Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO648G0089 Papaver somniferum HOM05D005509 ORTHO05D006411 1.2e-101 373.2 202 100.0
PSO339G1164 Papaver somniferum HOM05D005509 ORTHO05D006411 7.7e-96 354.0 202 96.5
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 5.4e-65 251.5 202 67.8
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 7.0e-65 251.1 202 70.3
TAR369G0916 Trochodendron aralioides HOM05D005509 ORTHO05D006411 6.0e-64 248.1 202 67.8
TAR369G1093 Trochodendron aralioides HOM05D005509 ORTHO05D006411 6.0e-64 248.1 202 67.8
Aqoxy2G02060 Aquilegia oxysepala HOM05D005509 ORTHO05D006411 1.9e-62 243.0 202 65.3
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 4.3e-62 241.9 211 64.0
Atru.chr12.494 Acer truncatum HOM05D005509 ORTHO05D006411 1.2e-61 240.4 202 64.9
CSS0042515 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 1.1e-60 237.3 202 63.4
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 2.3e-60 236.1 203 63.5
ClCG07G003330 Citrullus lanatus HOM05D005509 ORTHO05D006411 3.1e-60 235.7 204 62.3
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 3.1e-60 235.7 207 63.3
Psat6g235920 Pisum sativum HOM05D005509 ORTHO05D006411 8.9e-60 234.2 202 64.9
DCAR_015180 Daucus carota HOM05D005509 ORTHO05D006411 1.5e-59 233.4 175 69.1
Hma1.2p1_0533F.1_g173520 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 2.0e-59 233.0 206 61.2
arahy.Tifrunner.gnm1.ann1.LMNG4E Arachis hypogaea HOM05D005509 ORTHO05D006411 2.6e-59 232.6 205 62.9
Ciclev10032822m.g Citrus clementina HOM05D005509 ORTHO05D006411 2.6e-59 232.6 202 62.9
COL.COLO4_14983 Corchorus olitorius HOM05D005509 ORTHO05D006411 2.6e-59 232.6 202 62.9
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 3.4e-59 232.3 202 62.9
Ca_11287_v3 Cicer arietinum L. HOM05D005509 ORTHO05D006411 4.4e-59 231.9 202 63.4
Dinv25997 Davidia involucrata HOM05D005509 ORTHO05D006411 4.4e-59 231.9 202 63.4
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 4.4e-59 231.9 204 63.7
TPR.G13986 Trifolium pratense HOM05D005509 ORTHO05D006411 9.8e-59 230.7 202 63.9
AUR62036379 Chenopodium quinoa HOM05D005509 ORTHO05D006411 1.3e-58 230.3 205 60.0
Lj8A85G36 Lonicera japonica HOM05D005509 ORTHO05D006411 1.7e-58 229.9 202 62.9
Lj5g0000580 Lotus japonicus HOM05D005509 ORTHO05D006411 2.9e-58 229.2 203 61.6
Manes.10G032200 Manihot esculenta HOM05D005509 ORTHO05D006411 2.9e-58 229.2 202 61.4
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 4.9e-58 228.4 203 64.0
Cc02_g08060 Coffea canephora HOM05D005509 ORTHO05D006411 4.9e-58 228.4 199 61.3
Medtr1g115285 Medicago truncatula HOM05D005509 ORTHO05D006411 6.4e-58 228.0 202 61.9
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 8.3e-58 227.6 202 61.4
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 8.3e-58 227.6 204 59.3
Actinidia13870 Actinidia chinensis HOM05D005509 ORTHO05D006411 1.9e-57 226.5 203 61.1
Gohir.A10G216300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 1.9e-57 226.5 202 61.4
AUR62030741 Chenopodium quinoa HOM05D005509 ORTHO05D006411 3.2e-57 225.7 211 61.6
LjContig00357g0008800 Lotus japonicus HOM05D005509 ORTHO05D006411 3.2e-57 225.7 202 61.4
Gohir.D10G225300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 5.4e-57 224.9 202 60.9
Gorai.011G256300 Gossypium raimondii HOM05D005509 ORTHO05D006411 5.4e-57 224.9 202 60.9
Phvul.007G011900 Phaseolus vulgaris HOM05D005509 ORTHO05D006411 7.1e-57 224.6 202 60.9
Duzib106G1457 Durio zibethinus HOM05D005509 ORTHO05D006411 9.2e-57 224.2 202 60.9
Potri.010G207000 Populus trichocarpa HOM05D005509 ORTHO05D006411 2.1e-56 223.0 202 60.4
Glyma.20G099700 Glycine max HOM05D005509 ORTHO05D006411 3.5e-56 222.2 202 59.9
VMungo0720G2814 Vigna mungo HOM05D005509 ORTHO05D006411 6.0e-56 221.5 202 59.9
MBI14_g11685_MAGBIO Magnolia biondii HOM05D005509 ORTHO05D006411 7.8e-56 221.1 174 66.1
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 1.0e-55 220.7 175 65.7
CANSAT56G3940 Cannabis sativa HOM05D005509 ORTHO05D006411 3.9e-55 218.8 206 61.7
EL10Ac2g03407 Beta vulgaris HOM05D005509 ORTHO05D006411 6.6e-55 218.0 173 64.2
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 6.6e-55 218.0 203 60.6
Duzib114G0718 Durio zibethinus HOM05D005509 ORTHO05D006411 8.6e-55 217.6 199 59.8
Glyma.10G289200 Glycine max HOM05D005509 ORTHO05D006411 8.6e-55 217.6 202 59.9
Lalb_Chr21g0307401 Lupinus albus HOM05D005509 ORTHO05D006411 8.6e-55 217.6 203 60.1
Rhsim09G0165100 Rhododendron simsii HOM05D005509 ORTHO05D006411 8.6e-55 217.6 176 63.6
Sabra08G0038700 Salix brachista HOM05D005509 ORTHO05D006411 1.5e-54 216.9 202 60.9
CANSAT56G0048 Cannabis sativa HOM05D005509 ORTHO05D006411 1.9e-54 216.5 208 62.0
ATR0559G011 Amborella trichopoda HOM05D005509 ORTHO05D006411 2.5e-54 216.1 214 56.5
Cpa.g.sc1.389 Carica papaya HOM05D005509 ORTHO05D006411 9.5e-54 214.2 202 57.9
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 2.1e-53 213.0 196 62.2
CDE02G1375 Ceratophyllum demersum HOM05D005509 ORTHO05D006411 2.8e-53 212.6 201 56.2
CSS0029595 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 2.3e-52 209.5 173 63.6
HPP92_001486 Vanilla planifolia HOM05D005509 ORTHO05D006411 4.0e-52 208.8 196 57.1
FAN01G1468 Fragaria x ananassa HOM05D005509 ORTHO05D006411 8.9e-52 207.6 181 62.4
FvH4_7g22070 Fragaria vesca HOM05D005509 ORTHO05D006411 1.5e-51 206.8 181 62.4
FAN06G1416 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.5e-51 206.8 181 62.4
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 2.0e-51 206.5 202 55.9
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 2.0e-51 206.5 202 56.4
FAN03G3362 Fragaria x ananassa HOM05D005509 ORTHO05D006411 2.0e-51 206.5 180 62.2
CARHR165400 Cardamine hirsuta HOM05D005509 ORTHO05D006411 3.4e-51 205.7 201 54.2
FAN06G2974 Fragaria x ananassa HOM05D005509 ORTHO05D006411 3.4e-51 205.7 181 61.9
RcHm_v2.0_Chr1g0366461 Rosa chinensis HOM05D005509 ORTHO05D006411 3.4e-51 205.7 177 62.7
A09p48320 Brassica napus HOM05D005509 ORTHO05D006411 4.4e-51 205.3 202 55.4
BraA09t40284Z Brassica rapa HOM05D005509 ORTHO05D006411 4.4e-51 205.3 202 55.4
BcaB01g00105 Brassica carinata HOM05D005509 ORTHO05D006411 9.9e-51 204.1 202 55.4
MD01G1125700 Malus domestica HOM05D005509 ORTHO05D006411 1.3e-50 203.8 203 57.6
AL5G36540 Arabidopsis lyrata HOM05D005509 ORTHO05D006411 1.7e-50 203.4 201 55.2
C08p30610 Brassica napus HOM05D005509 ORTHO05D006411 1.7e-50 203.4 202 55.0
AT3G55390 Arabidopsis thaliana HOM05D005509 ORTHO05D006411 2.2e-50 203.0 201 55.2
BolC8t50677H Brassica oleracea HOM05D005509 ORTHO05D006411 3.7e-50 202.2 202 54.5
Carub.0005s2210 Capsella rubella HOM05D005509 ORTHO05D006411 4.9e-50 201.8 201 54.7
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 4.9e-50 201.8 201 54.2
Lsat_1_v5_gn_2_116581 Lactuca sativa HOM05D005509 ORTHO05D006411 8.3e-50 201.1 174 60.9
HanXRQChr14g0458211 Helianthus annuus HOM05D005509 ORTHO05D006411 1.4e-49 200.3 197 57.9
Aa31LG10G10410 Aethionema arabicum HOM05D005509 ORTHO05D006411 1.9e-49 199.9 175 57.1
Nitab4.5_0005525g0100 Nicotiana tabacum HOM05D005509 ORTHO05D006411 7.1e-49 198.0 205 56.1
Nitab4.5_0003969g0090 Nicotiana tabacum HOM05D005509 ORTHO05D006411 2.1e-48 196.4 205 55.6
Nitab4.5_0014743g0010 Nicotiana tabacum HOM05D005509 ORTHO05D006411 4.6e-48 195.3 202 56.9
THA.LOC104810024 Tarenaya hassleriana HOM05D005509 ORTHO05D006411 4.6e-48 195.3 202 55.9
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 3.9e-47 192.2 200 56.0
Nn2g12800 Nelumbo nucifera HOM05D005509 ORTHO05D006411 6.6e-47 191.4 144 69.4
Lsat_1_v5_gn_8_16220 Lactuca sativa HOM05D005509 ORTHO05D006411 1.1e-46 190.7 201 55.7
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 1.1e-46 190.7 174 56.3
Solyc05g054560.3 Solanum lycopersicum HOM05D005509 ORTHO05D006411 1.9e-46 189.9 209 51.7
ECA233G3830 Erigeron canadensis HOM05D005509 ORTHO05D006411 1.2e-45 187.2 198 53.0
HanXRQChr08g0220491 Helianthus annuus HOM05D005509 ORTHO05D006411 6.2e-45 184.9 204 52.0
Sopen05g033040 Solanum pennellii HOM05D005509 ORTHO05D006411 1.1e-44 184.1 209 50.2
PGSC0003DMG400023526 Solanum tuberosum HOM05D005509 ORTHO05D006411 4.0e-44 182.2 132 67.4
Peaxi162Scf00015g01412 Petunia axillaris HOM05D005509 ORTHO05D006411 5.2e-44 181.8 204 55.9
Nitab4.5_0001831g0030 Nicotiana tabacum HOM05D005509 ORTHO05D006411 1.5e-43 180.3 138 65.2
Peaxi162Scf00760g00127 Petunia axillaris HOM05D005509 ORTHO05D006411 5.8e-43 178.3 190 55.3
FAN01G0775 Fragaria x ananassa HOM05D005509 ORTHO05D006411 1.7e-42 176.8 195 53.8
BcaB02g08425 Brassica carinata HOM05D005509 ORTHO05D006411 1.2e-40 170.6 202 50.0
CDE09G0335 Ceratophyllum demersum HOM05D002573 ORTHO05D002918 2.1e-40 169.9 140 56.4
Actinidia29219 Actinidia chinensis HOM05D005509 ORTHO05D006411 6.6e-39 164.9 207 53.1
ECA238G2577 Erigeron canadensis HOM05D005509 ORTHO05D006411 8.7e-39 164.5 137 60.6
HPP92_006606 Vanilla planifolia HOM05D005509 ORTHO05D006411 4.4e-35 152.1 146 58.9
SEGI_26621 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 3.0e-31 139.4 140 50.0
MELO3C023854.2 Cucumis melo HOM05D005509 ORTHO05D006411 3.3e-30 136.0 138 55.8
Pp3c10_18090 Physcomitrium patens HOM05D005509 ORTHO05D006411 2.4e-28 129.8 171 43.9
arahy.Tifrunner.gnm1.ann1.QH4526 Arachis hypogaea HOM05D005509 ORTHO05D006411 4.0e-28 129.0 130 57.7
Oeu051004.1 Olea europaea HOM05D005509 ORTHO05D006411 2.6e-27 126.3 99 64.6
Pp3c3_30480 Physcomitrium patens HOM05D005509 ORTHO05D006411 3.4e-27 125.9 172 41.3
Pp3c12_23720 Physcomitrium patens HOM05D005509 ORTHO05D006411 1.7e-26 123.6 175 39.4
Hma1.2p1_2608F.1_g325340 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 6.4e-26 121.7 83 71.1
Sabra08G0038600 Salix brachista HOM05D005509 ORTHO05D006411 4.2e-25 119.0 162 46.9
Sabra10G0159800 Salix brachista HOM05D005509 ORTHO05D006411 1.6e-24 117.1 120 54.2
Haze_17044 Corylus avellana HOM05D005509 ORTHO05D006411 3.5e-24 115.9 205 42.0
Cfa001498 Carpinus fangiana HOM05D005509 ORTHO05D006411 3.0e-23 112.8 120 55.8
FAN10G3714 Fragaria x ananassa HOM05D005509 ORTHO05D006411 3.0e-23 112.8 103 59.2
AagrBONN_evm.TU.Sc2ySwM_117.824 Anthoceros agrestis HOM05D005509 ORTHO05D006411 9.6e-22 107.8 138 42.0
Zm00001eb136610 Zea mays HOM05D005509 ORTHO05D006411 2.7e-16 89.7 127 39.4
Os12g0568700 Oryza sativa ssp. japonica HOM05D005509 ORTHO05D006411 2.6e-11 73.2 89 44.9
C04p36990 Brassica napus HOM05D005509 ORTHO05D006411 7.6e-11 71.6 148 37.8
Nn2g12496 Nelumbo nucifera HOM05D005509 ORTHO05D006411 6.5e-10 68.6 51 68.6
Rhsim08G0179200 Rhododendron simsii HOM05D005509 ORTHO05D006411 3.2e-09 66.2 87 46.0
Rhsim09G0001400 Rhododendron simsii HOM05D001561 ORTHO05D001715 9.3e-09 64.7 81 46.9
Nn1g05020 Nelumbo nucifera HOM05D005509 ORTHO05D006411 1.6e-08 63.9 82 50.0
Carub.0002s2773 Capsella rubella HOM05D005732 ORTHO05D007062 2.7e-08 63.2 121 32.2
C04p27060 Brassica napus HOM05D005509 ORTHO05D006411 3.5e-08 62.8 105 41.0
BolC4t24086H Brassica oleracea HOM05D005509 ORTHO05D006411 3.5e-08 62.8 105 41.0
Rhsim08G0176800 Rhododendron simsii HOM05D005509 ORTHO05D006411 4.6e-08 62.4 87 43.7
AL2G41770 Arabidopsis lyrata HOM05D005732 ORTHO05D007062 6.1e-08 62.0 121 32.2
AT1G79780 Arabidopsis thaliana HOM05D005732 ORTHO05D007062 6.1e-08 62.0 121 31.4
TAR633G1442 Trochodendron aralioides HOM05D005509 ORTHO05D006411 6.1e-08 62.0 87 51.7
CANSAT35G0968 Cannabis sativa HOM05D001228 ORTHO05D003869 1.0e-07 61.2 143 30.1
Rhsim04G0124100 Rhododendron simsii HOM05D001228 ORTHO05D003869 1.0e-07 61.2 181 29.3
Sp5g35990 Schrenkiella parvula HOM05D005732 ORTHO05D007062 1.0e-07 61.2 119 32.8
ATR0594G080 Amborella trichopoda HOM05D001228 ORTHO05D003869 1.3e-07 60.8 143 27.3
Solyc10g007660.3 Solanum lycopersicum HOM05D002464 ORTHO05D002530 1.3e-07 60.8 153 32.7
DCAR_028890 Daucus carota HOM05D001228 ORTHO05D003869 1.8e-07 60.5 144 30.6
DCAR_028892 Daucus carota HOM05D001228 ORTHO05D003869 1.8e-07 60.5 144 30.6
SEGI_30233 Sequoiadendron giganteum HOM05D001228 ORTHO05D003869 1.8e-07 60.5 140 28.6
Psat7g249480 Pisum sativum HOM05D001228 ORTHO05D003869 2.3e-07 60.1 140 28.6
Sopen10g003570 Solanum pennellii HOM05D002464 ORTHO05D002530 3.0e-07 59.7 153 32.7
Aa31LG4G50 Aethionema arabicum HOM05D005732 ORTHO05D007062 5.1e-07 58.9 111 35.1
vmacro08917 Vaccinium macrocarpon HOM05D001228 ORTHO05D003869 5.1e-07 58.9 143 30.1
CSS0036405 Camellia sinensis var. sinensis HOM05D001228 ORTHO05D003869 6.7e-07 58.5 143 29.4
HPP92_001132 Vanilla planifolia HOM05D001228 ORTHO05D003869 6.7e-07 58.5 144 29.9
BolC4t25264H Brassica oleracea HOM05D005509 ORTHO05D006411 8.7e-07 58.2 48 52.1
CSS0038681 Camellia sinensis var. sinensis HOM05D001228 ORTHO05D003869 8.7e-07 58.2 143 29.4
Medtr4g013270 Medicago truncatula HOM05D001228 ORTHO05D003869 1.5e-06 57.4 140 25.7
Sed0022296 Sechium edule HOM05D001228 ORTHO05D003869 1.5e-06 57.4 145 28.3
Actinidia32547 Actinidia chinensis HOM05D001228 ORTHO05D003869 1.9e-06 57.0 143 28.7
Ah.08g209980 Amaranthus hybridus HOM05D001228 ORTHO05D003869 1.9e-06 57.0 140 27.1
Aqoxy4G02713 Aquilegia oxysepala HOM05D001228 ORTHO05D003869 1.9e-06 57.0 147 30.6
Peaxi162Scf00111g00526 Petunia axillaris HOM05D002464 ORTHO05D002530 1.9e-06 57.0 161 31.1
PGR044G0099 Punica granatum HOM05D001228 ORTHO05D002377 1.9e-06 57.0 140 31.4
ECA236G4070 Erigeron canadensis HOM05D001410 ORTHO05D003969 2.5e-06 56.6 148 28.4
unitig_27.g24875 Utricularia gibba HOM05D001228 ORTHO05D003869 2.5e-06 56.6 143 28.0
Phvul.008G012200 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 3.3e-06 56.2 149 27.5
PGSC0003DMG403000524 Solanum tuberosum HOM05D001228 ORTHO05D002377 3.3e-06 56.2 141 30.5
SGA_v2.0_scaffold110G31183 Striga asiatica HOM05D001228 ORTHO05D003869 3.3e-06 56.2 143 28.7
Ca_07712_v3 Cicer arietinum L. HOM05D001228 ORTHO05D003869 4.3e-06 55.8 140 27.9
Aqoxy3G02962 Aquilegia oxysepala HOM05D001228 ORTHO05D002377 5.7e-06 55.5 143 28.7
Glyma.18G289800 Glycine max HOM05D002366 ORTHO05D002499 5.7e-06 55.5 162 28.4
Rhsim04G0124200 Rhododendron simsii HOM05D001228 ORTHO05D003869 5.7e-06 55.5 143 28.0
AUR62006291 Chenopodium quinoa HOM05D001228 ORTHO05D015828 7.4e-06 55.1 112 29.5
ECA232G3297 Erigeron canadensis HOM05D001228 ORTHO05D002377 7.4e-06 55.1 146 30.1
Lj3g0022456 Lotus japonicus HOM05D001228 ORTHO05D003869 7.4e-06 55.1 143 28.7
Oeu050609.1 Olea europaea HOM05D005732 ORTHO05D007062 7.4e-06 55.1 162 24.1
SEGI_21969 Sequoiadendron giganteum HOM05D005509 ORTHO05D006411 7.4e-06 55.1 166 26.5
Actinidia19096 Actinidia chinensis HOM05D001228 ORTHO05D002377 9.7e-06 54.7 147 29.3
Lsat_1_v5_gn_8_103660 Lactuca sativa HOM05D001228 ORTHO05D003869 9.7e-06 54.7 138 27.5
MD04G1167600 Malus domestica HOM05D001228 ORTHO05D003869 9.7e-06 54.7 143 26.6
SHI12886 Sapria himalayana HOM05D001228 ORTHO05D003869 9.7e-06 54.7 147 26.5
Thecc.05G005700 Theobroma cacao HOM05D001228 ORTHO05D003869 9.7e-06 54.7 143 28.7


User provided reference genes

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