Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0096 Papaver somniferum HOM05D006958 ORTHO05D008814 1.6e-189 666.0 347 100.0
PSO541G2153 Papaver somniferum HOM05D006958 ORTHO05D008814 1.3e-183 646.4 347 93.9
PSO541G3524 Papaver somniferum HOM05D006958 ORTHO05D008814 1.2e-144 516.9 349 77.4
TAR376G0445 Trochodendron aralioides HOM05D006958 ORTHO05D008814 3.5e-112 409.1 361 58.4
Dinv39219 Davidia involucrata HOM05D006958 ORTHO05D008814 2.4e-105 386.3 353 56.4
MBI16_g23890_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D008814 4.5e-104 382.1 359 56.0
Actinidia10201 Actinidia chinensis HOM05D006958 ORTHO05D008814 1.3e-103 380.6 354 56.5
CSS0020437 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 3.3e-102 375.9 348 57.5
CSS0026693 Camellia sinensis var. sinensis HOM05D006958 ORTHO05D008814 1.0e-100 370.9 348 57.5
Nitab4.5_0002484g0050 Nicotiana tabacum HOM05D006958 ORTHO05D008814 1.0e-100 370.9 350 54.6
Manes.18G046700 Manihot esculenta HOM05D006958 ORTHO05D008814 2.0e-99 366.7 356 53.9
Actinidia22696 Actinidia chinensis HOM05D006958 ORTHO05D008814 2.6e-99 366.3 354 54.8
Nitab4.5_0004654g0020 Nicotiana tabacum HOM05D006958 ORTHO05D008814 4.4e-99 365.5 349 53.9
Thecc.08G088500 Theobroma cacao HOM05D006958 ORTHO05D008814 2.2e-98 363.2 351 53.3
Atru.chr13.835 Acer truncatum HOM05D006958 ORTHO05D008814 8.3e-98 361.3 351 51.9
MD15G1069100 Malus domestica HOM05D006958 ORTHO05D008814 1.1e-97 360.9 355 54.4
THA.LOC104816754 Tarenaya hassleriana HOM05D006958 ORTHO05D008814 2.4e-97 359.8 344 52.9
Cfa013775 Carpinus fangiana HOM05D006958 ORTHO05D008814 7.0e-97 358.2 354 52.0
Duzib093G1923 Durio zibethinus HOM05D006958 ORTHO05D008814 9.2e-97 357.8 351 53.8
Thhalv10023590m.g Eutrema salsugineum HOM05D006958 ORTHO05D008814 9.2e-97 357.8 305 57.4
Gorai.009G220300 Gossypium raimondii HOM05D006958 ORTHO05D008814 1.2e-96 357.5 351 53.3
Rhsim06G0062400 Rhododendron simsii HOM05D006958 ORTHO05D008814 1.6e-96 357.1 359 54.0
CANSAT25G3409 Cannabis sativa HOM05D006958 ORTHO05D008814 2.0e-96 356.7 355 52.1
RcHm_v2.0_Chr6g0309651 Rosa chinensis HOM05D006958 ORTHO05D008814 2.7e-96 356.3 348 51.4
Prupe.1G422600 Prunus persica HOM05D006958 ORTHO05D008814 5.9e-96 355.1 355 51.8
C01p36350 Brassica napus HOM05D006958 ORTHO05D008814 1.0e-95 354.4 314 56.4
PGR031G1511 Punica granatum HOM05D006958 ORTHO05D008814 1.3e-95 354.0 351 52.7
Gohir.D05G213600 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.7e-95 353.6 353 53.0
Haze_22433 Corylus avellana HOM05D006958 ORTHO05D008814 6.6e-95 351.7 353 51.0
Solyc04g077820.4 Solanum lycopersicum HOM05D006958 ORTHO05D008814 1.1e-94 350.9 349 52.1
COL.COLO4_28503 Corchorus olitorius HOM05D006958 ORTHO05D008814 1.9e-94 350.1 349 51.6
CiPaw.07G174600 Carya illinoinensis HOM05D006958 ORTHO05D008814 2.5e-94 349.7 353 51.6
CARHR283790 Cardamine hirsuta HOM05D006958 ORTHO05D008814 3.3e-94 349.4 305 58.0
Sopen04g031420 Solanum pennellii HOM05D006958 ORTHO05D008814 3.3e-94 349.4 351 51.9
CAN.G724.27 Capsicum annuum HOM05D006958 ORTHO05D008814 5.6e-94 348.6 348 53.7
AT1G59600 Arabidopsis thaliana HOM05D006958 ORTHO05D008814 1.2e-93 347.4 306 58.2
BolC1t03593H Brassica oleracea HOM05D006958 ORTHO05D008814 1.2e-93 347.4 314 56.4
TWI12G1073 Tripterygium wilfordii HOM05D006958 ORTHO05D008814 1.6e-93 347.1 360 51.1
Ciclev10001733m.g Citrus clementina HOM05D006958 ORTHO05D008814 3.6e-93 345.9 349 51.9
PGSC0003DMG400010608 Solanum tuberosum HOM05D006958 ORTHO05D008814 4.7e-93 345.5 362 51.1
Potri.002G118300 Populus trichocarpa HOM05D006958 ORTHO05D008814 8.0e-93 344.7 349 52.1
AL2G17470 Arabidopsis lyrata HOM05D006958 ORTHO05D008814 1.4e-92 344.0 306 57.2
Carub.0002s0585 Capsella rubella HOM05D006958 ORTHO05D008814 1.4e-92 344.0 306 57.2
Aqoxy6G02602 Aquilegia oxysepala HOM05D006958 ORTHO05D008814 2.3e-92 343.2 354 52.0
A01p28700 Brassica napus HOM05D006958 ORTHO05D008814 6.8e-92 341.7 314 58.0
FAN15G0662 Fragaria x ananassa HOM05D006958 ORTHO05D008814 8.9e-92 341.3 312 53.5
ClCG08G016520 Citrullus lanatus HOM05D006958 ORTHO05D008814 1.5e-91 340.5 351 52.1
BraA01t03033Z Brassica rapa HOM05D006958 ORTHO05D008814 2.0e-91 340.1 314 58.0
Sp2g04980 Schrenkiella parvula HOM05D006958 ORTHO05D008814 2.0e-91 340.1 314 56.1
FAN27G0228 Fragaria x ananassa HOM05D006958 ORTHO05D008814 3.4e-91 339.3 355 49.0
FvH4_2g33060 Fragaria vesca HOM05D006958 ORTHO05D008814 4.4e-91 339.0 351 49.9
FAN24G2490 Fragaria x ananassa HOM05D006958 ORTHO05D008814 5.8e-91 338.6 352 49.1
Migut.N02783 Erythranthe guttata HOM05D006958 ORTHO05D008814 2.2e-90 336.7 347 49.6
QL12p038133 Quercus lobata HOM05D006958 ORTHO05D008814 2.9e-90 336.3 355 49.9
arahy.Tifrunner.gnm1.ann1.JFD9T8 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.4e-89 334.0 347 51.6
Sed0002112 Sechium edule HOM05D006958 ORTHO05D008814 1.4e-89 334.0 351 52.1
Lsat_1_v5_gn_6_110920 Lactuca sativa HOM05D006958 ORTHO05D008814 3.2e-89 332.8 364 49.7
ATR0739G011 Amborella trichopoda HOM05D006958 ORTHO05D008814 5.4e-89 332.0 366 50.3
FAN20G1263 Fragaria x ananassa HOM05D006958 ORTHO05D008814 1.2e-88 330.9 364 47.3
Cpa.g.sc142.28 Carica papaya HOM05D006958 ORTHO05D008814 2.7e-88 329.7 283 56.9
Lalb_Chr14g0368181 Lupinus albus HOM05D006958 ORTHO05D008814 3.5e-88 329.3 353 50.7
HanXRQChr08g0229631 Helianthus annuus HOM05D006958 ORTHO05D008814 4.6e-88 328.9 360 51.7
BcaB04g20216 Brassica carinata HOM05D006958 ORTHO05D008814 6.0e-88 328.6 317 56.5
CsaV3_2G026090 Cucumis sativus L. HOM05D006958 ORTHO05D008814 6.0e-88 328.6 353 51.0
Lj4A758G77 Lonicera japonica HOM05D006958 ORTHO05D008814 1.0e-87 327.8 395 48.1
Hund05299 Selenicereus undatus HOM05D006958 ORTHO05D008814 1.3e-87 327.4 361 47.9
SGA_v2.0_scaffold28G11833 Striga asiatica HOM05D006958 ORTHO05D008814 3.9e-87 325.9 361 48.5
Sc02g0007890 Simmondsia chinensis HOM05D006958 ORTHO05D008814 6.6e-87 325.1 344 49.4
MELO3C010802.2 Cucumis melo HOM05D006958 ORTHO05D008814 2.5e-86 323.2 353 50.1
Eucgr.F02250 Eucalyptus grandis HOM05D006958 ORTHO05D008814 3.3e-86 322.8 353 46.2
Aa31LG2G10550 Aethionema arabicum HOM05D006958 ORTHO05D008814 1.4e-84 317.4 392 46.2
MSTRG.24376 Avicennia marina HOM05D006958 ORTHO05D008814 1.4e-84 317.4 353 47.9
Gohir.A05G210300 Gossypium hirsutum HOM05D006958 ORTHO05D008814 1.4e-84 317.4 285 56.5
Peaxi162Scf00081g02114 Petunia axillaris HOM05D006958 ORTHO05D008814 6.8e-84 315.1 352 48.9
HPP92_009523 Vanilla planifolia HOM05D006958 ORTHO05D008814 2.9e-82 309.7 310 52.3
TPR.G37796 Trifolium pratense HOM05D006958 ORTHO05D008814 8.3e-82 308.1 347 48.4
EL10Ac1g02379 Beta vulgaris HOM05D006958 ORTHO05D008814 1.6e-80 303.9 286 52.8
Lj5g0000926 Lotus japonicus HOM05D006958 ORTHO05D008814 1.6e-80 303.9 353 46.2
ECA246G2880 Erigeron canadensis HOM05D006958 ORTHO05D008814 5.1e-79 298.9 292 54.5
DCAR_020049 Daucus carota HOM05D006958 ORTHO05D008814 8.6e-79 298.1 340 47.1
VMungo0647G0836 Vigna mungo HOM05D006958 ORTHO05D008814 1.1e-78 297.7 320 49.4
Zm00001eb325900 Zea mays HOM05D006958 ORTHO05D008814 1.1e-78 297.7 350 44.3
unitig_744.g24127 Utricularia gibba HOM05D006958 ORTHO05D008814 1.9e-78 297.0 341 48.4
arahy.Tifrunner.gnm1.ann1.8TQ0W2 Arachis hypogaea HOM05D006958 ORTHO05D008814 1.2e-77 294.3 347 48.1
Ca_13215_v3 Cicer arietinum L. HOM05D006958 ORTHO05D008814 3.1e-76 289.7 354 44.9
Phvul.001G028000 Phaseolus vulgaris HOM05D006958 ORTHO05D008814 5.2e-76 288.9 338 47.9
Glyma.14G089018 Glycine max HOM05D006958 ORTHO05D008814 2.6e-75 286.6 345 47.2
Medtr1g018000 Medicago truncatula HOM05D006958 ORTHO05D008814 1.6e-72 277.3 344 46.2
GSVIVG01009341001 Vitis vinifera HOM05D006958 ORTHO05D008814 2.4e-57 226.9 212 54.7
CDE04G0359 Ceratophyllum demersum HOM05D006958 ORTHO05D008814 7.9e-56 221.9 228 52.2
Cc10_g05800 Coffea canephora HOM05D006958 ORTHO05D008814 4.8e-53 212.6 214 52.3
Pp3c12_1620 Physcomitrium patens HOM05D006958 ORTHO05D008814 4.5e-51 206.1 290 41.0
AUR62022479 Chenopodium quinoa HOM05D006958 ORTHO05D008814 9.6e-46 188.3 180 51.7
Oeu049903.1 Olea europaea HOM05D006958 ORTHO05D008814 3.8e-42 176.4 184 46.2
HPP92_009559 Vanilla planifolia HOM05D006958 ORTHO05D008814 2.1e-37 160.6 147 55.1
Os01g0593100 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 6.2e-37 159.1 210 44.8
Psat6g018160 Pisum sativum HOM05D006958 ORTHO05D008814 4.1e-36 156.4 248 39.9
Os07g0586000 Oryza sativa ssp. japonica HOM05D006958 ORTHO05D008814 1.5e-35 154.5 173 50.3
SMO334G0101 Selaginella moellendorffii HOM05D006958 ORTHO05D008814 6.5e-34 149.1 275 36.0
CBR_g51257 Chara braunii HOM05D006958 ORTHO05D008814 7.9e-32 142.1 330 31.5
SEGI_02529 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 2.8e-29 133.7 170 40.6
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 2.6e-27 127.1 125 55.2
BolC4t24190H Brassica oleracea HOM05D006958 ORTHO05D008814 4.2e-25 119.8 131 50.4
arahy.Tifrunner.gnm1.ann1.D1UQZZ Arachis hypogaea HOM05D006958 ORTHO05D008814 6.7e-23 112.5 293 30.0
Cfa010280 Carpinus fangiana HOM05D006958 ORTHO05D008814 9.7e-22 108.6 114 50.0
C04p26140 Brassica napus HOM05D006958 ORTHO05D008814 2.0e-19 100.9 107 49.5
BcaC02g10644 Brassica carinata HOM05D006958 ORTHO05D008814 1.9e-17 94.4 148 41.9
Psat7g107960 Pisum sativum HOM05D006958 ORTHO05D008814 1.2e-16 91.7 111 45.0
AUR62022480 Chenopodium quinoa HOM05D006958 ORTHO05D008814 7.9e-16 89.0 110 43.6
SEGI_26692 Sequoiadendron giganteum HOM05D006958 ORTHO05D008814 8.2e-13 79.0 83 49.4
HPP92_009560 Vanilla planifolia HOM05D001084 ORTHO05D001275 1.3e-10 71.6 52 67.3
Glyma.07G264001 Glycine max HOM05D006958 ORTHO05D008814 9.4e-09 65.5 82 45.1
Ah.09g227430 Amaranthus hybridus HOM05D006958 ORTHO05D008814 6.7e-07 59.3 72 40.3
Psat0s3396g0160 Pisum sativum HOM05D006958 ORTHO05D008814 5.7e-06 56.2 35 62.9


User provided reference genes

Program Settings