Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 3.0e-31 137.9 70 100.0
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 2.0e-19 98.6 70 72.9
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 4.5e-19 97.4 60 81.7
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 1.3e-18 95.9 53 88.7
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 1.7e-18 95.5 70 71.4
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 5.0e-18 94.0 64 73.4
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 1.4e-17 92.4 70 71.4
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 1.4e-17 92.4 70 68.6
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.9e-17 92.0 58 77.6
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.9e-17 92.0 58 77.6
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 1.9e-17 92.0 70 70.0
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 2.5e-17 91.7 55 81.8
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 2.5e-17 91.7 59 76.3
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 2.5e-17 91.7 65 70.8
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 3.2e-17 91.3 59 74.6
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 4.2e-17 90.9 55 80.0
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 4.2e-17 90.9 64 70.3
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 5.5e-17 90.5 55 81.8
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 5.5e-17 90.5 55 78.2
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 7.2e-17 90.1 60 73.3
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 9.4e-17 89.7 62 77.4
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 9.4e-17 89.7 55 78.2
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 9.4e-17 89.7 59 72.9
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 9.4e-17 89.7 57 75.4
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 9.4e-17 89.7 53 81.1
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 1.2e-16 89.4 64 70.3
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.6e-16 89.0 59 72.9
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.6e-16 89.0 59 72.9
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 1.6e-16 89.0 60 70.0
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 1.6e-16 89.0 55 80.0
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 1.6e-16 89.0 55 78.2
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 2.1e-16 88.6 55 80.0
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 2.1e-16 88.6 53 79.2
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 2.1e-16 88.6 57 73.7
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 2.1e-16 88.6 70 68.6
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 2.7e-16 88.2 54 79.6
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 2.7e-16 88.2 49 87.8
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 2.7e-16 88.2 55 80.0
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 2.7e-16 88.2 57 73.7
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 2.7e-16 88.2 63 69.8
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 2.7e-16 88.2 70 64.3
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 2.7e-16 88.2 65 69.2
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 2.7e-16 88.2 59 74.6
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 2.7e-16 88.2 64 71.9
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 3.6e-16 87.8 70 65.7
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 3.6e-16 87.8 52 80.8
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 3.6e-16 87.8 52 80.8
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 3.6e-16 87.8 68 64.7
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 4.7e-16 87.4 54 75.9
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 4.7e-16 87.4 55 78.2
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 4.7e-16 87.4 55 78.2
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 4.7e-16 87.4 55 78.2
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 4.7e-16 87.4 55 78.2
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 4.7e-16 87.4 55 78.2
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 4.7e-16 87.4 55 78.2
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 4.7e-16 87.4 55 78.2
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 6.1e-16 87.0 55 80.0
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 6.1e-16 87.0 55 78.2
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 6.1e-16 87.0 57 75.4
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 6.1e-16 87.0 57 75.4
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 6.1e-16 87.0 52 82.7
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 6.1e-16 87.0 64 71.9
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 8.0e-16 86.7 52 78.8
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 8.0e-16 86.7 59 72.9
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 8.0e-16 86.7 59 74.6
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 8.0e-16 86.7 59 74.6
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 8.0e-16 86.7 62 69.4
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 8.0e-16 86.7 58 75.9
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 1.0e-15 86.3 55 78.2
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 1.0e-15 86.3 55 78.2
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 1.0e-15 86.3 60 71.7
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 1.4e-15 85.9 68 64.7
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 1.4e-15 85.9 59 74.6
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 1.4e-15 85.9 59 74.6
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 1.8e-15 85.5 61 70.5
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 1.8e-15 85.5 61 70.5
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 1.8e-15 85.5 57 73.7
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.8e-15 85.5 57 73.7
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 1.8e-15 85.5 58 70.7
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 2.3e-15 85.1 53 81.1
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 2.3e-15 85.1 55 76.4
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 2.3e-15 85.1 59 71.2
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 2.3e-15 85.1 59 71.2
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 3.0e-15 84.7 46 87.0
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 3.0e-15 84.7 55 78.2
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 3.0e-15 84.7 58 72.4
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 3.9e-15 84.3 57 73.7
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 5.2e-15 84.0 63 68.3
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 5.2e-15 84.0 50 78.0
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 5.2e-15 84.0 59 71.2
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 5.2e-15 84.0 59 71.2
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 5.2e-15 84.0 63 66.7
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 8.8e-15 83.2 49 79.6
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 8.8e-15 83.2 57 71.9
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 1.1e-14 82.8 49 79.6
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 2.0e-14 82.0 52 75.0
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 2.6e-14 81.6 58 69.0
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 3.3e-14 81.3 50 78.0
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 8.2e-13 76.6 47 78.7
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 4.1e-12 74.3 48 70.8
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 4.1e-12 74.3 52 69.2
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 4.1e-12 74.3 58 65.5
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 5.3e-12 73.9 41 82.9
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 1.2e-11 72.8 58 65.5
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 1.6e-11 72.4 50 76.0
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 5.0e-10 67.4 64 53.1
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 7.2e-09 63.5 46 67.4
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 1.2e-08 62.8 53 58.5
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 6.7e-07 57.0 43 65.1


User provided reference genes

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