Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G1120 Papaver somniferum HOM05D002343 ORTHO05D004258 5.5e-68 260.8 125 100.0
PSO541G1548 Papaver somniferum HOM05D002343 ORTHO05D004258 2.0e-62 242.3 124 89.5
PSO675G5936 Papaver somniferum HOM05D002343 ORTHO05D004258 2.0e-62 242.3 124 89.5
PSO675G4376 Papaver somniferum HOM05D002343 ORTHO05D004258 1.8e-58 229.2 122 85.2
TAR626G1712 Trochodendron aralioides HOM05D001622 ORTHO05D002989 2.2e-53 212.2 122 76.2
Lj1A1145T22 Lonicera japonica HOM05D002343 ORTHO05D004258 1.5e-52 209.5 122 73.0
Aa31LG6G2340 Aethionema arabicum HOM05D002343 ORTHO05D004258 1.9e-52 209.1 122 74.6
MSTRG.16345 Avicennia marina HOM05D002343 ORTHO05D004258 1.9e-52 209.1 121 74.4
AT4G19880 Arabidopsis thaliana HOM05D002343 ORTHO05D004258 5.5e-52 207.6 122 73.0
RhsimUnG0242200 Rhododendron simsii HOM05D000046 ORTHO05D004258 5.5e-52 207.6 122 73.0
SGA_v2.0_scaffold175G39364 Striga asiatica HOM05D002343 ORTHO05D004258 9.4e-52 206.8 120 74.2
AL7G34160 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 1.6e-51 206.1 122 73.0
Dinv01672 Davidia involucrata HOM05D002343 ORTHO05D004258 1.6e-51 206.1 122 73.8
Potri.015G121600 Populus trichocarpa HOM05D002343 ORTHO05D004258 1.6e-51 206.1 122 73.0
CSS0015569 Camellia sinensis var. sinensis HOM05D002343 ORTHO05D004258 2.1e-51 205.7 122 72.1
Sabra15G0138000 Salix brachista HOM05D002343 ORTHO05D004258 2.1e-51 205.7 122 73.8
Sed0022561 Sechium edule HOM05D002343 ORTHO05D004258 2.1e-51 205.7 120 76.7
Eucgr.D01044 Eucalyptus grandis HOM05D002343 ORTHO05D004258 2.7e-51 205.3 122 73.8
TWI38G1896 Tripterygium wilfordii HOM05D002343 ORTHO05D004258 2.7e-51 205.3 122 72.1
SalBow6G5040 Salvia bowleyana HOM05D002343 ORTHO05D004258 3.6e-51 204.9 120 71.7
SalBow8G3202 Salvia bowleyana HOM05D002343 ORTHO05D004258 3.6e-51 204.9 120 71.7
PGR083G0976 Punica granatum HOM05D002343 ORTHO05D004258 4.7e-51 204.5 122 73.0
Cfa000713 Carpinus fangiana HOM05D002343 ORTHO05D004258 8.0e-51 203.8 122 73.8
Duzib160G0399 Durio zibethinus HOM05D002343 ORTHO05D004258 8.0e-51 203.8 122 71.3
Thecc.06G142500 Theobroma cacao HOM05D002343 ORTHO05D004258 8.0e-51 203.8 122 72.1
Thecc.06G142700 Theobroma cacao HOM05D002343 ORTHO05D004258 8.0e-51 203.8 122 72.1
MSTRG.7594 Avicennia marina HOM05D002343 ORTHO05D004258 1.0e-50 203.4 120 72.5
C07p50580 Brassica napus HOM05D002343 ORTHO05D004258 1.0e-50 203.4 122 72.1
CARHR226660 Cardamine hirsuta HOM05D002343 ORTHO05D004258 1.0e-50 203.4 122 71.3
Sp7g18370 Schrenkiella parvula HOM05D002343 ORTHO05D004258 1.0e-50 203.4 121 73.6
Carub.0007s2133 Capsella rubella HOM05D002343 ORTHO05D004258 1.4e-50 203.0 122 71.3
Rhsim03G0086200 Rhododendron simsii HOM05D002343 ORTHO05D004258 1.4e-50 203.0 122 71.3
vmacro03518 Vaccinium macrocarpon HOM05D002343 ORTHO05D004258 1.4e-50 203.0 120 73.3
Aqoxy1G01450 Aquilegia oxysepala HOM05D002343 ORTHO05D004258 1.8e-50 202.6 121 71.9
BcaC06g30622 Brassica carinata HOM05D002343 ORTHO05D004258 1.8e-50 202.6 122 72.1
Ca_18764_v3 Cicer arietinum L. HOM05D002343 ORTHO05D004258 1.8e-50 202.6 122 73.8
Gohir.A05G145300 Gossypium hirsutum HOM05D002343 ORTHO05D004258 1.8e-50 202.6 122 71.3
Gorai.009G151800 Gossypium raimondii HOM05D002343 ORTHO05D004258 1.8e-50 202.6 122 72.1
Atru.chr10.496 Acer truncatum HOM05D002343 ORTHO05D004258 2.3e-50 202.2 122 72.1
COL.COLO4_30990 Corchorus olitorius HOM05D002343 ORTHO05D004258 2.3e-50 202.2 122 70.5
Nn7g38152 Nelumbo nucifera HOM05D002343 ORTHO05D004258 3.0e-50 201.8 120 73.3
BcaNung02545 Brassica carinata HOM05D002343 ORTHO05D004258 4.0e-50 201.4 122 71.3
Manes.16G057800 Manihot esculenta HOM05D002343 ORTHO05D004258 4.0e-50 201.4 122 70.5
Prupe.4G111700 Prunus persica HOM05D002343 ORTHO05D004258 4.0e-50 201.4 120 74.2
QL11p016333 Quercus lobata HOM05D002343 ORTHO05D004258 4.0e-50 201.4 122 73.0
A03p52190 Brassica napus HOM05D002343 ORTHO05D004258 5.2e-50 201.1 122 70.5
Migut.M01979 Erythranthe guttata HOM05D002343 ORTHO05D004258 5.2e-50 201.1 120 71.7
Gohir.D05G147765 Gossypium hirsutum HOM05D002343 ORTHO05D004258 5.2e-50 201.1 122 71.3
CiPaw.09G077700 Carya illinoinensis HOM05D002343 ORTHO05D004258 8.8e-50 200.3 122 72.1
ECA232G4481 Erigeron canadensis HOM05D002343 ORTHO05D004258 8.8e-50 200.3 122 69.7
CiPaw.10G064800 Carya illinoinensis HOM05D002343 ORTHO05D004258 1.2e-49 199.9 122 73.0
Ciclev10015774m.g Citrus clementina HOM05D002343 ORTHO05D004258 1.2e-49 199.9 122 69.7
Thhalv10027346m.g Eutrema salsugineum HOM05D002343 ORTHO05D004258 1.2e-49 199.9 120 73.3
Hund22371 Selenicereus undatus HOM05D002343 ORTHO05D004258 1.2e-49 199.9 122 73.8
Thecc.06G142200 Theobroma cacao HOM05D002343 ORTHO05D004258 1.5e-49 199.5 122 70.5
HanXRQChr15g0487361 Helianthus annuus HOM05D002343 ORTHO05D004258 2.0e-49 199.1 122 68.0
MELO3C021757.2 Cucumis melo HOM05D002343 ORTHO05D004258 2.6e-49 198.7 120 72.5
CsaV3_1G046320 Cucumis sativus L. HOM05D002343 ORTHO05D004258 2.6e-49 198.7 120 72.5
MBI10_g36385_MAGBIO Magnolia biondii HOM05D002343 ORTHO05D004258 2.6e-49 198.7 122 72.1
Actinidia33708 Actinidia chinensis HOM05D002343 ORTHO05D004258 3.3e-49 198.4 122 69.7
DCAR_003781 Daucus carota HOM05D002343 ORTHO05D004258 3.3e-49 198.4 122 68.0
GSVIVG01012071001 Vitis vinifera HOM05D002343 ORTHO05D004258 3.3e-49 198.4 122 69.7
ClCG01G009460 Citrullus lanatus HOM05D002343 ORTHO05D004258 4.4e-49 198.0 120 72.5
BolC7t45560H Brassica oleracea HOM05D002343 ORTHO05D004258 5.7e-49 197.6 122 69.7
unitig_32.g10989 Utricularia gibba HOM05D002343 ORTHO05D004258 5.7e-49 197.6 120 70.8
QL06p029638 Quercus lobata HOM05D002343 ORTHO05D004258 7.5e-49 197.2 122 73.0
CARHR177710 Cardamine hirsuta HOM05D002343 ORTHO05D004258 9.7e-49 196.8 122 69.7
MD05G1251900 Malus domestica HOM05D002343 ORTHO05D004258 9.7e-49 196.8 122 71.3
TPR.G20988 Trifolium pratense HOM05D002343 ORTHO05D004258 9.7e-49 196.8 122 71.3
MD10G1233400 Malus domestica HOM05D002343 ORTHO05D004258 1.7e-48 196.1 120 71.7
Medtr4g084040 Medicago truncatula HOM05D002343 ORTHO05D004258 1.7e-48 196.1 122 70.5
AL8G14400 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 2.2e-48 195.7 122 71.3
MD05G1252400 Malus domestica HOM05D002343 ORTHO05D004258 2.2e-48 195.7 122 70.5
Nitab4.5_0013428g0010 Nicotiana tabacum HOM05D002343 ORTHO05D004258 2.2e-48 195.7 120 71.7
AT5G45020 Arabidopsis thaliana HOM05D002343 ORTHO05D004258 2.8e-48 195.3 122 69.7
Cc09_g06140 Coffea canephora HOM05D002343 ORTHO05D004258 3.7e-48 194.9 120 69.2
Cc09_g06130 Coffea canephora HOM05D002343 ORTHO05D004258 4.8e-48 194.5 120 70.8
Thhalv10000959m.g Eutrema salsugineum HOM05D002343 ORTHO05D004258 4.8e-48 194.5 122 69.7
MD10G1233200 Malus domestica HOM05D002343 ORTHO05D004258 4.8e-48 194.5 124 69.4
CAN.G149.51 Capsicum annuum HOM05D002343 ORTHO05D004258 6.3e-48 194.1 120 68.3
CiPaw.09G077500 Carya illinoinensis HOM05D002343 ORTHO05D004258 8.2e-48 193.7 122 67.2
AUR62040764 Chenopodium quinoa HOM05D002343 ORTHO05D004258 1.4e-47 193.0 122 71.3
arahy.Tifrunner.gnm1.ann1.I4Y26E Arachis hypogaea HOM05D002343 ORTHO05D004258 1.8e-47 192.6 122 68.9
arahy.Tifrunner.gnm1.ann1.Q8EGAM Arachis hypogaea HOM05D002343 ORTHO05D004258 1.8e-47 192.6 122 68.9
Lalb_Chr16g0385231 Lupinus albus HOM05D002343 ORTHO05D004258 1.8e-47 192.6 122 68.0
Lsat_1_v5_gn_8_117141 Lactuca sativa HOM05D002343 ORTHO05D004258 2.4e-47 192.2 122 66.4
Peaxi162Scf00149g00610 Petunia axillaris HOM05D002343 ORTHO05D004258 2.4e-47 192.2 120 70.8
Carub.0008s0330 Capsella rubella HOM05D002343 ORTHO05D004258 3.1e-47 191.8 122 68.9
ATR1152G053 Amborella trichopoda HOM05D002343 ORTHO05D004258 4.1e-47 191.4 122 69.7
Sopen02g018000 Solanum pennellii HOM05D002343 ORTHO05D004258 4.1e-47 191.4 120 70.0
RcHm_v2.0_Chr5g0020071 Rosa chinensis HOM05D002343 ORTHO05D004258 5.3e-47 191.0 122 68.0
PGSC0003DMG400010333 Solanum tuberosum HOM05D002343 ORTHO05D004258 7.0e-47 190.7 120 69.2
CANSAT35G1115 Cannabis sativa HOM05D002343 ORTHO05D004258 1.2e-46 189.9 122 66.4
FvH4_3g12250 Fragaria vesca HOM05D002343 ORTHO05D004258 1.2e-46 189.9 122 68.0
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 1.2e-46 189.9 122 68.0
Phvul.002G098300 Phaseolus vulgaris HOM05D002343 ORTHO05D004258 1.6e-46 189.5 122 67.2
Psat7g130560 Pisum sativum HOM05D002343 ORTHO05D004258 1.6e-46 189.5 122 68.9
Solyc02g068900.3 Solanum lycopersicum HOM05D002343 ORTHO05D004258 1.6e-46 189.5 120 70.0
GSVIVG01012072001 Vitis vinifera HOM05D002343 ORTHO05D004258 1.6e-46 189.5 122 67.2
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.7e-46 188.7 121 68.6
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 2.7e-46 188.7 122 67.2
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 3.5e-46 188.3 120 68.3
Sp2g09800 Schrenkiella parvula HOM05D002343 ORTHO05D004258 3.5e-46 188.3 122 68.0
AUR62033029 Chenopodium quinoa HOM05D002343 ORTHO05D004258 4.5e-46 188.0 122 69.7
AUR62040763 Chenopodium quinoa HOM05D002343 ORTHO05D004258 4.5e-46 188.0 120 68.3
CiPaw.09G077600 Carya illinoinensis HOM05D002343 ORTHO05D004258 5.9e-46 187.6 120 65.8
AUR62033030 Chenopodium quinoa HOM05D002343 ORTHO05D004258 5.9e-46 187.6 120 68.3
THA.LOC104811533 Tarenaya hassleriana HOM05D002343 ORTHO05D004258 5.9e-46 187.6 122 64.8
Glyma.07G222400 Glycine max HOM05D002343 ORTHO05D004258 7.7e-46 187.2 122 67.2
Glyma.20G020300 Glycine max HOM05D002343 ORTHO05D004258 1.0e-45 186.8 122 64.8
Nitab4.5_0001288g0060 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.3e-45 186.4 123 67.5
BolC2t10626H Brassica oleracea HOM05D002343 ORTHO05D004258 1.7e-45 186.0 122 65.6
HPP92_027395 Vanilla planifolia HOM05D002343 ORTHO05D004258 1.7e-45 186.0 120 66.7
BcaB07g30484 Brassica carinata HOM05D002343 ORTHO05D004258 2.2e-45 185.7 122 65.6
BcaC03g16717 Brassica carinata HOM05D002343 ORTHO05D004258 2.2e-45 185.7 122 65.6
EL10Ac8g18838 Beta vulgaris HOM05D002343 ORTHO05D004258 2.9e-45 185.3 122 66.4
Sc17g0004430 Simmondsia chinensis HOM05D002343 ORTHO05D004258 5.0e-45 184.5 122 64.8
AL8G14450 Arabidopsis lyrata HOM05D002343 ORTHO05D004258 6.5e-45 184.1 124 67.7
A02p28780 Brassica napus HOM05D002343 ORTHO05D004258 8.5e-45 183.7 122 64.8
BraA02t07910Z Brassica rapa HOM05D002343 ORTHO05D004258 8.5e-45 183.7 122 64.8
Carub.0008s0331 Capsella rubella HOM05D002343 ORTHO05D004258 3.2e-44 181.8 124 65.3
BolC2t10634H Brassica oleracea HOM05D002343 ORTHO05D004258 4.2e-44 181.4 122 63.9
A06p46810 Brassica napus HOM05D002343 ORTHO05D004258 5.5e-44 181.0 116 67.2
Lj4g0013141 Lotus japonicus HOM05D002343 ORTHO05D004258 9.4e-44 180.3 122 66.4
C02p45730 Brassica napus HOM05D002343 ORTHO05D004258 1.6e-43 179.5 122 63.1
CARHR177730 Cardamine hirsuta HOM05D002343 ORTHO05D004258 1.6e-43 179.5 124 63.7
BcaC06g31577 Brassica carinata HOM05D002343 ORTHO05D004258 4.7e-43 177.9 116 66.4
BraA06t27553Z Brassica rapa HOM05D002343 ORTHO05D004258 6.1e-43 177.6 116 65.5
SEGI_31756 Sequoiadendron giganteum HOM05D002343 ORTHO05D004258 1.0e-42 176.8 122 65.6
Eucgr.L02304 Eucalyptus grandis HOM05D002343 ORTHO05D004258 3.0e-42 175.3 122 61.5
Eucgr.E01874 Eucalyptus grandis HOM05D002343 ORTHO05D004258 6.8e-42 174.1 122 61.5
vmacro03517 Vaccinium macrocarpon HOM05D002343 ORTHO05D004258 2.6e-41 172.2 118 65.3
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 9.8e-41 170.2 96 76.0
Zm00001eb363840 Zea mays HOM05D002343 ORTHO05D004258 9.8e-41 170.2 120 62.5
Gohir.D05G147633 Gossypium hirsutum HOM05D002343 ORTHO05D004258 6.3e-40 167.5 122 61.5
Zm00001eb270730 Zea mays HOM05D002343 ORTHO05D004258 1.8e-39 166.0 121 60.3
CDE02G0085 Ceratophyllum demersum HOM05D002343 ORTHO05D004258 9.1e-39 163.7 118 65.3
Zm00001eb048240 Zea mays HOM05D002343 ORTHO05D004258 2.0e-38 162.5 120 60.0
Zm00001eb132230 Zea mays HOM05D002343 ORTHO05D004258 3.5e-38 161.8 121 61.2
MD05G1252100 Malus domestica HOM05D002343 ORTHO05D004258 5.9e-38 161.0 95 73.7
Zm00001eb132220 Zea mays HOM05D002343 ORTHO05D004258 5.9e-38 161.0 121 62.0
SEGI_16350 Sequoiadendron giganteum HOM05D002343 ORTHO05D004258 3.8e-37 158.3 115 64.3
Zm00001eb284930 Zea mays HOM05D002343 ORTHO05D004258 3.8e-37 158.3 121 57.9
Zm00001eb332250 Zea mays HOM05D002343 ORTHO05D002443 3.8e-37 158.3 120 59.2
CAN.G685.2 Capsicum annuum HOM05D002343 ORTHO05D004258 2.5e-36 155.6 100 66.0
Mapoly0016s0180 Marchantia polymorpha HOM05D002343 ORTHO05D004258 5.5e-36 154.5 123 53.7
SMO358G0526 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 9.5e-36 153.7 117 55.6
SMO358G0163 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 1.2e-35 153.3 117 55.6
SMO358G0446 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 1.2e-35 153.3 117 55.6
Pp3c14_3240 Physcomitrium patens HOM05D002343 ORTHO05D004258 1.6e-35 152.9 118 57.6
CBR_g19102 Chara braunii HOM05D002343 ORTHO05D004258 1.2e-33 146.7 119 53.8
AagrBONN_evm.TU.Sc2ySwM_368.765 Anthoceros agrestis HOM05D002343 ORTHO05D004258 5.7e-33 144.4 117 53.0
SMO358G0501 Selaginella moellendorffii HOM05D002343 ORTHO05D004258 3.7e-32 141.7 97 59.8
BcaC06g34494 Brassica carinata HOM05D002343 ORTHO05D004258 1.1e-31 140.2 116 56.0
A03p52200 Brassica napus HOM05D002343 ORTHO05D004258 1.7e-29 132.9 78 73.1
Eucgr.E01814 Eucalyptus grandis HOM05D002343 ORTHO05D004258 2.3e-29 132.5 98 61.2
BraA03t14291Z Brassica rapa HOM05D002343 ORTHO05D004258 3.8e-29 131.7 78 71.8
BolC7t43319H Brassica oleracea HOM05D002343 ORTHO05D004258 4.0e-26 121.7 81 61.7
Zm00001eb202530 Zea mays HOM05D002343 ORTHO05D004258 4.1e-23 111.7 79 59.5
Rhsim12G0131300 Rhododendron simsii HOM05D000046 ORTHO05D004258 1.3e-21 106.7 62 72.6
Cre12.g538100 Chlamydomonas reinhardtii HOM05D002343 ORTHO05D004258 2.3e-21 105.9 135 43.0
Cpa.g.sc135.12 Carica papaya HOM05D002343 ORTHO05D004258 4.3e-20 101.7 62 71.0
Cfa027191 Carpinus fangiana HOM05D002343 ORTHO05D004258 5.2e-18 94.7 125 40.8
Ca_29218_v3 Cicer arietinum L. HOM05D002343 ORTHO05D004258 4.4e-17 91.7 117 41.0
MCO15G436 Micromonas commoda HOM05D002343 ORTHO05D004258 7.5e-17 90.9 138 39.1
PRCOL_00005140 Prasinoderma coloniale HOM05D002343 ORTHO05D004258 4.9e-16 88.2 131 38.2
Cre03.g154950 Chlamydomonas reinhardtii HOM05D002343 ORTHO05D004258 1.4e-15 86.7 119 41.2
Ciclev10017875m.g Citrus clementina HOM05D002343 ORTHO05D004258 9.5e-12 73.9 47 66.0
AT5G44990 Arabidopsis thaliana HOM05D002343 ORTHO05D004258 1.6e-11 73.2 45 66.7
CBR_g8646 Chara braunii HOM05D002343 ORTHO05D017317 2.1e-11 72.8 60 48.3
unitig_85.g27266 Utricularia gibba HOM05D002343 ORTHO05D009170 1.2e-09 67.0 119 34.5
C02p45630 Brassica napus HOM05D002343 ORTHO05D004258 1.3e-08 63.5 41 65.9
Glyma.10G040000 Glycine max HOM05D002343 ORTHO05D009170 1.7e-08 63.2 120 34.2
CAN.G771.38 Capsicum annuum HOM05D002343 ORTHO05D009170 2.9e-08 62.4 120 33.3
Ca_09652_v3 Cicer arietinum L. HOM05D002343 ORTHO05D009170 3.7e-08 62.0 124 34.7
Actinidia30133 Actinidia chinensis HOM05D002343 ORTHO05D009170 6.4e-08 61.2 120 35.0
ATR0736G191 Amborella trichopoda HOM05D002343 ORTHO05D009170 1.1e-07 60.5 127 30.7
Phvul.007G189800 Phaseolus vulgaris HOM05D002343 ORTHO05D009170 2.4e-07 59.3 120 32.5
Duzib211G0473 Durio zibethinus HOM05D002343 ORTHO05D009170 4.1e-07 58.5 122 32.8
Mapoly0185s0008 Marchantia polymorpha HOM05D002343 ORTHO05D009170 4.1e-07 58.5 123 29.3
VMungo0720G1606 Vigna mungo HOM05D002343 ORTHO05D009170 4.1e-07 58.5 120 31.7
CDE02G2921 Ceratophyllum demersum HOM05D002343 ORTHO05D009170 5.4e-07 58.2 118 30.5
Lj5g0027430 Lotus japonicus HOM05D002343 ORTHO05D009170 5.4e-07 58.2 124 29.8
Dinv05967 Davidia involucrata HOM05D002343 ORTHO05D004258 2.1e-06 56.2 32 75.0
Lsat_1_v5_gn_5_181360 Lactuca sativa HOM05D002343 ORTHO05D009170 2.7e-06 55.8 123 28.5
SMO117G0277 Selaginella moellendorffii HOM05D002343 ORTHO05D009170 4.6e-06 55.1 117 33.3


User provided reference genes

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