Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO566G0179 Papaver somniferum HOM05D006031 ORTHO05D007417 9.2e-116 420.2 212 100.0
PSO782G0755 Papaver somniferum HOM05D006031 ORTHO05D007417 3.0e-114 415.2 212 98.1
EL10Ac8g18430 Beta vulgaris HOM05D006031 ORTHO05D007417 7.3e-97 357.5 207 82.6
CAN.G478.5 Capsicum annuum HOM05D006031 ORTHO05D007417 9.6e-97 357.1 211 81.5
Atru.chr7.1388 Acer truncatum HOM05D006031 ORTHO05D007417 1.6e-96 356.3 211 82.0
AUR62021455 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.6e-96 356.3 205 85.4
GSVIVG01015348001 Vitis vinifera HOM05D006031 ORTHO05D007417 2.8e-96 355.5 209 80.9
Solyc12g006030.2 Solanum lycopersicum HOM05D006031 ORTHO05D007417 6.2e-96 354.4 211 81.5
Sopen12g002000 Solanum pennellii HOM05D006031 ORTHO05D007417 1.1e-95 353.6 211 81.0
MBI04_g14932_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 8.9e-95 350.5 205 81.5
TAR624G0502 Trochodendron aralioides HOM05D006031 ORTHO05D007417 8.9e-95 350.5 205 81.5
Hma1.2p1_0945F.1_g240050 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 1.5e-94 349.7 209 79.9
QL02p044744 Quercus lobata HOM05D006031 ORTHO05D007417 1.5e-94 349.7 209 80.9
Dinv41637 Davidia involucrata HOM05D006031 ORTHO05D007417 2.0e-94 349.4 208 80.8
Lsat_1_v5_gn_4_6541 Lactuca sativa HOM05D006031 ORTHO05D007417 2.0e-94 349.4 210 81.0
Thecc.09G105700 Theobroma cacao HOM05D006031 ORTHO05D007417 2.6e-94 349.0 209 81.3
Aqoxy7G01527 Aquilegia oxysepala HOM05D006031 ORTHO05D007417 3.4e-94 348.6 210 78.1
Cc06_g10050 Coffea canephora HOM05D006031 ORTHO05D007417 3.4e-94 348.6 209 78.9
Gorai.010G073700 Gossypium raimondii HOM05D006031 ORTHO05D007417 3.4e-94 348.6 209 81.8
Migut.K00493 Erythranthe guttata HOM05D006031 ORTHO05D007417 5.8e-94 347.8 211 78.7
Manes.03G024000 Manihot esculenta HOM05D006031 ORTHO05D007417 5.8e-94 347.8 209 81.3
Actinidia20400 Actinidia chinensis HOM05D006031 ORTHO05D007417 7.6e-94 347.4 206 80.6
COL.COLO4_34809 Corchorus olitorius HOM05D006031 ORTHO05D007417 7.6e-94 347.4 207 81.2
Gohir.A06G064600 Gossypium hirsutum HOM05D006031 ORTHO05D007417 7.6e-94 347.4 209 81.3
Nitab4.5_0000952g0030 Nicotiana tabacum HOM05D006031 ORTHO05D007417 7.6e-94 347.4 211 78.7
CiPaw.03G228000 Carya illinoinensis HOM05D006031 ORTHO05D007417 9.9e-94 347.1 209 80.4
Nn2g11655 Nelumbo nucifera HOM05D006031 ORTHO05D007417 1.3e-93 346.7 205 82.9
Sc18g0001360 Simmondsia chinensis HOM05D006031 ORTHO05D007417 1.3e-93 346.7 205 81.0
HanXRQChr17g0570151 Helianthus annuus HOM05D006031 ORTHO05D007417 2.9e-93 345.5 210 81.0
MD02G1057400 Malus domestica HOM05D006031 ORTHO05D007417 2.9e-93 345.5 206 79.1
Hund26230 Selenicereus undatus HOM05D006031 ORTHO05D007417 2.9e-93 345.5 205 81.5
Eucgr.C03802 Eucalyptus grandis HOM05D006031 ORTHO05D007417 4.9e-93 344.7 206 80.1
Gohir.D06G063200 Gossypium hirsutum HOM05D006031 ORTHO05D007417 6.4e-93 344.4 209 80.9
PGR102G2811 Punica granatum HOM05D006031 ORTHO05D007417 6.4e-93 344.4 209 80.9
Ca_25548_v3 Cicer arietinum L. HOM05D006031 ORTHO05D007417 1.4e-92 343.2 211 79.1
Peaxi162Scf00539g00717 Petunia axillaris HOM05D006031 ORTHO05D007417 4.2e-92 341.7 211 79.6
TPR.G34905 Trifolium pratense HOM05D006031 ORTHO05D007417 5.4e-92 341.3 211 79.1
Aa31LG2G21560 Aethionema arabicum HOM05D006031 ORTHO05D007417 7.1e-92 340.9 206 80.1
CANSAT56G1289 Cannabis sativa HOM05D006031 ORTHO05D007417 7.1e-92 340.9 206 80.1
Nitab4.5_0000010g0020 Nicotiana tabacum HOM05D006031 ORTHO05D007417 7.1e-92 340.9 211 77.3
THA.LOC104804018 Tarenaya hassleriana HOM05D006031 ORTHO05D007417 7.1e-92 340.9 205 81.0
RcHm_v2.0_Chr2g0091271 Rosa chinensis HOM05D006031 ORTHO05D007417 9.3e-92 340.5 209 78.0
TWI63G0954 Tripterygium wilfordii HOM05D006031 ORTHO05D007417 9.3e-92 340.5 209 78.5
AUR62010942 Chenopodium quinoa HOM05D006031 ORTHO05D007417 1.2e-91 340.1 205 82.9
Sabra18G0072100 Salix brachista HOM05D006031 ORTHO05D007417 2.7e-91 339.0 209 77.0
Ciclev10009448m.g Citrus clementina HOM05D006031 ORTHO05D007417 3.5e-91 338.6 215 78.1
Thhalv10026253m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 7.8e-91 337.4 206 80.1
Lalb_Chr22g0352651 Lupinus albus HOM05D006031 ORTHO05D007417 7.8e-91 337.4 209 77.0
FAN23G2797 Fragaria x ananassa HOM05D006031 ORTHO05D007417 1.0e-90 337.0 209 78.0
Sp7g26830 Schrenkiella parvula HOM05D006031 ORTHO05D007417 1.3e-90 336.7 208 78.4
A03p58440 Brassica napus HOM05D006031 ORTHO05D007417 1.7e-90 336.3 208 78.4
C01p10630 Brassica napus HOM05D006031 ORTHO05D007417 1.7e-90 336.3 208 78.4
Cpa.g.sc12.30 Carica papaya HOM05D006031 ORTHO05D007417 1.7e-90 336.3 208 76.4
Glyma.01G145300 Glycine max HOM05D006031 ORTHO05D007417 1.7e-90 336.3 205 79.0
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 2.3e-90 335.9 205 79.0
Medtr1g035260 Medicago truncatula HOM05D006031 ORTHO05D007417 3.0e-90 335.5 211 77.7
BraA03t14904Z Brassica rapa HOM05D006031 ORTHO05D007417 3.9e-90 335.1 208 77.9
A01p09080 Brassica napus HOM05D006031 ORTHO05D007417 5.1e-90 334.7 208 77.9
VMungo0464G0135 Vigna mungo HOM05D006031 ORTHO05D007417 5.1e-90 334.7 211 76.8
BcaNung01361 Brassica carinata HOM05D006031 ORTHO05D007417 8.7e-90 334.0 208 78.4
MELO3C004569.2 Cucumis melo HOM05D006031 ORTHO05D007417 8.7e-90 334.0 210 76.2
BcaC09g51657 Brassica carinata HOM05D006031 ORTHO05D007417 1.1e-89 333.6 208 77.9
BolC1t01025H Brassica oleracea HOM05D006031 ORTHO05D007417 1.1e-89 333.6 208 77.9
BolC7t46125H Brassica oleracea HOM05D006031 ORTHO05D007417 1.1e-89 333.6 208 77.4
BraA01t00856Z Brassica rapa HOM05D006031 ORTHO05D007417 1.9e-89 332.8 208 77.9
Potri.018G083800 Populus trichocarpa HOM05D006031 ORTHO05D007417 1.9e-89 332.8 209 76.1
FvH4_1g05640 Fragaria vesca HOM05D006031 ORTHO05D007417 2.5e-89 332.4 209 77.0
arahy.Tifrunner.gnm1.ann1.4UU729 Arachis hypogaea HOM05D006031 ORTHO05D007417 3.3e-89 332.0 209 76.6
C07p56460 Brassica napus HOM05D006031 ORTHO05D007417 3.3e-89 332.0 208 76.9
CDE02G2180 Ceratophyllum demersum HOM05D006031 ORTHO05D007417 3.3e-89 332.0 215 74.9
SalBow3G0984 Salvia bowleyana HOM05D006031 ORTHO05D007417 3.3e-89 332.0 213 76.1
CsaV3_2G002120 Cucumis sativus L. HOM05D006031 ORTHO05D007417 4.3e-89 331.6 210 75.7
FAN26G3395 Fragaria x ananassa HOM05D006031 ORTHO05D007417 4.3e-89 331.6 209 76.6
AT4G28830 Arabidopsis thaliana HOM05D006031 ORTHO05D007417 5.6e-89 331.3 208 77.9
Carub.0007s1181 Capsella rubella HOM05D006031 ORTHO05D007417 5.6e-89 331.3 208 77.4
FAN26G0948 Fragaria x ananassa HOM05D006031 ORTHO05D007417 5.6e-89 331.3 206 77.2
arahy.Tifrunner.gnm1.ann1.P4D2XC Arachis hypogaea HOM05D006031 ORTHO05D007417 7.3e-89 330.9 209 76.1
BcaC06g32602 Brassica carinata HOM05D006031 ORTHO05D007417 9.6e-89 330.5 206 77.7
Phvul.004G168000 Phaseolus vulgaris HOM05D006031 ORTHO05D007417 1.6e-88 329.7 209 76.6
ATR0315G117 Amborella trichopoda HOM05D006031 ORTHO05D007417 8.1e-88 327.4 210 74.8
AL7G23660 Arabidopsis lyrata HOM05D006031 ORTHO05D007417 8.1e-88 327.4 207 77.3
HPP92_005270 Vanilla planifolia HOM05D006031 ORTHO05D007417 4.0e-87 325.1 210 74.8
CSS0004856 Camellia sinensis var. sinensis HOM05D006031 ORTHO05D007417 1.2e-86 323.6 210 75.7
Os06g0162600 Oryza sativa ssp. japonica HOM05D006031 ORTHO05D007417 3.4e-86 322.0 210 73.8
ClCG11G002340 Citrullus lanatus HOM05D006031 ORTHO05D007417 4.4e-86 321.6 231 68.4
Ah.09g230920 Amaranthus hybridus HOM05D006031 ORTHO05D007417 5.8e-86 321.2 186 82.8
Actinidia09434 Actinidia chinensis HOM05D006031 ORTHO05D007417 2.9e-85 318.9 209 74.6
Zm00001eb271370 Zea mays HOM05D006031 ORTHO05D007417 1.1e-84 317.0 205 76.1
vmacro10877 Vaccinium macrocarpon HOM05D006031 ORTHO05D007417 6.6e-82 307.8 209 72.7
Duzib150G0325 Durio zibethinus HOM05D006031 ORTHO05D007417 8.1e-80 300.8 209 73.2
unitig_62.g23476 Utricularia gibba HOM05D006031 ORTHO05D007417 1.4e-79 300.1 214 69.2
Mapoly0136s0020 Marchantia polymorpha HOM05D006031 ORTHO05D007417 6.9e-79 297.7 203 70.0
Cfa003225 Carpinus fangiana HOM05D006031 ORTHO05D007417 2.6e-78 295.8 209 72.2
SGA_v2.0_scaffold387G50523 Striga asiatica HOM05D006031 ORTHO05D007417 4.9e-77 291.6 214 64.0
SMO304G0145 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 6.4e-77 291.2 203 68.0
Pp3c6_12910 Physcomitrium patens HOM05D006031 ORTHO05D007417 8.4e-77 290.8 203 68.5
CARHR236620 Cardamine hirsuta HOM05D006031 ORTHO05D007417 1.9e-76 289.7 207 70.5
SMO164G0018 Selaginella moellendorffii HOM05D006031 ORTHO05D007417 4.2e-76 288.5 203 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3645 Anthoceros agrestis HOM05D006031 ORTHO05D007417 5.4e-76 288.1 203 66.5
Prupe.7G225500 Prunus persica HOM05D006031 ORTHO05D007417 1.1e-73 280.4 178 75.3
Hma1.2p1_0945F.1_g240060 Hydrangea macrophylla HOM05D006031 ORTHO05D007417 4.3e-73 278.5 166 78.3
ClCG06G015420 Citrullus lanatus HOM05D006031 ORTHO05D007417 8.1e-72 274.2 174 74.1
Haze_25783 Corylus avellana HOM05D006031 ORTHO05D007417 8.1e-72 274.2 190 72.1
Dinv41633 Davidia involucrata HOM05D006031 ORTHO05D007417 1.4e-71 273.5 169 76.3
Rhsim05G0043800 Rhododendron simsii HOM05D006031 ORTHO05D000070 3.3e-65 252.3 253 53.8
PGSC0003DMG400013889 Solanum tuberosum HOM05D000011 ORTHO05D007417 4.1e-63 245.4 195 64.6
MSTRG.26365 Avicennia marina HOM05D006031 ORTHO05D007417 9.0e-63 244.2 159 74.2
Lj2g0026722 Lotus japonicus HOM05D006031 ORTHO05D007417 2.0e-62 243.0 163 73.6
Psat1g044640 Pisum sativum HOM05D006031 ORTHO05D007417 7.6e-62 241.1 157 75.8
Cre08.g384700 Chlamydomonas reinhardtii HOM05D006031 ORTHO05D007417 1.1e-55 220.7 211 52.1
Sed0012983 Sechium edule HOM05D006031 ORTHO05D007417 1.3e-53 213.8 138 72.5
PRCOL_00003743 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 1.7e-53 213.4 215 51.2
CBR_g49195 Chara braunii HOM05D005459 ORTHO05D006751 7.2e-52 208.0 182 56.0
arahy.Tifrunner.gnm1.ann1.PEIA6U Arachis hypogaea HOM05D006031 ORTHO05D007417 2.4e-47 193.0 157 63.1
Zm00001eb271350 Zea mays HOM05D006031 ORTHO05D007417 2.0e-46 189.9 123 74.8
Zm00001eb442390 Zea mays HOM05D006031 ORTHO05D007417 2.0e-46 189.9 123 74.8
DCAR_012059 Daucus carota HOM05D006031 ORTHO05D007417 8.5e-45 184.5 142 65.5
MCO05G480 Micromonas commoda HOM05D006031 ORTHO05D007417 1.1e-44 184.1 210 48.6
Haze_26211 Corylus avellana HOM05D006031 ORTHO05D007417 2.8e-40 169.5 234 42.7
Haze_27462 Corylus avellana HOM05D006031 ORTHO05D007417 2.8e-40 169.5 234 42.7
Lj4A429T15 Lonicera japonica HOM05D006031 ORTHO05D007417 1.9e-36 156.8 95 78.9
PRCOL_00005480 Prasinoderma coloniale HOM05D006031 ORTHO05D007417 7.5e-25 118.2 194 36.1
BcaC09g51665 Brassica carinata HOM05D006031 ORTHO05D007417 1.7e-21 107.1 89 61.8
Lsat_1_v5_gn_8_38160 Lactuca sativa HOM05D006031 ORTHO05D007417 1.2e-19 100.9 104 52.9
SEGI_07643 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 2.7e-19 99.8 72 62.5
AUR62033208 Chenopodium quinoa HOM05D003603 ORTHO05D004186 9.8e-17 91.3 53 83.0
AUR62044225 Chenopodium quinoa HOM05D003603 ORTHO05D004186 9.8e-17 91.3 52 84.6
Glyma.09G193200 Glycine max HOM05D006031 ORTHO05D007417 7.0e-15 85.1 73 57.5
Zm00001eb271390 Zea mays HOM05D006031 ORTHO05D007417 7.0e-15 85.1 53 79.2
VMungo0464G0776 Vigna mungo HOM05D000002 ORTHO05D000001 1.2e-14 84.3 65 66.2
SEGI_21752 Sequoiadendron giganteum HOM05D006031 ORTHO05D007417 5.0e-13 79.0 57 61.4
Lj4C429T0 Lonicera japonica HOM05D002180 ORTHO05D001339 3.6e-11 72.8 47 76.6
MBI06_g04307_MAGBIO Magnolia biondii HOM05D006031 ORTHO05D007417 6.1e-11 72.0 134 41.0
Medtr6g087210 Medicago truncatula HOM05D006031 ORTHO05D007417 1.0e-10 71.2 50 68.0
PGSC0003DMG400015828 Solanum tuberosum HOM05D000124 ORTHO05D397188 1.1e-07 61.2 36 72.2
Thhalv10002738m.g Eutrema salsugineum HOM05D006031 ORTHO05D007417 1.8e-07 60.5 39 71.8
Lsat_1_v5_gn_2_108580 Lactuca sativa HOM05D006031 ORTHO05D007417 1.8e-07 60.5 39 82.1
COL.COLO4_34793 Corchorus olitorius HOM05D006031 ORTHO05D007417 5.9e-06 55.5 33 78.8


User provided reference genes

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