Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO591G0496 Papaver somniferum HOM05D001960 ORTHO05D007725 5.0e-252 874.0 456 100.0
PSO832G0234 Papaver somniferum HOM05D001960 ORTHO05D007725 6.4e-231 803.9 493 87.0
TAR371G1229 Trochodendron aralioides HOM05D001960 ORTHO05D007725 8.7e-188 660.6 442 74.2
Nn3g17123 Nelumbo nucifera HOM05D001960 ORTHO05D007725 9.9e-184 647.1 442 72.6
Prupe.3G272300 Prunus persica HOM05D001960 ORTHO05D007725 1.3e-180 636.7 473 68.7
Gohir.D04G050500 Gossypium hirsutum HOM05D001960 ORTHO05D007725 6.7e-180 634.4 442 71.3
CiPaw.03G030400 Carya illinoinensis HOM05D001960 ORTHO05D007725 1.5e-179 633.3 443 70.9
Gorai.012G056000 Gossypium raimondii HOM05D001960 ORTHO05D007725 1.9e-179 632.9 442 71.0
vmacro05739 Vaccinium macrocarpon HOM05D001960 ORTHO05D007725 3.3e-179 632.1 419 74.9
GSVIVG01032604001 Vitis vinifera HOM05D001960 ORTHO05D007725 3.3e-179 632.1 427 73.8
CSS0036057 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 2.8e-178 629.0 493 66.5
Nitab4.5_0000564g0320 Nicotiana tabacum HOM05D001960 ORTHO05D007725 4.8e-178 628.2 469 68.0
QL02p080348 Quercus lobata HOM05D001960 ORTHO05D007725 6.2e-178 627.9 498 66.7
Atru.chr8.1915 Acer truncatum HOM05D001960 ORTHO05D007725 2.4e-177 625.9 440 70.5
CANSAT64G2224 Cannabis sativa HOM05D001960 ORTHO05D007725 6.9e-177 624.4 443 70.4
Thecc.04G074100 Theobroma cacao HOM05D001960 ORTHO05D007725 6.9e-177 624.4 440 69.5
Sabra17G0069200 Salix brachista HOM05D001960 ORTHO05D007725 9.0e-177 624.0 422 72.7
AT3G28700 Arabidopsis thaliana HOM05D001960 ORTHO05D007725 1.2e-176 623.6 440 69.8
MSTRG.15488 Avicennia marina HOM05D001960 ORTHO05D007725 2.6e-176 622.5 482 68.7
Carub.0005s0723 Capsella rubella HOM05D001960 ORTHO05D007725 2.6e-176 622.5 493 64.9
RhsimUnG0055000 Rhododendron simsii HOM05D001960 ORTHO05D007725 2.6e-176 622.5 428 72.4
AL5G18340 Arabidopsis lyrata HOM05D001960 ORTHO05D007725 3.4e-176 622.1 493 65.5
Nitab4.5_0002265g0270 Nicotiana tabacum HOM05D001960 ORTHO05D007725 3.4e-176 622.1 469 67.6
THA.LOC104823928 Tarenaya hassleriana HOM05D001960 ORTHO05D007725 3.4e-176 622.1 495 65.5
MD17G1046800 Malus domestica HOM05D001960 ORTHO05D007725 4.5e-176 621.7 443 69.8
Solyc02g087640.3 Solanum lycopersicum HOM05D001960 ORTHO05D007725 4.5e-176 621.7 435 70.3
MD09G1045900 Malus domestica HOM05D001960 ORTHO05D007725 5.8e-176 621.3 443 70.0
RcHm_v2.0_Chr2g0169211 Rosa chinensis HOM05D001960 ORTHO05D007725 5.8e-176 621.3 425 72.2
Sopen02g032390 Solanum pennellii HOM05D001960 ORTHO05D007725 5.8e-176 621.3 469 66.7
FvH4_6g49351 Fragaria vesca HOM05D001960 ORTHO05D007725 1.3e-175 620.2 425 72.2
Actinidia06068 Actinidia chinensis HOM05D001960 ORTHO05D007725 1.7e-175 619.8 494 65.0
Os01g0588800 Oryza sativa ssp. japonica HOM05D001960 ORTHO05D007725 1.7e-175 619.8 426 72.5
arahy.Tifrunner.gnm1.ann1.9ZMQ3R Arachis hypogaea HOM05D001960 ORTHO05D007725 2.2e-175 619.4 494 64.6
CARHR286600 Cardamine hirsuta HOM05D001960 ORTHO05D007725 3.8e-175 618.6 494 65.0
Medtr4g075200 Medicago truncatula HOM05D001960 ORTHO05D007725 3.8e-175 618.6 425 72.5
TWI34G1416 Tripterygium wilfordii HOM05D001960 ORTHO05D007725 4.9e-175 618.2 451 67.8
Hma1.2p1_1232F.1_g268880 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 6.5e-175 617.8 429 70.6
Cfa007507 Carpinus fangiana HOM05D001960 ORTHO05D007725 8.4e-175 617.5 435 70.6
Thhalv10004119m.g Eutrema salsugineum HOM05D001960 ORTHO05D007725 1.1e-174 617.1 493 64.9
PGSC0003DMG400001411 Solanum tuberosum HOM05D001960 ORTHO05D007725 1.9e-174 616.3 435 70.1
SGA_v2.0_scaffold30G12523 Striga asiatica HOM05D001960 ORTHO05D007725 1.9e-174 616.3 440 69.8
arahy.Tifrunner.gnm1.ann1.57V2RC Arachis hypogaea HOM05D001960 ORTHO05D007725 2.5e-174 615.9 439 69.5
Cc01_g00810 Coffea canephora HOM05D001960 ORTHO05D007725 2.5e-174 615.9 451 68.5
Eucgr.J02136 Eucalyptus grandis HOM05D001960 ORTHO05D007725 3.2e-174 615.5 502 64.1
FAN05G4054 Fragaria x ananassa HOM05D001960 ORTHO05D007725 3.2e-174 615.5 431 71.5
Potri.017G077000 Populus trichocarpa HOM05D001960 ORTHO05D007725 4.2e-174 615.1 425 70.8
Manes.17G020800 Manihot esculenta HOM05D001960 ORTHO05D007725 5.5e-174 614.8 497 64.2
Aqoxy3G03264 Aquilegia oxysepala HOM05D001960 ORTHO05D007725 1.2e-173 613.6 401 75.6
BcaC06g33634 Brassica carinata HOM05D001960 ORTHO05D007725 2.7e-173 612.5 493 63.7
Psat7g177520 Pisum sativum HOM05D001960 ORTHO05D007725 2.7e-173 612.5 424 71.2
C07p37650 Brassica napus HOM05D001960 ORTHO05D004348 3.5e-173 612.1 492 63.8
BolC7t44281H Brassica oleracea HOM05D001960 ORTHO05D007725 3.5e-173 612.1 492 63.8
CAN.G206.108 Capsicum annuum HOM05D001960 ORTHO05D007725 4.6e-173 611.7 477 64.8
CsaV3_5G037870 Cucumis sativus L. HOM05D001960 ORTHO05D007725 7.9e-173 610.9 420 71.0
Lj3g0011182 Lotus japonicus HOM05D001960 ORTHO05D007725 7.9e-173 610.9 426 70.4
Zm00001eb357440 Zea mays HOM05D001960 ORTHO05D007725 7.9e-173 610.9 405 72.8
TPR.G17186 Trifolium pratense HOM05D001960 ORTHO05D007725 1.3e-172 610.1 425 71.3
MELO3C021973.2 Cucumis melo HOM05D001960 ORTHO05D007725 3.0e-172 609.0 420 70.7
Ciclev10011611m.g Citrus clementina HOM05D001960 ORTHO05D007725 3.9e-172 608.6 493 62.7
BcaC06g30901 Brassica carinata HOM05D001960 ORTHO05D007725 5.1e-172 608.2 497 63.0
Lsat_1_v5_gn_4_179920 Lactuca sativa HOM05D001960 ORTHO05D007725 5.1e-172 608.2 438 68.7
A06p40400 Brassica napus HOM05D001960 ORTHO05D004348 6.7e-172 607.8 492 63.6
BraA06t26958Z Brassica rapa HOM05D001960 ORTHO05D004348 6.7e-172 607.8 492 63.6
MBI15_g37231_MAGBIO Magnolia biondii HOM05D001960 ORTHO05D007725 8.7e-172 607.4 417 71.9
DCAR_006720 Daucus carota HOM05D001960 ORTHO05D007725 3.3e-171 605.5 464 65.7
HanXRQChr09g0265611 Helianthus annuus HOM05D001960 ORTHO05D007725 3.3e-171 605.5 438 68.0
Phvul.011G027550 Phaseolus vulgaris HOM05D001960 ORTHO05D007725 3.3e-171 605.5 423 70.4
PGR083G0481 Punica granatum HOM05D001960 ORTHO05D007725 4.3e-171 605.1 428 70.6
Glyma.11G099200 Glycine max HOM05D001960 ORTHO05D007725 5.7e-171 604.7 423 70.7
Sp2g17340 Schrenkiella parvula HOM05D001960 ORTHO05D007725 5.7e-171 604.7 500 63.0
AUR62031644 Chenopodium quinoa HOM05D001960 ORTHO05D007725 9.7e-171 604.0 423 70.2
SalBow1G8169 Salvia bowleyana HOM05D001960 ORTHO05D007725 9.7e-171 604.0 479 64.5
Migut.K01335 Erythranthe guttata HOM05D001960 ORTHO05D007725 3.7e-170 602.1 495 63.2
Lalb_Chr19g0139461 Lupinus albus HOM05D001960 ORTHO05D007725 1.4e-169 600.1 424 69.6
Haze_14586 Corylus avellana HOM05D001960 ORTHO05D007725 3.1e-169 599.0 481 64.2
Hund13245 Selenicereus undatus HOM05D001960 ORTHO05D007725 3.1e-169 599.0 428 69.9
VMungo1127G2029 Vigna mungo HOM05D001960 ORTHO05D007725 4.1e-169 598.6 442 68.3
EL10Ac2g03435 Beta vulgaris HOM05D001960 ORTHO05D007725 1.5e-168 596.7 469 65.7
Aa31LG2G4510 Aethionema arabicum HOM05D001960 ORTHO05D007725 1.0e-167 594.0 432 68.8
AUR62038879 Chenopodium quinoa HOM05D001960 ORTHO05D007725 1.0e-167 594.0 452 66.4
FAN14G4702 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.0e-167 594.0 403 72.2
Oeu060916.1 Olea europaea HOM05D001960 ORTHO05D007725 2.9e-167 592.4 442 67.0
Ca_20945_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 1.1e-166 590.5 425 70.1
ClCG09G018410 Citrullus lanatus HOM05D001960 ORTHO05D007725 4.2e-166 588.6 466 64.6
Ca_19010_v3 Cicer arietinum L. HOM05D001960 ORTHO05D007725 9.3e-166 587.4 424 69.8
Sed0013706 Sechium edule HOM05D001960 ORTHO05D007725 9.3e-166 587.4 440 66.4
Sc10g0003830 Simmondsia chinensis HOM05D001960 ORTHO05D007725 2.1e-165 586.3 424 68.9
Sed0024340 Sechium edule HOM05D001960 ORTHO05D007725 2.3e-164 582.8 425 67.5
Lj7A401T79 Lonicera japonica HOM05D001960 ORTHO05D007725 1.5e-163 580.1 444 66.0
Oeu033340.1 Olea europaea HOM05D001960 ORTHO05D007725 5.7e-163 578.2 423 68.3
unitig_747.g21836 Utricularia gibba HOM05D001960 ORTHO05D007725 2.2e-162 576.2 373 72.1
ATR1120G150 Amborella trichopoda HOM05D001960 ORTHO05D007725 2.4e-161 572.8 497 60.8
HPP92_022934 Vanilla planifolia HOM05D001960 ORTHO05D007725 1.7e-159 566.6 453 62.7
FAN02G2179 Fragaria x ananassa HOM05D001960 ORTHO05D007725 1.8e-156 556.6 483 60.9
Gohir.A05G364200 Gossypium hirsutum HOM05D001960 ORTHO05D007725 4.1e-153 545.4 405 66.7
CSS0006137 Camellia sinensis var. sinensis HOM05D001960 ORTHO05D007725 1.2e-152 543.9 377 71.6
HPP92_022922 Vanilla planifolia HOM05D001960 ORTHO05D007725 8.5e-151 537.7 410 64.9
ECA232G3528 Erigeron canadensis HOM05D001960 ORTHO05D007725 3.7e-146 522.3 377 67.9
C09p03940 Brassica napus HOM05D001960 ORTHO05D007725 2.4e-145 519.6 420 62.1
SEGI_03019 Sequoiadendron giganteum HOM05D001960 ORTHO05D007725 4.2e-142 508.8 437 57.2
Ah.12g065370 Amaranthus hybridus HOM05D001960 ORTHO05D007725 6.1e-141 505.0 393 63.9
BolC9t53325H Brassica oleracea HOM05D001960 ORTHO05D007725 6.1e-141 505.0 435 60.0
COL.COLO4_25201 Corchorus olitorius HOM05D001960 ORTHO05D007725 1.8e-140 503.4 442 61.3
ECA232G0063 Erigeron canadensis HOM05D001960 ORTHO05D007725 1.2e-139 500.7 346 69.9
Dinv33716 Davidia involucrata HOM05D001960 ORTHO05D007725 7.5e-139 498.0 303 76.9
BcaC04g23865 Brassica carinata HOM05D001960 ORTHO05D004348 6.5e-135 485.0 397 62.7
Peaxi162Scf00129g00533 Petunia axillaris HOM05D001960 ORTHO05D007725 1.0e-132 477.6 390 62.1
Pp3c8_16780 Physcomitrium patens HOM05D001960 ORTHO05D007725 8.3e-130 468.0 442 52.3
CDE05G2812 Ceratophyllum demersum HOM05D001960 ORTHO05D007725 3.1e-129 466.1 380 64.7
Mapoly0027s0012 Marchantia polymorpha HOM05D001960 ORTHO05D007725 8.3e-122 441.4 447 51.7
Dinv34989 Davidia involucrata HOM05D001960 ORTHO05D007725 5.9e-120 435.3 285 73.7
C04p40510 Brassica napus HOM05D001960 ORTHO05D007725 1.3e-119 434.1 296 70.6
BolC4t25631H Brassica oleracea HOM05D001960 ORTHO05D007725 1.3e-119 434.1 296 70.6
Hma1.2p1_1232F.1_g268890 Hydrangea macrophylla HOM05D001960 ORTHO05D007725 8.6e-119 431.4 256 78.1
AagrBONN_evm.TU.Sc2ySwM_368.2217 Anthoceros agrestis HOM05D001960 ORTHO05D007725 4.4e-115 419.1 474 47.3
C05p44890 Brassica napus HOM05D001960 ORTHO05D007725 1.2e-109 401.0 302 65.2
C08p31240 Brassica napus HOM05D001960 ORTHO05D007725 2.4e-105 386.7 284 66.5
BcaC02g09250 Brassica carinata HOM05D001960 ORTHO05D007725 5.6e-102 375.6 263 70.0
BolC8t50105H Brassica oleracea HOM05D001960 ORTHO05D007725 5.6e-102 375.6 269 69.1
C08p24890 Brassica napus HOM05D001960 ORTHO05D007725 5.2e-100 369.0 293 64.2
SMO200G0063 Selaginella moellendorffii HOM05D001960 ORTHO05D007725 3.5e-88 329.7 391 46.3
Ca_19017_v3 Cicer arietinum L. HOM05D000077 ORTHO05D002511 1.6e-85 320.9 311 55.9
CBR_g40650 Chara braunii HOM05D001960 ORTHO05D007725 1.8e-84 317.4 296 52.0
HPP92_022944 Vanilla planifolia HOM05D001960 ORTHO05D007725 9.9e-83 311.6 208 71.2
MCO09G443 Micromonas commoda HOM05D001960 ORTHO05D007725 1.0e-63 248.4 384 38.3
SHI22231 Sapria himalayana HOM05D001960 ORTHO05D007725 2.6e-59 233.8 223 54.3
Cre02.g096400 Chlamydomonas reinhardtii HOM05D001960 ORTHO05D007725 7.9e-48 195.7 566 28.1
Dinv34987 Davidia involucrata HOM05D001960 ORTHO05D007725 3.1e-44 183.7 110 77.3
Migut.K01334 Erythranthe guttata HOM05D001960 ORTHO05D007725 1.5e-43 181.4 246 47.2
Hma1.2p1_1232F.1_g268870 Hydrangea macrophylla HOM05D001960 ORTHO05D014729 3.3e-38 163.7 89 87.6
Cfa026330 Carpinus fangiana HOM05D001960 ORTHO05D007725 4.7e-32 143.3 465 28.2
Dinv06509 Davidia involucrata HOM05D001960 ORTHO05D014729 1.0e-31 142.1 82 84.1
AUR62031616 Chenopodium quinoa HOM05D000372 ORTHO05D002769 7.4e-30 136.0 111 59.5
A05p31150 Brassica napus HOM05D001960 ORTHO05D033473 1.2e-22 112.1 74 74.3
CDE05G0334 Ceratophyllum demersum HOM05D000115 ORTHO05D000645 1.1e-20 105.5 60 75.0
A01p26160 Brassica napus HOM05D001960 ORTHO05D014930 5.0e-18 96.7 68 66.2
BraA02t06070Z Brassica rapa HOM05D001960 ORTHO05D014930 5.0e-18 96.7 68 66.2
BolC3t20150H Brassica oleracea HOM05D001960 ORTHO05D014930 1.5e-17 95.1 68 63.2
C04p14730 Brassica napus HOM05D001960 ORTHO05D014930 1.9e-17 94.7 68 63.2
BraA05t21956Z Brassica rapa HOM05D001960 ORTHO05D042754 1.9e-17 94.7 73 63.0
BcaC02g11495 Brassica carinata HOM05D001960 ORTHO05D014930 2.5e-17 94.4 67 64.2
A05p31140 Brassica napus HOM05D001960 ORTHO05D042754 3.2e-17 94.0 68 64.7
C07p16020 Brassica napus HOM05D001960 ORTHO05D014930 5.5e-17 93.2 69 62.3
BolC5t33816H Brassica oleracea HOM05D001960 ORTHO05D014930 9.4e-17 92.4 68 61.8
HPP92_017638 Vanilla planifolia HOM05D003031 ORTHO05D003371 9.4e-17 92.4 51 76.5
BcaC05g28941 Brassica carinata HOM05D001960 ORTHO05D014930 1.6e-16 91.7 67 62.7
C07p16060 Brassica napus HOM05D001960 ORTHO05D021151 1.6e-16 91.7 68 61.8
Medtr5g075800 Medicago truncatula HOM05D001960 ORTHO05D258834 7.0e-12 76.3 85 50.6
Actinidia23575 Actinidia chinensis HOM05D001960 ORTHO05D007725 3.5e-11 73.9 71 53.5
Actinidia27488 Actinidia chinensis HOM05D001960 ORTHO05D058277 5.5e-09 66.6 37 83.8
Dinv25076 Davidia involucrata HOM05D001960 ORTHO05D033473 2.1e-08 64.7 41 75.6
HPP92_003669 Vanilla planifolia HOM05D001960 ORTHO05D007725 5.7e-06 56.6 31 80.6


User provided reference genes

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