Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.9e-147 525.8 261 100.0
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.2e-144 516.5 261 98.1
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 3.9e-132 474.9 261 90.0
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 2.3e-92 342.8 256 67.6
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 3.9e-92 342.0 257 65.8
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 5.1e-92 341.7 256 65.2
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 8.7e-92 340.9 233 69.1
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 1.9e-91 339.7 259 65.3
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 1.3e-90 337.0 259 65.3
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 1.6e-90 336.7 257 65.0
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 2.1e-90 336.3 259 64.9
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 8.2e-90 334.3 249 67.5
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 8.2e-90 334.3 260 65.8
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.8e-89 333.2 258 64.7
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 5.3e-89 331.6 247 66.4
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 5.3e-89 331.6 256 66.4
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 1.2e-88 330.5 258 64.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.2e-88 330.5 249 65.1
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 2.0e-88 329.7 256 63.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 2.6e-88 329.3 201 75.1
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 4.5e-88 328.6 215 70.2
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 4.5e-88 328.6 215 70.2
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 4.5e-88 328.6 256 64.8
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 7.6e-88 327.8 256 64.5
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.0e-87 327.4 256 64.5
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.0e-87 327.4 218 71.6
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.3e-87 327.0 257 62.6
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.9e-87 325.9 209 72.7
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 3.8e-87 325.5 247 63.6
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.0e-87 325.1 245 66.1
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 5.0e-87 325.1 243 66.7
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 5.0e-87 325.1 257 64.2
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 6.5e-87 324.7 249 65.1
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.5e-87 324.7 249 64.7
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.5e-87 324.7 249 65.1
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.1e-86 323.9 247 66.0
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.1e-86 323.9 233 67.4
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 1.9e-86 323.2 257 62.3
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 4.2e-86 322.0 249 63.9
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.2e-86 322.0 249 63.9
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.2e-86 322.0 249 63.9
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.2e-86 322.0 234 67.1
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.5e-86 321.6 248 64.5
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 5.5e-86 321.6 257 64.6
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 7.2e-86 321.2 256 62.5
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 7.2e-86 321.2 246 63.4
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 7.2e-86 321.2 246 63.4
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 9.3e-86 320.9 246 63.0
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 9.3e-86 320.9 257 61.5
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.2e-85 320.5 248 62.9
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.6e-85 320.1 257 61.9
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.6e-85 320.1 257 63.8
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.6e-85 320.1 253 62.8
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.6e-85 320.1 249 61.8
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 2.1e-85 319.7 251 61.0
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.1e-85 319.7 257 61.9
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.7e-85 319.3 210 69.0
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 3.5e-85 318.9 248 62.5
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.5e-85 318.9 247 62.3
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 3.5e-85 318.9 251 61.4
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 3.5e-85 318.9 257 61.5
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.6e-85 318.5 201 72.6
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 4.6e-85 318.5 201 73.1
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 4.6e-85 318.5 258 62.0
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 6.1e-85 318.2 244 62.3
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.0e-84 317.4 263 62.4
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 2.3e-84 316.2 248 60.9
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 3.9e-84 315.5 236 64.4
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 6.7e-84 314.7 251 61.8
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.1e-83 313.9 262 58.4
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.5e-83 313.5 218 67.9
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.9e-83 313.2 249 60.6
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 2.5e-83 312.8 210 68.6
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 2.5e-83 312.8 199 74.4
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 3.3e-83 312.4 225 65.8
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 4.3e-83 312.0 231 62.8
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 4.3e-83 312.0 222 66.2
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 7.4e-83 311.2 201 70.1
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 9.7e-83 310.8 201 69.2
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 9.7e-83 310.8 201 69.2
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 9.7e-83 310.8 244 63.5
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 9.7e-83 310.8 225 65.3
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.3e-82 310.5 268 58.2
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.6e-82 310.1 193 73.1
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 3.7e-82 308.9 199 72.9
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 4.8e-82 308.5 235 63.8
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 4.8e-82 308.5 262 60.3
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 6.3e-82 308.1 257 60.3
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 6.3e-82 308.1 256 60.9
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.1e-81 307.4 251 59.4
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.1e-81 307.4 199 72.4
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 1.1e-81 307.4 254 61.0
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 4.1e-81 305.4 247 60.3
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 4.1e-81 305.4 245 59.6
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 6.9e-81 304.7 247 60.7
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.5e-80 303.5 201 68.2
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 2.6e-80 302.8 205 70.2
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 7.7e-80 301.2 223 63.7
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 2.9e-79 299.3 230 64.8
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 7.2e-78 294.7 296 53.0
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 9.7e-75 284.3 170 72.9
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 3.7e-74 282.3 257 54.5
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 3.8e-71 272.3 256 58.2
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 5.0e-71 271.9 203 62.6
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 6.5e-71 271.6 234 59.4
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.2e-70 269.2 355 43.4
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 1.2e-64 250.8 146 76.0
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.0e-64 250.0 176 67.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.0e-63 247.7 330 46.1
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 1.1e-59 234.2 135 76.3
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.7e-59 231.9 287 47.7
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 4.8e-58 228.8 220 53.6
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 5.5e-54 215.3 256 44.1
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 5.5e-54 215.3 148 65.5
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.6e-53 213.8 186 52.7
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 3.6e-53 212.6 199 55.8
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.4e-52 210.7 196 52.0
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 9.1e-49 198.0 117 76.1
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 8.5e-47 191.4 154 57.8
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.1e-46 191.0 184 46.7
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 8.8e-44 181.4 169 52.7
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 2.0e-43 180.3 104 77.9
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.2e-40 171.0 98 81.6
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.7e-39 167.2 98 77.6
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 3.3e-38 162.9 194 43.8
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 3.3e-38 162.9 98 73.5
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.5e-35 154.1 94 74.5
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.2e-34 150.2 94 69.1
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 6.4e-34 148.7 139 53.2
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.1e-33 147.9 139 51.1
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.4e-33 146.7 85 81.2
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 4.1e-33 146.0 157 52.2
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 4.9e-26 122.5 101 54.5
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.6e-24 117.5 209 34.0
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.0e-24 117.1 181 39.2
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 3.0e-23 113.2 89 59.6
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 3.0e-23 113.2 89 59.6
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 5.0e-23 112.5 69 72.5
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 5.0e-23 112.5 92 59.8
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 6.6e-23 112.1 89 60.7
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 8.6e-23 111.7 88 61.4
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 2.8e-21 106.7 110 51.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 5.8e-19 99.0 100 50.0
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 2.4e-17 93.6 181 31.5
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 1.9e-14 84.0 49 77.6
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 4.7e-13 79.3 117 29.1
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 4.0e-12 76.3 111 43.2
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.6e-11 73.6 44 72.7
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.6e-11 73.6 44 72.7
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 8.4e-10 68.6 42 76.2
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 3.2e-09 66.6 85 49.4
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 7.8e-08 62.0 55 54.5
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 1.3e-07 61.2 55 49.1
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 1.7e-07 60.8 41 65.9
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 2.3e-07 60.5 121 33.1
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 2.3e-07 60.5 47 59.6
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.0e-07 60.1 42 64.3
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 8.6e-07 58.5 40 65.0
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 4.3e-06 56.2 104 39.4
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 7.3e-06 55.5 38 65.8


User provided reference genes

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