Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 2.1e-208 728.8 365 100.0
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 8.5e-202 706.8 365 96.4
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 5.5e-201 704.1 365 95.9
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 6.8e-167 590.9 366 78.4
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.9e-161 572.8 363 76.9
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 4.2e-161 571.6 363 77.1
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 9.5e-161 570.5 365 76.4
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.4e-159 566.6 365 77.0
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 1.4e-159 566.6 359 75.5
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.4e-159 566.6 365 77.5
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.3e-159 565.8 363 76.0
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.0e-159 565.5 363 75.8
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 4.0e-159 565.1 365 74.8
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 5.2e-159 564.7 365 75.3
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 8.9e-159 563.9 364 74.5
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.3e-157 560.1 363 75.8
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 3.7e-157 558.5 363 74.7
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 4.9e-157 558.1 366 73.8
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 4.9e-157 558.1 375 73.9
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 8.3e-157 557.4 418 67.2
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.4e-156 555.8 363 74.7
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 3.2e-156 555.4 365 75.1
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 5.4e-156 554.7 363 75.5
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 9.2e-156 553.9 363 74.1
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.6e-155 553.1 363 74.1
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 3.5e-155 552.0 365 74.8
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 4.5e-155 551.6 363 73.8
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 5.9e-155 551.2 363 73.8
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 8.6e-154 547.4 363 73.0
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-153 547.0 365 73.7
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.5e-153 546.6 390 71.0
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-153 546.2 365 73.7
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 1.8e-151 539.7 363 72.5
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.5e-150 536.6 371 70.4
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-150 536.2 365 72.3
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 5.8e-150 534.6 363 70.2
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.5e-150 534.3 363 71.6
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 9.8e-150 533.9 363 71.6
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 9.8e-150 533.9 363 70.2
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 9.8e-150 533.9 363 70.0
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.7e-149 533.1 363 73.6
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.2e-149 532.7 363 71.9
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 3.7e-149 531.9 371 70.1
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 4.9e-149 531.6 367 72.8
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 7.0e-148 527.7 375 69.1
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 6.0e-147 524.6 362 70.4
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 7.8e-147 524.2 365 72.1
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 7.8e-147 524.2 356 72.2
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.0e-146 523.9 365 70.7
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.0e-146 523.9 364 71.7
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.3e-146 523.5 360 71.9
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.7e-146 523.1 368 69.6
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 6.6e-146 521.2 371 69.3
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.9e-145 519.6 319 77.1
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 3.3e-145 518.8 359 71.9
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.2e-144 516.9 363 71.1
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.6e-144 515.4 391 65.7
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.4e-143 513.5 362 69.1
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.3e-143 512.7 354 70.9
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 4.0e-143 511.9 362 68.8
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 4.0e-143 511.9 362 69.3
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 5.2e-143 511.5 365 68.8
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 6.8e-143 511.1 362 68.8
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 8.9e-143 510.8 362 69.1
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.2e-142 510.4 362 69.1
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.5e-142 510.0 363 68.6
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 2.6e-142 509.2 366 68.9
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 5.8e-142 508.1 355 71.0
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 5.8e-142 508.1 355 71.0
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 7.5e-142 507.7 368 68.8
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 9.8e-142 507.3 361 67.9
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 3.7e-141 505.4 359 68.0
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.7e-141 505.4 383 66.6
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.1e-140 503.8 362 68.2
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.4e-140 503.4 368 68.8
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.9e-140 503.1 362 68.0
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.2e-140 502.3 362 68.5
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-139 500.4 388 64.7
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.7e-139 499.2 365 67.9
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.0e-139 498.0 388 64.4
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.0e-138 497.3 388 64.4
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.5e-137 493.4 362 67.4
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 2.5e-137 492.7 352 69.0
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 4.3e-137 491.9 399 63.9
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 3.1e-135 485.7 352 67.9
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 3.1e-135 485.7 352 68.5
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 4.0e-135 485.3 320 75.3
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.4e-134 482.3 363 67.5
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 9.9e-134 480.7 362 65.7
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.3e-133 480.3 363 66.4
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.4e-132 476.9 293 78.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 1.2e-131 473.8 326 69.9
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.6e-131 473.4 354 65.0
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 7.8e-131 471.1 363 63.4
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.7e-130 469.9 375 64.8
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 1.9e-129 466.5 322 72.4
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.3e-129 465.7 362 63.3
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 9.6e-129 464.2 363 65.0
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 3.6e-128 462.2 359 64.1
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 3.6e-128 462.2 359 64.1
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.6e-126 456.1 363 63.4
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.6e-126 456.1 372 63.7
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.1e-124 450.7 354 63.8
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 5.1e-122 441.8 300 73.7
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 4.3e-121 438.7 303 73.3
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 1.2e-118 430.6 300 70.3
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.2e-118 430.6 292 70.9
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.3e-117 427.2 330 63.6
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.3e-113 412.5 388 57.7
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.0e-110 403.3 286 66.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-105 387.5 289 67.1
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.9e-105 386.7 363 57.3
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 4.8e-104 382.1 359 53.5
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.5e-102 377.1 363 55.6
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 2.0e-102 376.7 348 54.0
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.9e-101 372.1 363 56.2
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 7.4e-97 358.2 314 54.5
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.3e-96 357.5 366 53.8
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.1e-96 356.7 337 52.2
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 4.1e-95 352.4 356 54.8
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 2.2e-93 346.7 332 51.2
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.9e-92 343.6 365 52.6
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.9e-89 333.6 264 65.5
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 3.7e-64 249.6 154 75.3
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.2e-59 234.6 328 39.3
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.3e-56 222.2 137 75.2
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 2.4e-47 193.7 376 33.0
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.5e-41 174.5 135 65.2
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 2.1e-35 154.1 341 32.8
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.8e-34 151.0 109 73.4
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-34 149.8 140 55.0
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 5.2e-34 149.4 109 73.4
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.0e-33 147.5 199 43.7
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 6.0e-30 136.0 105 67.6
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.9e-28 131.0 135 51.1
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-27 127.1 87 69.0
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 8.1e-27 125.6 118 60.2
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.1e-27 125.6 87 67.8
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.0e-26 123.2 84 75.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.8e-26 122.5 89 73.0
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 9.8e-25 118.6 90 64.4
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 6.4e-24 115.9 345 25.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-20 104.8 81 70.4
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.6e-20 102.8 83 66.3
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.6e-20 102.8 81 69.1
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.3e-20 102.4 80 70.0
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.3e-20 102.4 80 70.0
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.6e-19 101.3 80 70.0
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-19 100.5 80 68.8
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-19 100.1 81 66.7
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.2e-19 99.4 71 71.8
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.1e-19 99.0 80 68.8
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-18 97.8 103 57.3
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-18 97.8 81 65.4
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 3.1e-18 97.1 105 54.3
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 5.4e-15 86.3 74 60.8
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 8.6e-13 79.0 63 66.7
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.9e-12 77.8 45 77.8
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 5.6e-12 76.3 70 65.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-11 73.9 51 76.5
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.1e-10 70.5 89 44.9
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 5.4e-07 59.7 54 59.3
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-06 58.2 94 44.7


User provided reference genes

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