Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 2.4e-167 592.0 285 100.0
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 6.5e-165 583.9 285 97.9
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 2.3e-162 575.5 287 97.6
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 4.3e-161 571.2 285 97.5
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 7.2e-140 500.7 271 85.6
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 7.2e-140 500.7 271 85.6
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 9.4e-140 500.4 284 81.3
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 1.2e-139 500.0 272 86.0
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 3.6e-139 498.4 276 83.3
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 4.7e-139 498.0 276 84.1
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 8.0e-139 497.3 286 82.2
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 1.0e-138 496.9 284 83.1
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.4e-138 496.5 285 82.1
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 5.2e-138 494.6 284 80.3
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 1.5e-137 493.0 275 85.8
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 3.3e-137 491.9 275 81.8
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 4.4e-137 491.5 272 85.7
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 4.4e-137 491.5 289 80.6
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 5.7e-137 491.1 284 82.0
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 5.7e-137 491.1 289 80.6
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 9.7e-137 490.3 271 83.8
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 1.3e-136 490.0 276 83.3
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 2.8e-136 488.8 272 82.0
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 3.7e-136 488.4 275 83.6
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 4.8e-136 488.0 275 82.9
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 6.3e-136 487.6 271 86.0
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 8.2e-136 487.3 283 82.3
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 1.4e-135 486.5 282 81.6
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 1.4e-135 486.5 272 83.8
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 1.8e-135 486.1 281 81.9
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.8e-135 486.1 282 80.1
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 2.4e-135 485.7 284 79.9
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 2.4e-135 485.7 284 80.3
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 3.1e-135 485.3 283 82.0
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 3.1e-135 485.3 283 82.0
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 1.2e-134 483.4 274 82.5
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 2.0e-134 482.6 279 81.0
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.5e-134 481.9 277 81.9
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 4.5e-134 481.5 283 79.2
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 5.9e-134 481.1 276 80.1
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 1.0e-133 480.3 275 81.8
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 2.2e-133 479.2 275 80.0
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 2.2e-133 479.2 271 83.0
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 3.8e-133 478.4 272 82.4
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 3.8e-133 478.4 279 79.6
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 5.0e-133 478.0 276 79.7
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 5.0e-133 478.0 275 80.0
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 1.1e-132 476.9 271 82.3
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 1.1e-132 476.9 271 81.9
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 1.5e-132 476.5 282 78.4
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 1.5e-132 476.5 271 81.9
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 1.9e-132 476.1 307 76.2
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 1.9e-132 476.1 310 75.5
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 2.5e-132 475.7 286 78.3
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 4.2e-132 474.9 287 78.0
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 5.5e-132 474.6 267 83.1
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.2e-131 473.4 279 79.2
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.6e-131 473.0 271 81.2
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 3.0e-130 468.8 271 80.8
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 4.0e-130 468.4 272 80.9
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 6.7e-130 467.6 275 79.6
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 2.6e-129 465.7 300 75.7
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 2.6e-129 465.7 272 80.9
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 4.4e-129 464.9 273 80.6
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 5.7e-129 464.5 276 75.7
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 7.5e-129 464.2 253 85.4
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 9.7e-129 463.8 272 80.1
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 9.7e-129 463.8 272 81.2
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 1.3e-128 463.4 281 76.2
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 2.2e-128 462.6 279 78.9
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 2.8e-128 462.2 283 77.4
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 2.8e-128 462.2 275 76.4
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 3.7e-128 461.8 278 78.8
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 6.3e-128 461.1 284 75.7
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 6.3e-128 461.1 274 79.9
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 6.3e-128 461.1 275 76.0
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 8.2e-128 460.7 284 77.1
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.1e-127 460.3 279 76.0
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.1e-127 460.3 279 76.0
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 1.4e-127 459.9 304 74.7
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 3.1e-127 458.8 325 69.8
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 3.1e-127 458.8 275 75.6
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 7.0e-127 457.6 271 79.7
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 3.5e-126 455.3 270 76.7
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 4.5e-126 454.9 273 78.0
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 4.5e-126 454.9 273 78.0
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.7e-125 453.0 272 76.1
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 1.7e-125 453.0 270 80.4
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 3.8e-125 451.8 271 77.9
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 1.5e-124 449.9 283 73.5
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 1.9e-124 449.5 279 77.8
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 5.5e-124 448.0 324 67.6
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 7.2e-124 447.6 271 76.4
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 9.4e-124 447.2 272 75.4
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 2.1e-123 446.0 271 76.0
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.4e-122 443.4 281 74.4
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 7.5e-121 437.6 282 72.3
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 7.7e-118 427.6 312 67.6
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 1.3e-117 426.8 275 75.3
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 1.7e-117 426.4 282 69.9
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 2.9e-117 425.6 268 73.5
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 5.0e-117 424.9 274 75.5
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 1.1e-116 423.7 275 72.4
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 8.0e-115 417.5 271 71.6
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 1.5e-113 413.3 359 59.6
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 8.3e-112 407.5 234 82.1
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.3e-109 399.4 238 78.6
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 6.1e-107 391.3 270 69.6
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 8.0e-107 391.0 227 82.4
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.3e-104 383.6 218 83.9
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 3.2e-103 379.0 289 65.7
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.7e-101 373.2 199 87.4
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 3.6e-99 365.5 210 81.0
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.4e-95 353.6 192 83.9
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 1.7e-93 346.7 273 57.5
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 2.8e-91 339.3 283 57.6
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 6.2e-91 338.2 228 73.2
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 5.2e-90 335.1 272 59.6
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 2.3e-85 319.7 189 77.8
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 2.3e-85 319.7 189 77.8
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.3e-80 303.9 226 66.8
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 4.3e-76 288.9 226 60.6
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 2.6e-73 279.6 256 52.3
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 1.3e-69 267.3 156 82.7
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 1.1e-66 257.7 293 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 2.0e-65 253.4 195 60.5
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 3.0e-61 239.6 151 72.2
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 3.1e-58 229.6 199 51.8
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 7.6e-57 224.9 131 77.9
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.2e-55 219.5 266 44.7
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 1.8e-45 187.2 191 50.8
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 6.5e-40 168.7 107 73.8
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 2.0e-36 157.1 283 37.1
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 7.4e-36 155.2 211 39.8
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 2.1e-30 137.1 84 73.8
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 4.4e-28 129.4 102 61.8
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 8.5e-16 88.6 84 54.8
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 7.2e-15 85.5 51 74.5
arahy.Tifrunner.gnm1.ann1.W1BQBA Arachis hypogaea HOM05D005613 ORTHO05D006903 8.3e-11 72.0 45 73.3


User provided reference genes

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