Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 9.1e-117 423.7 233 100.0
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.7e-115 419.5 233 98.7
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 3.1e-64 249.2 216 64.8
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 9.9e-63 244.2 221 64.7
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 9.9e-63 244.2 217 62.7
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.3e-62 243.8 218 61.9
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 6.4e-62 241.5 220 70.0
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.1e-61 240.7 215 61.9
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 4.2e-61 238.8 214 68.2
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.2e-61 238.8 214 68.2
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 7.1e-61 238.0 217 69.1
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 9.3e-61 237.7 215 68.4
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 1.2e-60 237.3 214 70.6
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.1e-60 236.5 214 67.8
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 2.1e-60 236.5 209 70.3
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 2.1e-60 236.5 224 63.8
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.7e-60 236.1 218 62.4
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.7e-60 236.1 218 62.4
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 3.5e-60 235.7 216 66.7
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 6.0e-60 235.0 224 63.8
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.0e-59 234.2 216 58.3
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.3e-59 233.8 214 65.0
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 2.3e-59 233.0 218 59.6
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 3.0e-59 232.6 214 63.6
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 3.9e-59 232.3 217 62.7
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.1e-59 231.9 213 63.4
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 8.7e-59 231.1 223 63.2
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 8.7e-59 231.1 213 63.4
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 8.7e-59 231.1 213 63.4
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 1.1e-58 230.7 216 58.3
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.1e-58 230.7 216 58.3
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 1.1e-58 230.7 214 67.3
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 1.9e-58 229.9 213 61.0
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 3.3e-58 229.2 221 64.3
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 3.3e-58 229.2 215 61.9
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 9.6e-58 227.6 232 65.1
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 9.6e-58 227.6 213 66.2
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 9.6e-58 227.6 214 67.3
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.3e-57 227.3 225 58.2
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 2.1e-57 226.5 216 66.7
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 4.8e-57 225.3 214 58.4
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.1e-56 224.2 217 63.6
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.4e-56 223.8 214 65.0
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 1.8e-56 223.4 221 62.9
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 1.8e-56 223.4 216 58.3
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 2.4e-56 223.0 214 66.4
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.4e-56 223.0 217 62.7
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 2.4e-56 223.0 215 62.8
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 3.1e-56 222.6 216 59.7
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 4.0e-56 222.2 206 63.6
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 4.0e-56 222.2 216 57.4
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 6.9e-56 221.5 217 63.6
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 9.0e-56 221.1 230 58.3
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.0e-56 221.1 213 59.2
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 9.0e-56 221.1 218 56.4
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.5e-55 220.3 216 59.3
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.0e-55 219.9 199 60.3
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 2.0e-55 219.9 222 63.5
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 3.4e-55 219.2 214 62.1
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 3.4e-55 219.2 220 64.1
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.3e-54 217.2 224 62.1
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.2e-54 216.5 224 62.1
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 2.9e-54 216.1 207 58.5
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.9e-54 216.1 216 55.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.8e-54 215.7 216 59.3
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 3.8e-54 215.7 230 61.7
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 3.8e-54 215.7 227 60.8
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 3.8e-54 215.7 220 59.5
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 4.9e-54 215.3 216 57.9
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 8.4e-54 214.5 218 55.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 1.1e-53 214.2 218 67.0
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 1.1e-53 214.2 221 63.3
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 1.4e-53 213.8 215 60.0
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.9e-53 213.4 222 56.3
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 2.4e-53 213.0 216 57.9
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 4.2e-53 212.2 213 60.1
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 5.5e-53 211.8 220 56.4
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 9.3e-53 211.1 225 60.4
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 1.6e-52 210.3 226 60.6
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 3.5e-52 209.1 216 58.8
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.6e-52 208.8 217 54.8
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 7.9e-52 208.0 213 59.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.0e-51 207.6 230 60.0
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.3e-51 207.2 213 59.2
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.0e-51 206.1 219 57.5
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.0e-51 206.1 250 55.6
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 5.1e-51 205.3 221 54.3
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 5.1e-51 205.3 215 55.3
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 1.1e-50 204.1 209 53.6
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 4.3e-50 202.2 224 53.6
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 5.6e-50 201.8 243 56.8
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 9.6e-50 201.1 201 61.7
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.1e-49 199.9 212 59.4
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 2.8e-49 199.5 218 54.1
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 2.8e-49 199.5 221 53.8
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.8e-49 198.7 208 58.2
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 4.8e-49 198.7 218 60.6
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.1e-48 196.1 161 62.1
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.5e-47 193.7 231 51.1
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.5e-47 193.7 172 60.5
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.0e-47 193.4 214 53.7
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 2.0e-47 193.4 220 57.3
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 4.5e-47 192.2 156 64.1
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.2e-46 189.9 221 51.6
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 2.9e-46 189.5 229 57.6
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.9e-46 188.7 211 55.9
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.1e-45 187.6 218 49.5
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 2.5e-45 186.4 223 55.2
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 4.2e-45 185.7 226 51.3
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.6e-44 183.7 208 51.9
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 5.1e-43 178.7 138 68.1
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 5.1e-43 178.7 206 55.8
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 4.8e-41 172.2 198 58.1
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.4e-40 169.9 224 54.0
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 3.8e-38 162.5 212 47.2
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.9e-37 160.2 191 52.4
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.7e-36 156.4 129 62.8
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 2.7e-36 156.4 223 47.5
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.1e-35 152.1 126 60.3
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 5.1e-35 152.1 168 56.0
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 5.7e-34 148.7 159 49.1
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.3e-33 147.5 208 45.2
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 6.3e-33 145.2 237 38.0
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.3e-32 142.1 221 39.8
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.2e-31 141.0 162 48.1
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 5.9e-31 138.7 135 57.8
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.0e-30 137.9 145 53.1
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 2.9e-30 136.3 216 39.8
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 9.4e-29 131.3 109 59.6
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 2.1e-28 130.2 202 41.1
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 4.7e-28 129.0 126 61.9
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.7e-28 129.0 124 62.1
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.0e-27 126.3 124 61.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 5.1e-27 125.6 145 45.5
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 1.5e-26 124.0 145 43.4
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 9.7e-26 121.3 138 45.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.1e-24 115.9 112 50.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.0e-23 113.6 201 40.3
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 5.9e-23 112.1 121 55.4
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.0e-22 111.3 88 53.4
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 5.5e-21 105.5 108 54.6
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.6e-20 104.0 210 33.8
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.1e-20 103.6 87 51.7
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 8.0e-20 101.7 146 37.7
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.7e-19 98.6 131 38.2
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 6.7e-19 98.6 129 41.1
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.0e-18 97.1 84 51.2
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.0e-18 97.1 85 50.6
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 1.4e-16 90.9 115 52.2
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 5.3e-16 89.0 205 36.1
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.6e-15 87.4 110 43.6
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 1.3e-14 84.3 114 50.9
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 3.8e-14 82.8 116 42.2
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 2.6e-10 70.1 83 49.4
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 3.3e-10 69.7 99 48.5
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 1.3e-06 57.8 85 42.4


User provided reference genes

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