Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 2.1e-54 215.3 101 100.0
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 2.8e-38 161.8 101 74.3
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.1e-37 159.8 98 72.4
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 1.4e-37 159.5 103 71.8
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 5.9e-36 154.1 102 69.6
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.0e-35 153.3 101 72.3
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.0e-35 153.3 100 73.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 5.0e-35 151.0 99 70.7
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 8.4e-35 150.2 101 71.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 8.4e-35 150.2 99 70.7
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.1e-34 149.8 99 69.7
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.1e-34 149.8 95 71.6
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.9e-34 149.1 101 71.3
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.9e-34 149.1 105 71.4
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.5e-34 148.7 100 71.0
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 2.5e-34 148.7 100 70.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.2e-34 148.3 96 70.8
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 4.2e-34 147.9 99 70.7
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 4.2e-34 147.9 101 68.3
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 4.2e-34 147.9 101 69.3
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.2e-34 147.1 101 69.3
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 9.3e-34 146.7 99 66.7
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.2e-33 146.4 99 69.7
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.2e-33 146.4 105 67.6
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.6e-33 146.0 105 70.5
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.7e-33 145.2 101 68.3
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.7e-33 145.2 101 68.3
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.7e-33 145.2 99 66.7
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.1e-33 144.1 101 68.3
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 7.9e-33 143.7 99 67.7
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.9e-33 143.7 99 65.7
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.0e-32 143.3 98 69.4
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 1.0e-32 143.3 100 69.0
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 1.0e-32 143.3 96 69.8
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.0e-32 143.3 101 67.3
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.3e-32 142.9 99 66.7
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.3e-32 142.9 101 69.3
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.3e-32 142.9 99 71.7
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.8e-32 142.5 101 69.3
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 2.3e-32 142.1 100 68.0
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 3.0e-32 141.7 100 68.0
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.0e-32 141.7 99 67.7
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 3.0e-32 141.7 98 66.3
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.9e-32 141.4 99 65.7
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 5.1e-32 141.0 104 66.3
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 6.7e-32 140.6 100 68.0
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 6.7e-32 140.6 99 65.7
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.1e-31 139.8 102 63.7
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.1e-31 139.8 99 65.7
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.5e-31 139.4 100 66.0
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 1.9e-31 139.0 97 69.1
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 1.9e-31 139.0 101 67.3
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.9e-31 139.0 98 62.2
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 4.3e-31 137.9 99 66.7
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 4.3e-31 137.9 99 66.7
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 4.3e-31 137.9 105 70.5
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 5.7e-31 137.5 99 68.7
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 7.4e-31 137.1 101 67.3
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 9.7e-31 136.7 102 65.7
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 9.7e-31 136.7 98 67.3
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.3e-30 136.3 97 66.0
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.3e-30 136.3 97 66.0
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 1.6e-30 136.0 103 64.1
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.2e-30 135.6 99 63.6
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.8e-30 135.2 100 64.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 2.8e-30 135.2 99 66.7
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 4.8e-30 134.4 98 62.2
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 6.3e-30 134.0 102 67.6
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 8.2e-30 133.7 101 65.3
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 8.2e-30 133.7 102 64.7
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 8.2e-30 133.7 98 63.3
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 8.2e-30 133.7 99 65.7
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 8.2e-30 133.7 105 65.7
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.1e-29 133.3 102 64.7
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.1e-29 133.3 88 70.5
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.8e-29 132.5 101 63.4
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.8e-29 132.5 101 63.4
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.8e-29 132.5 99 63.6
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 2.4e-29 132.1 98 62.2
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 4.1e-29 131.3 99 64.6
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 5.3e-29 131.0 89 68.5
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 5.3e-29 131.0 101 61.4
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 9.0e-29 130.2 87 66.7
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 9.0e-29 130.2 101 61.4
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.2e-28 129.8 128 54.7
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.5e-28 129.4 99 63.6
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.4e-28 128.3 101 59.4
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 5.9e-28 127.5 99 62.6
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 7.7e-28 127.1 102 61.8
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 7.7e-28 127.1 102 63.7
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 7.7e-28 127.1 97 61.9
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 7.7e-28 127.1 97 61.9
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 7.7e-28 127.1 97 60.8
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.0e-27 126.7 99 63.6
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.3e-27 126.3 97 60.8
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 1.3e-27 126.3 89 70.8
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.3e-27 126.3 98 59.2
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.7e-27 125.9 99 58.6
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 6.5e-27 124.0 100 58.0
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 6.5e-27 124.0 100 58.0
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 6.5e-27 124.0 101 58.4
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 6.5e-27 124.0 99 58.6
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 8.5e-27 123.6 98 61.2
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 2.5e-26 122.1 102 61.8
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.2e-26 120.6 88 63.6
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 7.2e-26 120.6 108 54.6
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 9.4e-26 120.2 101 59.4
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 9.4e-26 120.2 89 64.0
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.2e-25 119.8 98 59.2
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 1.6e-25 119.4 99 59.6
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 2.1e-25 119.0 100 61.0
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 2.1e-25 119.0 100 61.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.7e-25 118.6 90 64.4
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 4.6e-25 117.9 88 61.4
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.8e-24 115.9 100 59.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 1.8e-24 115.9 90 62.2
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.0e-24 115.2 73 67.1
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 3.0e-24 115.2 90 62.2
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 5.1e-24 114.4 88 61.4
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.0e-23 112.5 91 62.6
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 5.7e-23 110.9 86 60.5
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 7.4e-23 110.5 84 60.7
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 1.3e-22 109.8 90 61.1
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 6.3e-22 107.5 99 55.6
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.8e-21 105.9 90 58.9
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 3.1e-21 105.1 77 59.7
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.1e-21 104.8 88 60.2
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.4e-20 101.7 90 57.8
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.2e-17 93.2 99 45.5
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 1.8e-16 89.4 74 63.5
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.0e-16 88.6 50 74.0
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 6.7e-16 87.4 73 61.6
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.7e-16 87.4 74 58.1
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 1.5e-15 86.3 74 62.2
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 9.7e-15 83.6 94 47.9
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.3e-14 83.2 74 56.8
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.8e-14 82.0 86 55.8
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.7e-14 81.6 73 58.9
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 4.8e-14 81.3 103 45.6
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 4.1e-13 78.2 76 55.3
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.0e-12 75.9 109 44.0
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.0e-11 73.6 90 47.8
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.3e-11 73.2 61 52.5
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 6.5e-11 70.9 82 43.9
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 2.5e-10 68.9 93 38.7
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 9.4e-10 67.0 78 41.0
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 4.0e-08 61.6 53 49.1
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.5e-07 59.7 35 71.4
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 5.7e-07 57.8 51 54.9
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 5.7e-07 57.8 51 54.9
MCO08G099 Micromonas commoda HOM05D004858 ORTHO05D005600 2.2e-06 55.8 74 39.2
TAR048G0001 Trochodendron aralioides HOM05D032931 ORTHO05D005600 8.2e-06 53.9 37 73.0
TAR636G2680 Trochodendron aralioides HOM05D032931 ORTHO05D005600 8.2e-06 53.9 37 73.0


User provided reference genes

Program Settings