Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 8.5e-268 926.4 457 100.0
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 8.5e-260 899.8 456 96.1
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 4.4e-147 525.4 509 60.5
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 5.5e-142 508.4 486 60.7
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.2e-141 507.3 503 59.6
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 5.9e-136 488.4 502 58.2
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 7.2e-134 481.5 502 54.6
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 2.9e-127 459.5 494 54.5
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 2.5e-126 456.4 484 53.7
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 9.5e-126 454.5 490 53.5
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 3.6e-125 452.6 497 52.7
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 6.8e-124 448.4 497 52.5
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 2.0e-123 446.8 495 53.3
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 8.3e-122 441.4 489 51.9
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.4e-121 440.7 481 53.6
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 9.2e-121 438.0 498 52.8
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 2.0e-120 436.8 488 51.8
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 2.0e-120 436.8 487 51.5
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 3.5e-120 436.0 501 52.5
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 2.3e-119 433.3 478 52.9
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 5.0e-119 432.2 496 51.0
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 5.6e-118 428.7 494 53.2
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 2.1e-117 426.8 478 52.9
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 6.2e-117 425.2 499 50.3
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 6.2e-117 425.2 495 49.3
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 1.1e-116 424.5 496 52.0
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 1.4e-116 424.1 486 50.2
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.4e-116 424.1 486 50.2
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.4e-116 424.1 486 50.2
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.8e-116 423.7 482 50.8
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.8e-116 421.8 486 50.0
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 6.8e-116 421.8 482 51.9
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 2.6e-115 419.9 497 50.7
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 4.4e-115 419.1 497 51.3
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 5.8e-115 418.7 487 50.9
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.7e-114 417.2 477 52.0
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.2e-114 416.8 458 51.7
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.4e-114 415.2 486 49.6
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 1.9e-113 413.7 498 50.0
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 4.1e-113 412.5 449 52.3
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 9.2e-113 411.4 469 51.8
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 1.6e-112 410.6 498 50.4
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.0e-111 407.9 496 50.2
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 1.0e-111 407.9 453 53.4
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.0e-111 407.9 436 53.4
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 5.0e-111 405.6 495 49.7
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 1.1e-110 404.4 489 49.5
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.4e-108 397.5 501 51.5
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 8.9e-108 394.8 465 50.3
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.5e-102 377.5 509 48.5
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 7.3e-102 375.2 488 49.0
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 4.7e-101 372.5 427 51.1
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 3.1e-100 369.8 457 50.3
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 4.4e-99 365.9 471 50.7
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 6.4e-98 362.1 473 49.0
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.4e-97 360.1 400 53.8
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 5.4e-97 359.0 400 53.8
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 1.3e-95 354.4 450 49.1
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 1.3e-95 354.4 478 47.5
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 3.9e-95 352.8 524 44.1
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 1.5e-94 350.9 390 52.6
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.6e-93 347.4 386 51.0
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 8.1e-93 345.1 458 48.7
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 8.1e-93 345.1 464 45.7
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.4e-92 344.4 374 54.0
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.8e-92 344.0 385 50.6
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 3.1e-92 343.2 437 48.3
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 1.2e-91 341.3 574 41.5
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 2.0e-91 340.5 399 50.4
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 3.4e-91 339.7 383 50.4
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 5.8e-91 339.0 445 47.2
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 9.9e-91 338.2 477 43.8
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 9.9e-91 338.2 451 46.8
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 2.9e-90 336.7 483 43.5
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 3.8e-90 336.3 469 44.3
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 2.7e-88 330.1 497 42.5
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 6.0e-88 328.9 419 50.8
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 6.0e-88 328.9 394 49.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 3.0e-87 326.6 475 45.1
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.1e-86 324.7 424 47.4
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 4.3e-86 322.8 390 50.3
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 2.4e-84 317.0 393 47.8
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.2e-83 314.7 406 48.5
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 2.0e-83 313.9 380 48.9
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 1.7e-82 310.8 485 42.7
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 2.2e-82 310.5 377 49.6
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 6.4e-82 308.9 458 44.1
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 8.4e-82 308.5 484 43.0
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 7.1e-81 305.4 379 48.5
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.6e-80 304.3 432 46.1
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 4.6e-80 302.8 387 49.1
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 7.9e-80 302.0 442 44.1
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.0e-79 301.6 385 48.3
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 3.9e-79 299.7 375 49.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 1.5e-78 297.7 382 48.2
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.5e-78 297.7 377 49.3
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.9e-78 297.4 432 44.2
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 2.1e-77 293.9 386 48.2
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 3.7e-77 293.1 387 46.8
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 3.7e-77 293.1 378 48.7
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 3.7e-77 293.1 387 49.1
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 6.2e-77 292.4 365 49.6
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 1.5e-75 287.7 409 45.5
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 2.0e-75 287.3 473 43.6
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 9.9e-75 285.0 372 47.0
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 3.2e-73 280.0 310 53.5
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 1.6e-72 277.7 386 47.2
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 3.5e-72 276.6 406 42.9
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 1.6e-69 267.7 414 47.1
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.5e-67 261.2 383 46.5
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 2.2e-66 257.3 318 49.1
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 2.1e-64 250.8 302 49.7
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 3.9e-63 246.5 381 44.1
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.6e-61 241.1 380 41.6
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 5.3e-60 236.1 340 43.8
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 5.3e-60 236.1 232 57.3
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.0e-55 221.9 443 38.1
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 1.9e-54 217.6 444 39.0
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 2.2e-53 214.2 238 50.0
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 9.1e-52 208.8 308 43.8
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 2.6e-51 207.2 237 49.4
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 5.7e-46 189.5 368 38.0
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 4.5e-43 179.9 231 45.9
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.2e-40 171.8 295 39.7
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 4.8e-37 159.8 268 40.7
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 8.2e-37 159.1 108 70.4
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 5.3e-36 156.4 366 33.3
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 2.6e-35 154.1 193 43.5
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 6.1e-32 142.9 344 32.8
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.0e-31 142.1 251 34.7
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 4.0e-31 140.2 290 34.8
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 3.3e-30 137.1 162 42.6
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 5.2e-23 113.2 106 44.3
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.2e-22 112.1 84 65.5
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 1.6e-19 101.7 164 39.6
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.8e-16 90.9 68 66.2
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.3e-13 82.0 243 30.5
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 3.7e-13 80.5 132 38.6
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 3.4e-06 57.4 53 60.4


User provided reference genes

Program Settings