30 136.0 112 65.2
BraA05t22745Z Brassica rapa HOM05D003692 ORTHO05D004295 1.7e-30 136.0 112 65.2
Carub.0003s0846 Capsella rubella HOM05D003692 ORTHO05D004295 1.7e-30 136.0 112 64.3
Sp3g07730 Schrenkiella parvula HOM05D003692 ORTHO05D004295 1.7e-30 136.0 112 64.3
Atru.chr8.2010 Acer truncatum HOM05D003692 ORTHO05D004295 3.0e-30 135.2 112 67.0
Thhalv10020978m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 3.0e-30 135.2 112 64.3
EL10As1g23134 Beta vulgaris HOM05D003692 ORTHO05D004295 6.6e-30 134.0 112 61.6
A03p36010 Brassica napus HOM05D003692 ORTHO05D004295 6.6e-30 134.0 112 63.4
BcaB03g11607 Brassica carinata HOM05D003692 ORTHO05D004295 8.7e-30 133.7 112 65.2
SEGI_14146 Sequoiadendron giganteum HOM05D003692 ORTHO05D004295 8.7e-30 133.7 112 64.3
BcaC01g04230 Brassica carinata HOM05D003692 ORTHO05D004295 1.5e-29 132.9 112 63.4
C03p43660 Brassica napus HOM05D003692 ORTHO05D004295 1.5e-29 132.9 112 63.4
FAN02G3395 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.5e-29 132.9 112 65.2
FAN05G1146 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.5e-29 132.9 112 65.2
Zm00001eb211620 Zea mays HOM05D003692 ORTHO05D004295 1.5e-29 132.9 111 62.2
BolC3t16634H Brassica oleracea HOM05D003692 ORTHO05D004295 1.9e-29 132.5 112 62.5
FvH4_6g11350 Fragaria vesca HOM05D003692 ORTHO05D004295 1.9e-29 132.5 112 64.3
FAN14G0506 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.9e-29 132.5 112 64.3
FAN09G2852 Fragaria x ananassa HOM05D003692 ORTHO05D004295 2.5e-29 132.1 112 65.2
FAN14G3612 Fragaria x ananassa HOM05D003692 ORTHO05D004295 4.3e-29 131.3 112 63.4
HPP92_006643 Vanilla planifolia HOM05D003692 ORTHO05D004295 5.6e-29 131.0 112 62.5
SEGI_33439 Sequoiadendron giganteum HOM05D003692 ORTHO05D004295 9.6e-29 130.2 111 64.0
BraA03t12773Z Brassica rapa HOM05D003692 ORTHO05D004295 1.6e-28 129.4 112 62.5
Thhalv10014140m.g Eutrema salsugineum HOM05D003692 ORTHO05D004295 1.1e-27 126.7 112 60.7
Pp3c5_26180 Physcomitrium patens HOM05D003692 ORTHO05D004295 1.4e-27 126.3 112 58.9
AL6G11380 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 1.8e-27 125.9 112 58.0
AT5G02150 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 2.4e-27 125.6 112 58.0
CARHR211210 Cardamine hirsuta HOM05D003692 ORTHO05D004295 3.1e-27 125.2 110 60.9
FvH4_5g15390 Fragaria vesca HOM05D003692 ORTHO05D004295 3.1e-27 125.2 113 62.8
FAN18G0330 Fragaria x ananassa HOM05D003692 ORTHO05D004295 3.1e-27 125.2 113 62.8
RcHm_v2.0_Chr7g0180681 Rosa chinensis HOM05D003692 ORTHO05D004295 4.0e-27 124.8 113 64.6
CAN.G771.68 Capsicum annuum HOM05D003692 ORTHO05D004295 1.2e-26 123.2 118 61.0
FAN08G2733 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.2e-26 123.2 113 61.9
Carub.0006s0099 Capsella rubella HOM05D003692 ORTHO05D004295 2.0e-26 122.5 110 59.1
AagrBONN_evm.TU.Sc2ySwM_368.3385 Anthoceros agrestis HOM05D003692 ORTHO05D004295 1.4e-24 116.3 112 56.2
Lalb_Chr12g0209541 Lupinus albus HOM05D003692 ORTHO05D004295 2.7e-23 112.1 112 56.2
Eucgr.A01287 Eucalyptus grandis HOM05D003692 ORTHO05D004295 4.6e-23 111.3 112 55.4
CBR_g66724 Chara braunii HOM05D003692 ORTHO05D004295 1.8e-22 109.4 112 51.8
COL.COLO4_14767 Corchorus olitorius HOM05D003692 ORTHO05D004295 5.1e-22 107.8 112 54.5
Cpa.g.sc40.66 Carica papaya HOM05D003692 ORTHO05D004295 6.7e-22 107.5 111 54.1
Migut.J00308 Erythranthe guttata HOM05D003692 ORTHO05D004295 1.1e-21 106.7 112 56.2
FAN13G1535 Fragaria x ananassa HOM05D003692 ORTHO05D004295 1.1e-21 106.7 94 63.8
AL5G34790 Arabidopsis lyrata HOM05D003692 ORTHO05D004295 3.3e-21 105.1 110 51.8
A05p39620 Brassica napus HOM05D002396 ORTHO05D004295 7.4e-21 104.0 112 52.7
Glyma.01G103200 Glycine max HOM05D003692 ORTHO05D004295 1.6e-20 102.8 112 51.8
CAN.G597.5 Capsicum annuum HOM05D003692 ORTHO05D004295 2.8e-20 102.1 98 61.2
BcaB04g18532 Brassica carinata HOM05D003692 ORTHO05D004295 4.0e-19 98.2 106 54.7
ECA248G3146 Erigeron canadensis HOM05D003692 ORTHO05D004295 9.0e-19 97.1 106 52.8
Ca_11500_v3 Cicer arietinum L. HOM05D003692 ORTHO05D004295 2.0e-18 95.9 112 50.0
PGR031G2878 Punica granatum HOM05D003692 ORTHO05D004295 2.0e-18 95.9 112 50.0
Pp3c16_19440 Physcomitrium patens HOM05D003692 ORTHO05D004295 9.9e-18 93.6 112 47.3
Lalb_Chr07g0192991 Lupinus albus HOM05D003692 ORTHO05D004295 2.2e-17 92.4 112 48.2
TPR.G5579 Trifolium pratense HOM05D003692 ORTHO05D004295 2.2e-17 92.4 110 50.0
ECA248G3804 Erigeron canadensis HOM05D003692 ORTHO05D004295 8.4e-17 90.5 106 50.0
Sc07g0007060 Simmondsia chinensis HOM05D003692 ORTHO05D004295 1.9e-16 89.4 110 48.2
AT3G53800 Arabidopsis thaliana HOM05D003692 ORTHO05D004295 3.2e-16 88.6 110 47.3
Mapoly0070s0083 Marchantia polymorpha HOM05D003692 ORTHO05D004295 3.2e-16 88.6 112 46.4
DCAR_012112 Daucus carota HOM05D003692 ORTHO05D004295 7.1e-16 87.4 112 45.5
BcaB01g00236 Brassica carinata HOM05D003692 ORTHO05D004295 9.3e-16 87.0 110 47.3
BcaC07g39737 Brassica carinata HOM05D003692 ORTHO05D004295 1.2e-15 86.7 110 47.3
A09p46790 Brassica napus HOM05D003692 ORTHO05D004295 1.2e-15 86.7 110 47.3
C08p29100 Brassica napus HOM05D003692 ORTHO05D004295 1.2e-15 86.7 110 47.3
BolC8t50511H Brassica oleracea HOM05D003692 ORTHO05D004295 1.2e-15 86.7 110 47.3
BraA09t40139Z Brassica rapa HOM05D003692 ORTHO05D004295 2.1e-15 85.9 110 47.3
CARHR163710 Cardamine hirsuta HOM05D003692 ORTHO05D004295 2.1e-15 85.9 104 49.0
THA.LOC104823413 Tarenaya hassleriana HOM05D003692 ORTHO05D004295 2.1e-15 85.9 112 47.3
Sp5g08580 Schrenkiella parvula HOM05D003692 ORTHO05D004295 3.5e-15 85.1 110 47.3
QL07p026959 Quercus lobata HOM05D003692 ORTHO05D004295 1.0e-14 83.6 84 58.3
Zm00001eb012160 Zea mays HOM05D003692 ORTHO05D004295 1.0e-14 83.6 59 69.5
SMO302G0018 Selaginella moellendorffii HOM05D003692 ORTHO05D004295 3.0e-14 82.0 112 42.0
Cre09.g397512 Chlamydomonas reinhardtii HOM05D003692 ORTHO05D004295 5.8e-10 67.8 109 39.4
C05p47620 Brassica napus HOM05D003692 ORTHO05D027419 4.9e-09 64.7 58 60.3
THA.LOC104806556 Tarenaya hassleriana HOM05D003692 ORTHO05D004295 1.1e-08 63.5 77 44.2
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 1.3e-06 56.6 111 34.2
Zm00001eb318160 Zea mays HOM05D006123 ORTHO05D007578 1.8e-06 56.2 105 35.2
MCO10G278 Micromonas commoda HOM05D003692 ORTHO05D004295 8.7e-06 53.9 136 30.9


User provided reference genes

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