Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.1e-153 546.6 279 100.0
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 4.4e-150 534.6 280 98.6
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.7e-40 169.5 283 45.6
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 9.5e-36 154.8 285 42.5
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 3.6e-35 152.9 285 42.5
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 6.1e-35 152.1 301 39.5
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.4e-34 151.0 284 40.8
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 3.0e-34 149.8 282 42.6
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 2.6e-33 146.7 281 40.2
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 4.4e-33 146.0 282 41.8
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.7e-32 142.9 286 40.6
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.9e-32 142.5 181 50.3
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.4e-32 142.1 284 40.1
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 8.3e-32 141.7 219 45.2
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.1e-31 141.4 284 39.8
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.4e-31 141.0 254 42.1
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 3.2e-31 139.8 285 41.1
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 4.1e-31 139.4 252 42.1
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 4.1e-31 139.4 247 43.3
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 4.1e-31 139.4 281 40.2
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 5.4e-31 139.0 197 47.7
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 5.4e-31 139.0 286 40.6
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 9.2e-31 138.3 286 40.2
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.2e-30 137.9 195 45.6
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.6e-30 137.5 281 39.5
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 2.0e-30 137.1 286 41.3
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.7e-30 136.7 220 44.1
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.7e-30 136.7 283 41.0
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 5.9e-30 135.6 286 39.5
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 7.8e-30 135.2 261 40.2
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.0e-29 134.8 202 46.0
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.0e-29 134.8 283 41.0
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.7e-29 134.0 253 40.7
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.7e-29 134.0 285 40.4
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 2.3e-29 133.7 284 39.8
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.3e-29 133.7 186 46.2
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 3.0e-29 133.3 286 38.5
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 5.0e-29 132.5 246 41.9
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 5.0e-29 132.5 286 38.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 5.0e-29 132.5 284 39.1
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 5.0e-29 132.5 284 38.7
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 6.6e-29 132.1 284 38.7
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 6.6e-29 132.1 290 39.3
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 6.6e-29 132.1 286 40.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.5e-28 131.0 281 38.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.5e-28 131.0 257 40.9
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 2.5e-28 130.2 316 37.3
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 4.3e-28 129.4 291 39.9
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 4.3e-28 129.4 162 50.6
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.6e-28 129.0 283 37.1
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 5.6e-28 129.0 282 40.1
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.6e-28 129.0 292 36.3
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 9.5e-28 128.3 284 35.9
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.2e-27 127.9 293 38.2
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.2e-27 127.9 293 37.2
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.2e-27 127.9 204 45.1
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.2e-27 127.9 201 42.8
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.1e-27 127.1 204 45.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 2.8e-27 126.7 281 40.6
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.8e-27 126.7 251 39.8
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.6e-27 126.3 282 39.4
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 4.7e-27 125.9 206 42.2
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 6.2e-27 125.6 291 38.8
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 6.2e-27 125.6 283 36.4
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 8.0e-27 125.2 282 39.0
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 8.0e-27 125.2 299 39.5
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.1e-26 124.8 294 37.1
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.4e-26 124.4 173 47.4
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 4.0e-26 122.9 172 48.8
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 4.0e-26 122.9 292 36.6
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 6.8e-26 122.1 283 37.1
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.2e-25 121.3 184 45.1
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 1.2e-25 121.3 203 44.8
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.0e-25 120.6 288 37.5
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.0e-25 120.6 288 37.5
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.6e-25 120.2 288 38.5
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.6e-25 120.2 288 38.9
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 3.4e-25 119.8 294 36.4
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 3.4e-25 119.8 174 50.0
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.4e-25 119.4 293 37.9
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 7.5e-25 118.6 228 41.2
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.5e-25 118.6 228 41.2
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.8e-25 118.2 177 45.8
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.8e-25 118.2 177 44.1
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.8e-25 118.2 177 44.1
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 9.8e-25 118.2 149 48.3
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.3e-24 117.9 179 44.7
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.3e-24 117.9 282 37.6
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.3e-24 117.9 187 43.3
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.7e-24 117.5 163 47.2
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.7e-24 117.5 174 45.4
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 1.7e-24 117.5 175 45.7
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.2e-24 117.1 193 42.0
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 2.2e-24 117.1 235 40.9
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.9e-24 116.7 290 37.2
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 3.7e-24 116.3 174 45.4
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 6.4e-24 115.5 197 42.1
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 8.3e-24 115.2 285 35.4
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 8.3e-24 115.2 256 36.7
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.9e-23 114.0 173 42.2
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.9e-23 114.0 204 44.6
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-23 112.8 219 39.7
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.0e-23 112.1 284 36.3
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 9.2e-23 111.7 162 46.9
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.2e-22 111.3 167 46.1
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.6e-22 110.9 163 46.0
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 2.0e-22 110.5 165 47.3
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 2.0e-22 110.5 159 46.5
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 2.0e-22 110.5 159 46.5
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 2.0e-22 110.5 163 46.6
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 2.7e-22 110.2 173 45.1
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.5e-22 109.8 189 42.3
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.5e-22 109.8 151 45.7
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 4.6e-22 109.4 281 35.9
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 4.6e-22 109.4 151 46.4
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 6.0e-22 109.0 215 42.3
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.8e-22 108.6 176 43.8
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.0e-21 108.2 155 44.5
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.0e-21 108.2 149 47.7
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 1.7e-21 107.5 161 46.6
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.7e-21 107.5 152 45.4
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 3.0e-21 106.7 176 44.3
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 3.0e-21 106.7 176 44.3
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 6.6e-21 105.5 159 44.7
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 6.6e-21 105.5 333 34.8
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 8.6e-21 105.1 206 41.3
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-20 104.8 177 43.5
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.1e-20 104.8 211 39.8
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.5e-20 104.4 198 40.9
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 2.5e-20 103.6 211 38.9
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.3e-20 103.2 162 43.2
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 4.3e-20 102.8 164 42.7
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 4.3e-20 102.8 179 40.8
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.2e-19 101.3 164 43.3
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 4.7e-19 99.4 280 35.7
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 4.7e-19 99.4 173 40.5
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.7e-19 99.4 207 38.6
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.2e-19 99.0 160 42.5
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 6.2e-19 99.0 144 41.7
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 8.1e-19 98.6 159 41.5
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.1e-18 98.2 176 42.0
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.1e-18 98.2 166 41.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.8e-18 97.4 279 34.8
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 2.3e-18 97.1 176 41.5
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 3.1e-18 96.7 181 42.5
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.1e-18 96.7 161 42.2
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.0e-18 96.3 177 42.9
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.0e-18 96.3 162 42.0
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 5.2e-18 95.9 173 43.4
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.9e-18 95.1 189 39.2
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.9e-18 95.1 168 41.7
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.5e-17 94.4 175 40.0
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.6e-17 93.6 174 39.1
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.4e-17 93.2 291 32.6
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 4.4e-17 92.8 281 34.9
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-16 91.3 175 38.9
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.3e-16 91.3 189 38.6
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 2.9e-16 90.1 176 39.8
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.9e-16 90.1 163 39.9
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 7.1e-15 85.5 121 47.1
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 2.1e-14 84.0 155 40.0
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.7e-13 80.9 170 32.4
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 2.8e-11 73.6 153 36.6
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 3.6e-11 73.2 131 40.5
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 8.1e-11 72.0 178 34.8
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 6.8e-10 68.9 51 68.6
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.2e-09 68.2 67 64.2
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 4.4e-09 66.2 253 29.2
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 5.8e-09 65.9 207 31.4
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 8.4e-08 62.0 164 32.9
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.1e-07 59.7 70 52.9
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.6e-06 57.8 54 55.6
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.1e-06 57.4 78 44.9
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 4.6e-06 56.2 158 28.5
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 7.8e-06 55.5 147 34.0


User provided reference genes

Program Settings