Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.1e-146 523.5 294 100.0
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 7.7e-137 490.7 253 96.4
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 2.6e-92 342.8 255 69.0
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.1e-90 337.4 251 69.3
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 2.7e-89 332.8 260 66.9
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 3.5e-89 332.4 254 66.9
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.7e-88 330.1 247 68.4
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 1.7e-88 330.1 247 68.4
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 5.6e-87 325.1 247 66.4
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 7.3e-87 324.7 250 68.4
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.1e-86 323.2 254 66.9
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 2.1e-86 323.2 250 66.8
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 6.2e-86 321.6 250 66.4
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.8e-85 320.1 258 62.8
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.0e-85 318.9 250 64.4
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 5.2e-85 318.5 249 65.9
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 8.9e-85 317.8 273 63.0
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.2e-84 317.4 258 64.3
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 1.5e-84 317.0 248 64.9
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.0e-84 316.6 250 63.6
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 2.0e-84 316.6 256 64.1
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 2.0e-84 316.6 185 80.5
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 3.4e-84 315.8 258 65.9
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 4.4e-84 315.5 254 63.8
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 5.8e-84 315.1 249 63.9
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 7.5e-84 314.7 273 62.3
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 9.8e-84 314.3 251 64.5
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.3e-83 313.9 249 65.1
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 1.7e-83 313.5 246 65.0
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 2.9e-83 312.8 253 63.2
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 2.9e-83 312.8 256 64.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.7e-83 312.4 253 63.6
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 6.4e-83 311.6 250 65.6
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 8.3e-83 311.2 258 65.1
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.4e-82 310.5 249 66.3
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 2.4e-82 309.7 252 62.7
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 2.4e-82 309.7 285 58.2
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 3.2e-82 309.3 251 63.3
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 3.2e-82 309.3 243 64.6
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 4.1e-82 308.9 246 63.0
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 4.1e-82 308.9 250 60.8
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 5.4e-82 308.5 250 63.2
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 5.4e-82 308.5 249 65.1
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 9.2e-82 307.8 250 62.0
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 9.2e-82 307.8 251 62.5
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.2e-81 307.4 245 63.7
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.1e-81 306.6 255 62.7
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 2.1e-81 306.6 250 61.6
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.7e-81 306.2 249 65.1
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 2.7e-81 306.2 249 64.7
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.7e-81 306.2 254 65.4
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 3.5e-81 305.8 251 60.6
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 4.6e-81 305.4 249 62.7
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.0e-80 304.3 246 63.0
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 1.3e-80 303.9 225 65.8
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.3e-80 303.9 239 64.4
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 2.3e-80 303.1 258 63.6
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 3.0e-80 302.8 251 63.3
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 3.0e-80 302.8 252 61.5
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 3.9e-80 302.4 248 61.3
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 3.9e-80 302.4 260 62.7
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.9e-80 302.4 256 62.1
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 5.1e-80 302.0 249 61.0
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 1.1e-79 300.8 240 65.0
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.5e-79 300.4 247 61.1
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.5e-79 299.7 216 69.0
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 3.3e-79 299.3 185 75.1
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 4.3e-79 298.9 249 62.2
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 1.6e-78 297.0 256 60.2
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.8e-78 296.2 250 62.4
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.8e-78 296.2 273 56.8
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 6.2e-78 295.0 272 56.2
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 5.2e-77 292.0 207 67.1
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 5.2e-77 292.0 256 57.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 6.8e-77 291.6 250 61.2
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 3.4e-76 289.3 181 73.5
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 5.8e-76 288.5 250 58.0
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 1.7e-75 287.0 247 58.3
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 2.2e-75 286.6 181 72.9
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 2.2e-75 286.6 208 64.9
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 6.4e-75 285.0 243 58.8
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 6.4e-75 285.0 179 72.6
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 6.4e-75 285.0 252 57.5
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 6.4e-75 285.0 249 57.4
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 8.4e-75 284.6 179 70.9
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.4e-74 283.9 179 72.6
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 1.4e-74 283.9 249 57.0
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 1.9e-74 283.5 183 70.5
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 4.1e-74 282.3 179 72.1
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 7.1e-74 281.6 210 64.3
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 9.2e-74 281.2 251 57.8
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 9.2e-74 281.2 274 56.2
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 7.8e-73 278.1 172 77.9
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 1.0e-72 277.7 245 59.2
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 2.5e-71 273.1 342 48.2
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 4.3e-71 272.3 251 54.6
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 5.6e-71 271.9 251 55.4
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 5.6e-71 271.9 168 77.4
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 4.4e-68 262.3 252 57.1
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 4.9e-67 258.8 260 53.1
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.9e-66 256.9 220 59.1
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.0e-64 249.6 246 52.4
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 2.1e-62 243.4 213 59.2
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 2.8e-62 243.0 184 62.5
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 4.8e-62 242.3 194 59.8
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 6.2e-62 241.9 210 61.4
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 8.1e-62 241.5 217 55.3
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.4e-61 240.7 140 80.0
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 9.0e-61 238.0 225 55.1
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 2.0e-60 236.9 175 64.6
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 2.6e-60 236.5 251 52.6
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.9e-58 230.3 172 66.9
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 2.4e-58 229.9 168 65.5
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.5e-57 226.1 248 50.8
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 7.9e-57 224.9 183 58.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.1e-53 214.5 163 65.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 8.4e-51 204.9 185 58.4
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 1.4e-50 204.1 189 56.1
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 1.4e-50 204.1 179 61.5
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 3.9e-48 196.1 186 55.4
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 6.7e-48 195.3 185 57.3
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 3.3e-47 193.0 240 43.3
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.6e-46 190.7 215 51.6
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 7.6e-44 181.8 181 48.6
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 4.2e-42 176.0 117 73.5
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 4.6e-41 172.6 154 60.4
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 5.1e-40 169.1 162 57.4
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 3.7e-38 162.9 159 53.5
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.8e-37 160.6 203 47.3
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 1.5e-36 157.5 155 54.2
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 2.6e-36 156.8 187 48.1
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 7.6e-36 155.2 101 75.2
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 5.0e-35 152.5 95 75.8
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 3.0e-32 143.3 121 57.0
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 3.0e-32 143.3 177 48.0
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 5.7e-31 139.0 129 55.0
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 7.4e-31 138.7 182 42.9
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 8.2e-30 135.2 113 59.3
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 4.1e-29 132.9 113 57.5
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 1.8e-24 117.5 132 47.7
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 1.8e-24 117.5 132 47.7
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 5.1e-24 115.9 76 75.0
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.8e-21 107.5 193 33.2
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 5.9e-20 102.4 67 64.2
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.9e-19 100.1 64 70.3
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 6.5e-19 99.0 68 70.6
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 1.9e-18 97.4 68 64.7
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 5.5e-18 95.9 130 46.2
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.3e-14 84.7 98 52.0
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 4.8e-14 82.8 98 51.0
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 3.1e-13 80.1 52 73.1
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.9e-10 70.9 103 43.7
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 8.2e-06 55.5 34 73.5


User provided reference genes

Program Settings