Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO648G0024 Papaver somniferum HOM05D005628 ORTHO05D007348 1.3e-185 652.9 326 100.0
PSO648G0080 Papaver somniferum HOM05D005628 ORTHO05D007348 1.3e-185 652.9 326 100.0
PSO795G0001 Papaver somniferum HOM05D005628 ORTHO05D007348 1.3e-185 652.9 326 100.0
PSO648G0070 Papaver somniferum HOM05D005628 ORTHO05D007348 3.9e-174 614.8 308 99.7
PSO339G4729 Papaver somniferum HOM05D005628 ORTHO05D007348 2.7e-143 512.3 319 81.8
PSO170G4881 Papaver somniferum HOM05D005628 ORTHO05D007348 3.7e-108 395.6 302 69.2
PSO210G2114 Papaver somniferum HOM05D005628 ORTHO05D007348 1.5e-104 383.6 302 68.2
PSO170G2194 Papaver somniferum HOM05D005628 ORTHO05D007348 6.8e-102 374.8 296 65.2
PSO017G6535 Papaver somniferum HOM05D005628 ORTHO05D007348 2.0e-98 363.2 296 63.9
MBI05_g13277_MAGBIO Magnolia biondii HOM05D005628 ORTHO05D007348 7.5e-93 344.7 301 61.5
Aqoxy5G01095 Aquilegia oxysepala HOM05D005628 ORTHO05D007348 2.9e-92 342.8 253 68.0
QL02p012950 Quercus lobata HOM05D005628 ORTHO05D007348 2.9e-92 342.8 271 65.7
Thecc.08G051900 Theobroma cacao HOM05D005628 ORTHO05D007348 1.1e-91 340.9 298 61.4
CiPaw.07G143500 Carya illinoinensis HOM05D005628 ORTHO05D007348 1.4e-91 340.5 298 61.1
vmacro04380 Vaccinium macrocarpon HOM05D005628 ORTHO05D007348 1.4e-91 340.5 306 59.8
Cfa014012 Carpinus fangiana HOM05D005628 ORTHO05D007348 2.4e-91 339.7 267 65.9
Manes.05G142400 Manihot esculenta HOM05D005628 ORTHO05D007348 4.1e-91 339.0 260 64.2
Gohir.A05G182700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 9.2e-91 337.8 302 60.9
Gohir.D05G185700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 1.2e-90 337.4 269 64.3
Gorai.009G191100 Gossypium raimondii HOM05D005628 ORTHO05D007348 1.2e-90 337.4 269 64.3
Duzib116G0718 Durio zibethinus HOM05D005628 ORTHO05D007348 1.6e-90 337.0 303 60.7
Nn5g30848 Nelumbo nucifera HOM05D005628 ORTHO05D007348 2.7e-90 336.3 256 65.6
Actinidia29770 Actinidia chinensis HOM05D005628 ORTHO05D007348 3.5e-90 335.9 297 59.6
MSTRG.25277 Avicennia marina HOM05D005628 ORTHO05D007348 3.5e-90 335.9 296 59.5
COL.COLO4_26082 Corchorus olitorius HOM05D005628 ORTHO05D007348 1.0e-89 334.3 301 59.1
Oeu007384.1 Olea europaea HOM05D005628 ORTHO05D007348 1.0e-89 334.3 300 58.7
TWI36G0492 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 1.0e-89 334.3 276 62.7
TAR376G1006 Trochodendron aralioides HOM05D005628 ORTHO05D007348 1.0e-89 334.3 299 61.5
Hma1.2p1_1598F.1_g292970 Hydrangea macrophylla HOM05D005628 ORTHO05D007348 1.7e-89 333.6 237 67.9
Haze_22711 Corylus avellana HOM05D005628 ORTHO05D007348 2.3e-89 333.2 304 60.2
Lj4C17T5 Lonicera japonica HOM05D005628 ORTHO05D007348 3.0e-89 332.8 306 57.8
Potri.005G245700 Populus trichocarpa HOM05D005628 ORTHO05D007348 3.9e-89 332.4 299 59.5
MD08G1007500 Malus domestica HOM05D005628 ORTHO05D007348 1.5e-88 330.5 259 64.9
Atru.chr13.215 Acer truncatum HOM05D005628 ORTHO05D007348 1.9e-88 330.1 310 60.0
FAN27G2668 Fragaria x ananassa HOM05D005628 ORTHO05D007348 1.9e-88 330.1 256 65.2
MD15G1006700 Malus domestica HOM05D005628 ORTHO05D007348 1.9e-88 330.1 303 59.4
Ca_13486_v3 Cicer arietinum L. HOM05D005628 ORTHO05D007348 2.5e-88 329.7 283 59.0
Ciclev10001692m.g Citrus clementina HOM05D005628 ORTHO05D007348 2.5e-88 329.7 277 62.5
Dinv31894 Davidia involucrata HOM05D005628 ORTHO05D007348 2.5e-88 329.7 262 64.5
Prupe.1G359300 Prunus persica HOM05D005628 ORTHO05D007348 3.3e-88 329.3 246 67.1
Rhsim07G0251100 Rhododendron simsii HOM05D005628 ORTHO05D007348 4.3e-88 328.9 298 58.7
Cc10_g01120 Coffea canephora HOM05D005628 ORTHO05D007348 7.3e-88 328.2 304 57.9
FAN20G0939 Fragaria x ananassa HOM05D005628 ORTHO05D007348 7.3e-88 328.2 256 64.8
Sabra05G0189800 Salix brachista HOM05D005628 ORTHO05D007348 9.5e-88 327.8 302 59.3
FAN15G2092 Fragaria x ananassa HOM05D005628 ORTHO05D007348 2.1e-87 326.6 256 64.5
Sc15g0004660 Simmondsia chinensis HOM05D005628 ORTHO05D007348 2.8e-87 326.2 278 60.4
FvH4_2g37930 Fragaria vesca HOM05D005628 ORTHO05D007348 4.7e-87 325.5 296 60.1
Cpa.g.sc26.263 Carica papaya HOM05D005628 ORTHO05D007348 8.1e-87 324.7 294 59.5
Medtr1g026125 Medicago truncatula HOM05D005628 ORTHO05D007348 8.1e-87 324.7 254 64.6
PGR031G3420 Punica granatum HOM05D005628 ORTHO05D007348 1.1e-86 324.3 307 58.3
DCAR_009514 Daucus carota HOM05D005628 ORTHO05D007348 1.8e-86 323.6 262 64.1
RcHm_v2.0_Chr6g0303681 Rosa chinensis HOM05D005628 ORTHO05D007348 3.1e-86 322.8 265 61.5
TWI56G0240 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 3.1e-86 322.8 300 57.7
Thhalv10018920m.g Eutrema salsugineum HOM05D005628 ORTHO05D007348 4.0e-86 322.4 248 66.1
Lalb_Chr03g0033571 Lupinus albus HOM05D005628 ORTHO05D007348 8.9e-86 321.2 302 58.3
arahy.Tifrunner.gnm1.ann1.KUZ5B2 Arachis hypogaea HOM05D005628 ORTHO05D007348 1.2e-85 320.9 304 57.9
arahy.Tifrunner.gnm1.ann1.W1N14J Arachis hypogaea HOM05D005628 ORTHO05D007348 2.0e-85 320.1 304 57.9
Psat6g000840 Pisum sativum HOM05D005628 ORTHO05D007348 2.6e-85 319.7 276 59.1
Carub.0002s2297 Capsella rubella HOM05D005628 ORTHO05D007348 4.4e-85 318.9 243 66.3
AL2G36120 Arabidopsis lyrata HOM05D005628 ORTHO05D007348 7.6e-85 318.2 248 65.7
BraA07t31693Z Brassica rapa HOM05D005628 ORTHO05D007348 9.9e-85 317.8 256 64.1
Lj5g0010043 Lotus japonicus HOM05D005628 ORTHO05D007348 9.9e-85 317.8 262 60.7
A07p41640 Brassica napus HOM05D005628 ORTHO05D007348 1.3e-84 317.4 230 68.3
Sed0003076 Sechium edule HOM05D005628 ORTHO05D007348 1.7e-84 317.0 297 56.2
BolC6t40041H Brassica oleracea HOM05D005628 ORTHO05D007348 2.2e-84 316.6 231 67.5
Migut.C00901 Erythranthe guttata HOM05D005628 ORTHO05D007348 2.2e-84 316.6 236 65.7
Solyc04g081970.3 Solanum lycopersicum HOM05D005628 ORTHO05D007348 2.2e-84 316.6 266 60.2
Sopen04g035620 Solanum pennellii HOM05D005628 ORTHO05D007348 2.2e-84 316.6 266 60.2
CANSAT64G0481 Cannabis sativa HOM05D005628 ORTHO05D007348 4.9e-84 315.5 268 60.4
C06p50020 Brassica napus HOM05D005628 ORTHO05D007348 6.4e-84 315.1 231 67.1
PGSC0003DMG400009956 Solanum tuberosum HOM05D005628 ORTHO05D007348 6.4e-84 315.1 266 59.8
Sp5g31200 Schrenkiella parvula HOM05D005628 ORTHO05D007348 1.1e-83 314.3 257 63.0
EL10Ac1g02081 Beta vulgaris HOM05D005628 ORTHO05D007348 1.4e-83 313.9 237 66.2
CSS0034642 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 1.4e-83 313.9 286 58.0
ClCG08G014020 Citrullus lanatus HOM05D005628 ORTHO05D007348 4.1e-83 312.4 295 57.6
AT1G76080 Arabidopsis thaliana HOM05D005628 ORTHO05D007348 1.2e-82 310.8 302 56.6
Lsat_1_v5_gn_0_661 Lactuca sativa HOM05D005628 ORTHO05D007348 1.6e-82 310.5 310 55.8
Hund01723 Selenicereus undatus HOM05D005628 ORTHO05D007348 1.6e-82 310.5 297 56.9
Aa31LG4G6200 Aethionema arabicum HOM05D005628 ORTHO05D007348 2.7e-82 309.7 240 64.2
CAN.G311.75 Capsicum annuum HOM05D005628 ORTHO05D007348 2.7e-82 309.7 260 61.2
Glyma.14G222500 Glycine max HOM05D005628 ORTHO05D007348 2.7e-82 309.7 297 55.6
CARHR069620 Cardamine hirsuta HOM05D005628 ORTHO05D007348 6.0e-82 308.5 262 62.2
BcaC08g47300 Brassica carinata HOM05D005628 ORTHO05D007348 7.8e-82 308.1 256 62.9
HanXRQChr05g0146641 Helianthus annuus HOM05D005628 ORTHO05D007348 1.0e-81 307.8 286 58.7
CsaV3_2G024440 Cucumis sativus L. HOM05D005628 ORTHO05D007348 5.1e-81 305.4 298 56.4
SGA_v2.0_scaffold145G36102 Striga asiatica HOM05D005628 ORTHO05D007348 5.1e-81 305.4 225 66.7
THA.LOC104811445 Tarenaya hassleriana HOM05D005628 ORTHO05D007348 6.6e-81 305.1 313 54.3
AUR62036715 Chenopodium quinoa HOM05D005628 ORTHO05D007348 8.7e-81 304.7 265 60.0
ECA232G2943 Erigeron canadensis HOM05D005628 ORTHO05D007348 8.7e-81 304.7 237 64.6
TPR.G26414 Trifolium pratense HOM05D005628 ORTHO05D007348 7.3e-80 301.6 266 59.8
CiPaw.08G069300 Carya illinoinensis HOM05D005628 ORTHO05D007348 3.6e-79 299.3 278 59.4
MELO3C011340.2 Cucumis melo HOM05D005628 ORTHO05D007348 3.6e-79 299.3 297 56.6
Eucgr.F03707 Eucalyptus grandis HOM05D005628 ORTHO05D007348 4.7e-79 298.9 294 54.4
BcaC08g47301 Brassica carinata HOM05D005628 ORTHO05D007348 2.0e-77 293.5 211 68.7
SEGI_09368 Sequoiadendron giganteum HOM05D005628 ORTHO05D007348 2.0e-77 293.5 236 61.4
Phvul.001G002100 Phaseolus vulgaris HOM05D005628 ORTHO05D007348 3.4e-77 292.7 302 54.0
unitig_749.g13905 Utricularia gibba HOM05D005628 ORTHO05D007348 1.7e-76 290.4 227 62.6
HPP92_014531 Vanilla planifolia HOM05D005628 ORTHO05D007348 3.8e-76 289.3 283 55.1
BcaC08g47294 Brassica carinata HOM05D005628 ORTHO05D007348 1.1e-75 287.7 231 63.2
VMungo0647G1170 Vigna mungo HOM05D005628 ORTHO05D007348 9.3e-75 284.6 309 54.0
Os07g0476900 Oryza sativa ssp. japonica HOM05D005628 ORTHO05D007348 1.2e-74 284.3 231 62.3
Nitab4.5_0003030g0070 Nicotiana tabacum HOM05D005628 ORTHO05D007348 5.6e-72 275.4 244 58.2
Zm00001eb319950 Zea mays HOM05D005628 ORTHO05D007348 1.3e-71 274.2 302 52.0
ATR0661G503 Amborella trichopoda HOM05D005628 ORTHO05D007348 1.6e-71 273.9 228 60.5
AUR62013879 Chenopodium quinoa HOM05D005628 ORTHO05D007348 1.6e-71 273.9 199 66.8
Actinidia37955 Actinidia chinensis HOM05D005628 ORTHO05D007348 6.2e-71 271.9 230 63.0
CDE02G2619 Ceratophyllum demersum HOM05D005628 ORTHO05D007348 3.9e-65 252.7 235 57.9
Mapoly0024s0029 Marchantia polymorpha HOM05D005628 ORTHO05D007348 1.5e-64 250.8 234 52.6
Lj9P400T45 Lonicera japonica HOM05D005628 ORTHO05D007348 2.5e-64 250.0 272 48.5
Peaxi162Scf00174g00813 Petunia axillaris HOM05D005628 ORTHO05D007348 1.4e-62 244.2 263 51.7
Pp3c13_21520 Physcomitrium patens HOM05D005628 ORTHO05D007348 2.2e-60 236.9 238 50.0
SMO356G0420 Selaginella moellendorffii HOM05D005628 ORTHO05D007348 2.5e-56 223.4 227 51.5
CBR_g26413 Chara braunii HOM05D005628 ORTHO05D007348 4.3e-56 222.6 242 47.1
C02p33470 Brassica napus HOM05D005628 ORTHO05D007348 9.3e-51 204.9 161 64.6
BolC2t09357H Brassica oleracea HOM05D005628 ORTHO05D007348 1.2e-50 204.5 144 69.4
Ah.00g000640 Amaranthus hybridus HOM05D005628 ORTHO05D007348 1.8e-49 200.7 143 68.5
BcaC03g15644 Brassica carinata HOM05D005628 ORTHO05D007348 5.7e-48 195.7 135 69.6
Migut.B00054 Erythranthe guttata HOM05D005628 ORTHO05D007348 3.8e-44 183.0 298 38.3
SGA_v2.0_scaffold58G20340 Striga asiatica HOM05D005628 ORTHO05D007348 7.2e-43 178.7 286 37.8
A02p20420 Brassica napus HOM05D005628 ORTHO05D007348 5.1e-41 172.6 130 62.3
Prupe.6G111600 Prunus persica HOM05D005628 ORTHO05D007348 5.0e-36 156.0 136 56.6
Potri.002G016401 Populus trichocarpa HOM05D005628 ORTHO05D007348 5.3e-22 109.4 82 63.4
Cre14.g624201 Chlamydomonas reinhardtii HOM05D005628 ORTHO05D007348 7.2e-19 99.0 263 27.8
MCO15G282 Micromonas commoda HOM05D005628 ORTHO05D007348 9.7e-16 88.6 274 24.8
BraA02t07074Z Brassica rapa HOM05D005628 ORTHO05D007348 3.7e-15 86.7 57 71.9
PRCOL_00004342 Prasinoderma coloniale HOM05D005628 ORTHO05D007348 1.0e-12 78.6 251 25.9
CSS0009264 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 1.1e-11 75.1 45 62.2
SEGI_16012 Sequoiadendron giganteum HOM05D005628 ORTHO05D000288 1.5e-08 64.7 129 32.6
PRCOL_00003728 Prasinoderma coloniale HOM05D005628 ORTHO05D005467 3.4e-08 63.5 110 34.5
Lsat_1_v5_gn_5_99920 Lactuca sativa HOM05D000247 ORTHO05D000288 5.7e-08 62.8 106 34.9
Cc11_g13630 Coffea canephora HOM05D000247 ORTHO05D000288 7.5e-08 62.4 116 34.5
GSVIVG01023970001 Vitis vinifera HOM05D000151 ORTHO05D000074 1.3e-07 61.6 40 70.0
PRCOL_00006532 Prasinoderma coloniale HOM05D027507 ORTHO05D030206 2.2e-07 60.8 108 31.5
Sc04g0008510 Simmondsia chinensis HOM05D000247 ORTHO05D000288 2.8e-07 60.5 110 31.8
DCAR_022451 Daucus carota HOM05D000247 ORTHO05D000288 3.7e-07 60.1 112 25.9
Pp3c15_21760 Physcomitrium patens HOM05D001256 ORTHO05D000288 3.7e-07 60.1 112 33.9
Pp3c9_20570 Physcomitrium patens HOM05D001256 ORTHO05D000288 1.1e-06 58.5 113 33.6
AT1G59730 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 1.8e-06 57.8 110 30.9
Carub.0002s0563 Capsella rubella HOM05D000247 ORTHO05D000288 1.8e-06 57.8 109 32.1
Sp1g17570 Schrenkiella parvula HOM05D000247 ORTHO05D000288 1.8e-06 57.8 101 30.7
BolC4t24180H Brassica oleracea HOM05D000247 ORTHO05D000288 2.4e-06 57.4 129 31.0
Lsat_1_v5_gn_3_75181 Lactuca sativa HOM05D000247 ORTHO05D000288 3.1e-06 57.0 93 34.4
AL2G17160 Arabidopsis lyrata HOM05D000247 ORTHO05D000288 4.1e-06 56.6 110 29.1
BolC5t30524H Brassica oleracea HOM05D000247 ORTHO05D000288 5.4e-06 56.2 96 31.2
CARHR053420 Cardamine hirsuta HOM05D000247 ORTHO05D000288 5.4e-06 56.2 109 32.1
VMungo1309G0246 Vigna mungo HOM05D000247 ORTHO05D000288 5.4e-06 56.2 117 28.2
Zm00001eb061180 Zea mays HOM05D000247 ORTHO05D000288 5.4e-06 56.2 111 28.8
Thhalv10009025m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 7.0e-06 55.8 96 31.2
CSS0031247 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 9.1e-06 55.5 109 28.4
Os07g0190800 Oryza sativa ssp. japonica HOM05D000247 ORTHO05D000288 9.1e-06 55.5 121 28.9


User provided reference genes

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