Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO548G0123 Papaver somniferum HOM05D007792 ORTHO05D009931 1.2e-56 223.0 118 100.0
Nn021s41529 Nelumbo nucifera HOM05D007792 ORTHO05D009931 2.0e-51 205.7 121 90.9
Oeu028775.1 Olea europaea HOM05D007792 ORTHO05D009931 8.3e-50 200.3 117 89.7
Oeu058366.1 Olea europaea HOM05D007792 ORTHO05D009931 8.3e-50 200.3 117 89.7
RcHm_v2.0_CPg0502001 Rosa chinensis HOM05D007792 ORTHO05D009931 7.0e-49 197.2 118 87.3
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 6.0e-48 194.1 118 86.4
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 6.0e-48 194.1 118 86.4
PGR111G0084 Punica granatum HOM05D007792 ORTHO05D009931 1.0e-47 193.4 116 87.9
MELO3C027088.2 Cucumis melo HOM05D007792 ORTHO05D009931 1.7e-47 192.6 117 85.5
SalBow1G1024 Salvia bowleyana HOM05D007792 ORTHO05D009931 5.0e-47 191.0 115 86.1
HanXRQChr01g0020291 Helianthus annuus HOM05D007792 ORTHO05D009931 6.6e-47 190.7 117 86.3
HanXRQChr04g0094291 Helianthus annuus HOM05D007792 ORTHO05D009931 6.6e-47 190.7 117 86.3
HanXRQChr10g0283611 Helianthus annuus HOM05D007792 ORTHO05D009931 6.6e-47 190.7 117 86.3
HanXRQChr10g0284301 Helianthus annuus HOM05D007792 ORTHO05D009931 6.6e-47 190.7 117 86.3
HanXRQChr10g0318141 Helianthus annuus HOM05D007792 ORTHO05D009931 6.6e-47 190.7 117 86.3
HanXRQChr11g0326891 Helianthus annuus HOM05D007792 ORTHO05D009931 6.6e-47 190.7 117 86.3
HanXRQCPg0580101 Helianthus annuus HOM05D007792 ORTHO05D009931 6.6e-47 190.7 117 86.3
HanXRQChr04g0095111 Helianthus annuus HOM05D007792 ORTHO05D009931 8.6e-47 190.3 117 85.5
Gohir.A12G229400 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.1e-46 189.9 118 87.3
DCAR_032507 Daucus carota HOM05D007792 ORTHO05D009931 1.9e-46 189.1 117 85.5
Gohir.D01G101995 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.9e-46 189.1 118 86.4
Sed0001088 Sechium edule HOM05D007792 ORTHO05D009931 6.2e-45 184.1 118 84.7
CARHR282170 Cardamine hirsuta HOM05D007792 ORTHO05D009931 8.1e-45 183.7 118 81.4
HanXRQChr02g0052571 Helianthus annuus HOM05D007792 ORTHO05D009931 8.1e-45 183.7 117 84.6
CAN.G1148.9 Capsicum annuum HOM05D007792 ORTHO05D009931 1.1e-44 183.3 115 83.5
CAN.G2018.13 Capsicum annuum HOM05D007792 ORTHO05D009931 1.1e-44 183.3 115 83.5
CAN.G438.83 Capsicum annuum HOM05D007792 ORTHO05D009931 1.1e-44 183.3 115 83.5
AL2G21630 Arabidopsis lyrata HOM05D007792 ORTHO05D009931 2.3e-44 182.2 118 80.5
ATCG00660 Arabidopsis thaliana HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
BNapus_Darmor_BZH_scaffold_287p00200 Brassica napus HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
C02p43590 Brassica napus HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
C06p22950 Brassica napus HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
BolSC29t60598H Brassica oleracea HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
BolSC47t61086H Brassica oleracea HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
BraSC138t45565Z Brassica rapa HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
BraSC25t45855Z Brassica rapa HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
BraSC58t46432Z Brassica rapa HOM05D007792 ORTHO05D009931 3.1e-44 181.8 118 80.5
MELO3C028023.2 Cucumis melo HOM05D007792 ORTHO05D009931 1.3e-42 176.4 109 83.5
Oeu053978.1 Olea europaea HOM05D007792 ORTHO05D009931 6.4e-42 174.1 105 87.6
BolC6t36199H Brassica oleracea HOM05D007792 ORTHO05D009931 3.2e-41 171.8 118 76.3
Phvul.002G090500 Phaseolus vulgaris HOM05D007792 ORTHO05D009931 3.2e-41 171.8 118 78.0
Nn6g32081 Nelumbo nucifera HOM05D007792 ORTHO05D009931 4.1e-41 171.4 105 88.6
BraSC58t46493Z Brassica rapa HOM05D007792 ORTHO05D009931 1.2e-40 169.9 119 76.5
Glyma.12G232100 Glycine max HOM05D007792 ORTHO05D009931 1.2e-40 169.9 118 75.4
Gohir.D09G044333 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.0e-39 165.2 103 85.4
Gohir.A11G230404 Gossypium hirsutum HOM05D007792 ORTHO05D009931 1.5e-38 162.9 103 84.5
Lalb_Chr07g0192061 Lupinus albus HOM05D007792 ORTHO05D009931 5.6e-38 161.0 118 73.7
Lalb_Chr08g0237911 Lupinus albus HOM05D007792 ORTHO05D009931 5.6e-38 161.0 118 73.7
Gohir.A02G053101 Gossypium hirsutum HOM05D007792 ORTHO05D009931 7.3e-38 160.6 114 74.6
LjContig00318g0025275 Lotus japonicus HOM05D007792 ORTHO05D009931 2.8e-37 158.7 120 71.7
MELO3C028123.2 Cucumis melo HOM05D007792 ORTHO05D009931 5.2e-36 154.5 95 82.1
SGA_v2.0_scaffold479G52248 Striga asiatica HOM05D007792 ORTHO05D009931 1.5e-35 152.9 116 72.4
BolSC29t60477H Brassica oleracea HOM05D007792 ORTHO05D009931 7.6e-35 150.6 95 81.1
Medtr4g034720 Medicago truncatula HOM05D007792 ORTHO05D009931 9.9e-35 150.2 120 66.7
Solyc00g180440.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 1.4e-33 146.4 84 90.5
Gorai.012G094800 Gossypium raimondii HOM05D007792 ORTHO05D009931 1.9e-33 146.0 100 78.0
Gohir.D04G084960 Gossypium hirsutum HOM05D007792 ORTHO05D009931 2.4e-33 145.6 100 78.0
Gorai.011G046100 Gossypium raimondii HOM05D007792 ORTHO05D009931 5.4e-33 144.4 103 75.7
Solyc11g063720.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 7.8e-32 140.6 86 83.7
Sed0005117 Sechium edule HOM05D007792 ORTHO05D009931 3.0e-31 138.7 118 69.5
Solyc11g063660.1 Solanum lycopersicum HOM05D007792 ORTHO05D009931 6.6e-31 137.5 86 81.4
Lalb_Chr23g0274331 Lupinus albus HOM05D007792 ORTHO05D009931 8.6e-31 137.1 103 74.8
Solyc11g063440.3 Solanum lycopersicum HOM05D007792 ORTHO05D009931 8.6e-31 137.1 86 82.6
BolC2t08921H Brassica oleracea HOM05D007792 ORTHO05D009931 1.9e-30 136.0 93 75.3
Nitab4.5_0007104g0100 Nicotiana tabacum HOM05D007792 ORTHO05D009931 1.8e-28 129.4 79 83.5
Gohir.D01G169022 Gossypium hirsutum HOM05D007792 ORTHO05D009931 5.2e-28 127.9 95 74.7
Glyma.01G201700 Glycine max HOM05D007792 ORTHO05D009931 2.0e-27 125.9 118 60.2
Gorai.002G210300 Gossypium raimondii HOM05D007792 ORTHO05D009931 4.4e-27 124.8 89 75.3
BolC8t52434H Brassica oleracea HOM05D007792 ORTHO05D009931 2.2e-26 122.5 120 60.8
C04p42970 Brassica napus HOM05D007792 ORTHO05D009931 3.8e-26 121.7 79 79.7
Sc09g0009720 Simmondsia chinensis HOM05D007792 ORTHO05D001488 8.4e-26 120.6 71 85.9
Duzib071G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 5.4e-25 117.9 82 78.0
Duzib233G0002 Durio zibethinus HOM05D000274 ORTHO05D002552 5.4e-25 117.9 82 78.0
Duzib237G0004 Durio zibethinus HOM05D000274 ORTHO05D002552 5.4e-25 117.9 82 78.0
Duzib253G0005 Durio zibethinus HOM05D000274 ORTHO05D002552 5.4e-25 117.9 82 78.0
Gorai.001G063300 Gossypium raimondii HOM05D007792 ORTHO05D009931 1.2e-24 116.7 100 67.0
Aqoxy2G00943 Aquilegia oxysepala HOM05D007792 ORTHO05D009931 1.6e-24 116.3 87 70.1
CARHR287410 Cardamine hirsuta HOM05D007792 ORTHO05D009931 2.7e-24 115.5 84 75.0
Sc22g0003450 Simmondsia chinensis HOM05D002194 ORTHO05D002840 1.3e-23 113.2 84 72.6
arahy.Tifrunner.gnm1.ann1.H056B9 Arachis hypogaea HOM05D007792 ORTHO05D009931 2.3e-23 112.5 116 57.8
Medtr7g085940 Medicago truncatula HOM05D007792 ORTHO05D009931 3.0e-23 112.1 89 65.2
arahy.Tifrunner.gnm1.ann1.81C611 Arachis hypogaea HOM05D007792 ORTHO05D009931 4.3e-22 108.2 116 54.3
arahy.Tifrunner.gnm1.ann1.4Z8JUD Arachis hypogaea HOM05D007792 ORTHO05D009931 5.6e-22 107.8 93 62.4
Solyc00g500254.1 Solanum lycopersicum HOM05D007792 ORTHO05D010943 9.3e-17 90.5 70 71.4
Eucgr.D02558 Eucalyptus grandis HOM05D007792 ORTHO05D009931 7.4e-14 80.9 56 75.0
MD11G1294300 Malus domestica HOM05D007792 ORTHO05D009931 2.4e-12 75.9 42 95.2
Haze_24215 Corylus avellana HOM05D002400 ORTHO05D002568 1.2e-11 73.6 53 69.8
CiPaw.07G076700 Carya illinoinensis HOM05D007792 ORTHO05D009931 4.5e-11 71.6 66 53.0
Phvul.004G105000 Phaseolus vulgaris HOM05D007792 ORTHO05D009931 1.9e-09 66.2 97 47.4
Gohir.A10G134900 Gossypium hirsutum HOM05D007792 ORTHO05D009931 3.2e-09 65.5 43 79.1
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 4.6e-08 61.6 88 42.0
EL10Ac4g08243 Beta vulgaris HOM05D007792 ORTHO05D009931 1.8e-07 59.7 93 50.5
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 3.0e-07 58.9 89 39.3
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 3.9e-07 58.5 100 40.0
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 3.9e-07 58.5 89 37.1
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 8.7e-07 57.4 95 36.8
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 1.1e-06 57.0 82 42.7
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 1.5e-06 56.6 89 38.2
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 1.9e-06 56.2 89 38.2
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 1.9e-06 56.2 87 39.1
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 1.9e-06 56.2 89 38.2
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 1.9e-06 56.2 89 38.2
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 2.5e-06 55.8 89 37.1
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 2.5e-06 55.8 87 37.9
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 2.5e-06 55.8 87 37.9
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 2.5e-06 55.8 89 38.2
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 2.5e-06 55.8 95 35.8
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 2.5e-06 55.8 82 40.2
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 3.3e-06 55.5 89 38.2
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 3.3e-06 55.5 89 38.2
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 3.3e-06 55.5 82 39.0
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 4.3e-06 55.1 89 37.1
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 4.3e-06 55.1 89 37.1
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 4.3e-06 55.1 87 39.1
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 4.3e-06 55.1 82 39.0
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 5.6e-06 54.7 82 37.8
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 5.6e-06 54.7 89 37.1
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 5.6e-06 54.7 89 37.1
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 5.6e-06 54.7 82 39.0
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 7.4e-06 54.3 82 37.8
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 38.2
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 37.1
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 38.2
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 38.2
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 36.0
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 7.4e-06 54.3 83 38.6
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 7.4e-06 54.3 82 37.8
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 37.1
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 38.2
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 7.4e-06 54.3 82 37.8
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 7.4e-06 54.3 82 37.8
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 36.0
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 37.1
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 37.1
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 7.4e-06 54.3 89 38.2
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 36.0
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 36.0
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 38.2
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 38.2
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 38.2
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 36.0
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 38.2
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 38.2
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 34.8
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 9.6e-06 53.9 87 37.9
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 9.6e-06 53.9 87 37.9
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 37.1
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 37.1
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 37.1
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 37.1
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 9.6e-06 53.9 89 37.1
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 9.6e-06 53.9 87 37.9


User provided reference genes

Program Settings