Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 2.2e-307 1058.1 534 100.0
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.0e-264 916.4 479 96.9
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.0e-155 554.3 520 57.7
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 3.1e-136 489.6 520 53.1
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.3e-134 484.2 465 57.2
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 1.2e-132 477.6 519 53.4
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 9.7e-130 468.0 522 51.3
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 3.7e-129 466.1 520 51.0
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 2.4e-128 463.4 523 49.9
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 3.0e-123 446.4 525 50.7
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 3.9e-123 446.0 517 48.7
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 8.8e-123 444.9 520 49.2
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 1.7e-121 440.7 524 47.5
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 3.1e-120 436.4 523 50.5
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 3.1e-120 436.4 524 48.5
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 5.3e-120 435.6 522 48.3
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.5e-119 434.1 352 63.4
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 7.7e-119 431.8 520 49.2
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.9e-117 427.2 519 49.3
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.1e-116 423.7 518 49.4
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 2.7e-116 423.3 522 47.9
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 4.7e-116 422.5 522 47.5
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 8.0e-116 421.8 529 47.6
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.8e-115 420.6 522 47.7
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.0e-115 419.9 519 49.3
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 6.7e-115 418.7 521 47.6
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.5e-114 417.5 447 51.0
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 7.4e-114 415.2 446 52.7
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 9.7e-114 414.8 530 47.2
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.7e-113 414.1 525 46.5
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 5.9e-111 405.6 463 49.0
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.3e-110 404.4 525 47.0
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 2.9e-110 403.3 516 46.5
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 7.2e-109 398.7 577 44.4
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 9.4e-109 398.3 525 45.7
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 8.0e-108 395.2 572 44.6
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.3e-107 393.7 521 47.0
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 8.8e-107 391.7 527 45.2
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 8.8e-107 391.7 528 43.6
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 3.3e-106 389.8 447 48.1
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 9.7e-106 388.3 522 45.2
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 2.2e-105 387.1 492 45.9
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 1.1e-104 384.8 488 47.3
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 1.2e-103 381.3 519 43.2
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 1.6e-103 380.9 461 47.5
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 5.9e-103 379.0 471 46.3
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 2.2e-102 377.1 522 44.1
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.9e-102 376.7 523 43.0
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 1.5e-101 374.4 523 43.6
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 4.2e-101 372.9 563 42.3
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 1.2e-100 371.3 520 42.3
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.7e-100 370.2 452 45.8
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 4.7e-100 369.4 523 41.5
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 1.0e-99 368.2 402 49.8
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 2.3e-99 367.1 521 43.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 3.0e-99 366.7 524 42.9
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 3.0e-99 366.7 467 45.0
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 4.0e-99 366.3 523 43.0
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 5.2e-99 365.9 526 42.0
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.6e-98 363.6 437 47.8
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 4.4e-98 362.8 506 43.1
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 4.4e-98 362.8 519 42.0
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 5.7e-98 362.5 464 45.5
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 9.8e-98 361.7 458 45.2
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.3e-97 361.3 534 42.5
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 2.8e-97 360.1 530 41.9
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 2.8e-97 360.1 472 45.3
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 2.8e-97 360.1 560 41.8
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 3.7e-97 359.8 436 47.2
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.8e-96 357.5 520 42.3
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 5.4e-96 355.9 436 46.3
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 5.4e-96 355.9 456 44.5
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 7.0e-96 355.5 528 42.6
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.2e-95 354.8 422 46.7
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 2.0e-95 354.0 518 41.9
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 7.7e-95 352.1 454 44.5
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 1.3e-94 351.3 534 40.8
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 2.9e-94 350.1 520 41.5
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 5.0e-94 349.4 536 42.2
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 1.5e-93 347.8 449 45.9
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 9.5e-93 345.1 448 46.0
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 1.6e-92 344.4 536 41.6
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 2.8e-92 343.6 448 46.0
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 6.1e-92 342.4 536 41.4
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 1.0e-91 341.7 447 45.9
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.4e-91 341.3 448 45.3
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-91 341.3 448 45.3
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 1.8e-91 340.9 607 36.9
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 2.3e-91 340.5 486 43.6
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 1.3e-89 334.7 497 41.0
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.7e-89 334.3 304 57.9
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 2.2e-89 334.0 368 50.0
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 1.8e-88 330.9 526 41.3
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 5.0e-86 322.8 457 43.3
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 3.1e-83 313.5 436 43.1
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 1.3e-81 308.1 379 44.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 4.9e-81 306.2 525 39.2
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 9.5e-77 292.0 420 41.7
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 4.9e-73 279.6 434 38.2
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.4e-67 261.5 206 65.0
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.9e-65 253.8 382 41.4
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.4e-58 229.9 305 44.6
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.5e-53 214.9 304 44.1
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 1.5e-53 214.9 519 33.3
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 2.0e-50 204.5 295 43.1
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 6.4e-49 199.5 218 52.8
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 7.1e-48 196.1 449 32.1
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.7e-46 191.4 302 40.1
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 2.4e-43 181.0 464 31.5
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 2.9e-41 174.1 222 43.7
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 4.9e-41 173.3 468 32.9
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 7.9e-39 166.0 142 58.5
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 8.7e-38 162.5 461 30.4
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.7e-33 148.3 124 61.3
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 2.1e-31 141.4 137 50.4
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.7e-31 141.0 269 38.7
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 9.6e-29 132.5 125 55.2
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 1.1e-24 119.0 119 49.6
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 4.6e-23 113.6 283 33.6
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 2.0e-18 98.2 172 39.5
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 1.6e-15 88.6 74 55.4
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.9e-15 86.3 104 43.3
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.1e-13 82.4 95 44.2
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 7.4e-13 79.7 109 45.9
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 8.2e-12 76.3 192 27.6
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 3.2e-08 64.3 153 34.0
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 1.6e-07 62.0 67 46.3


User provided reference genes

Program Settings