Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 5.7e-94 347.4 159 100.0
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 4.1e-92 341.3 159 97.5
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 2.0e-91 339.0 159 96.2
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 3.4e-91 338.2 159 95.6
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.4e-91 338.2 159 95.6
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 3.4e-91 338.2 159 95.6
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 3.4e-91 338.2 159 95.6
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 1.0e-90 336.7 159 96.2
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.3e-90 336.3 159 95.0
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 2.2e-90 335.5 159 93.7
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 3.8e-90 334.7 159 95.6
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 6.5e-90 334.0 159 93.7
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 6.5e-90 334.0 159 93.7
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 1.1e-89 333.2 159 95.0
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 95.0
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 95.0
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 93.7
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.9e-89 332.4 159 94.3
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 1.9e-89 332.4 160 94.4
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 1.9e-89 332.4 158 94.3
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 3.2e-89 331.6 159 94.3
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-89 331.3 159 93.7
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 1.2e-88 329.7 159 92.5
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.2e-88 329.7 159 92.5
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 3.6e-88 328.2 159 93.1
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 3.6e-88 328.2 157 93.6
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 3.6e-88 328.2 157 93.6
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 3.6e-88 328.2 157 93.6
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 4.7e-88 327.8 159 93.1
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.1
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 1.8e-87 325.9 159 91.8
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 3.9e-87 324.7 159 91.2
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 5.1e-87 324.3 159 91.8
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 1.1e-86 323.2 159 88.7
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 3.3e-86 321.6 159 89.3
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 2.2e-85 318.9 159 91.2
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 2.8e-85 318.5 159 91.2
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 3.7e-85 318.2 158 91.1
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 8.2e-85 317.0 159 89.9
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 1.4e-84 316.2 159 89.3
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.8e-84 315.8 159 89.9
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 3.1e-84 315.1 157 91.7
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 5.3e-84 314.3 159 89.3
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 9.1e-84 313.5 159 88.7
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 1.5e-83 312.8 159 90.6
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 1.0e-82 310.1 151 92.7
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.7e-82 309.3 158 88.6
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.5e-81 306.2 159 87.4
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 1.9e-81 305.8 154 89.6
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 5.5e-81 304.3 142 97.2
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 2.7e-80 302.0 144 93.1
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 3.6e-80 301.6 144 93.1
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 3.6e-80 301.6 144 93.1
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 3.6e-80 301.6 144 93.1
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 8.0e-80 300.4 143 95.1
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 1.7e-77 292.7 159 83.6
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 1.6e-75 286.2 139 92.1
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.6e-75 286.2 159 83.0
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.9e-75 284.3 159 84.3
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 8.5e-74 280.4 159 81.8
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.5e-73 278.9 139 89.9
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 1.2e-72 276.6 149 85.2
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 1.5e-70 269.6 144 86.1
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.8e-69 265.4 134 90.3
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.0e-68 260.8 134 88.1
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.0e-67 259.2 151 82.1
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 2.7e-67 258.8 159 76.7
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-67 258.1 159 76.1
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 7.2e-65 250.8 163 73.0
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 3.6e-64 248.4 159 74.8
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 2.3e-63 245.7 117 95.7
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.4e-62 241.5 132 83.3
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.7e-59 232.3 139 76.3
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 7.7e-59 230.7 135 79.3
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 1.0e-58 230.3 136 80.9
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 8.0e-56 220.7 134 79.1
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.4e-55 219.9 112 88.4
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 3.0e-55 218.8 158 69.0
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 2.0e-54 216.1 109 90.8
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 4.4e-54 214.9 140 74.3
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 4.4e-54 214.9 140 74.3
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 4.4e-54 214.9 140 74.3
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 9.8e-54 213.8 105 93.3
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 3.7e-53 211.8 100 96.0
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-52 210.3 159 63.5
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-52 210.3 159 63.5
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.1e-52 210.3 159 63.5
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.4e-52 209.9 101 92.1
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 2.4e-52 209.1 107 86.9
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 2.4e-52 209.1 107 86.9
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 4.1e-52 208.4 102 91.2
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 7.8e-51 204.1 112 84.8
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.0e-50 203.8 162 66.0
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.7e-50 203.0 95 96.8
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 1.1e-49 200.3 101 88.1
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 9.5e-49 197.2 109 85.3
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 8.0e-48 194.1 110 83.6
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-46 189.9 109 80.7
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.0e-46 189.5 149 71.8
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.6e-46 189.1 111 78.4
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 5.8e-46 188.0 115 73.9
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.3e-45 186.8 108 80.6
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 3.7e-45 185.3 92 92.4
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 7.8e-43 177.6 90 86.7
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 1.7e-42 176.4 83 96.4
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 3.0e-42 175.6 89 89.9
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 3.9e-42 175.3 84 92.9
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 3.9e-42 175.3 100 82.0
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 5.0e-42 174.9 83 95.2
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 8.6e-42 174.1 83 95.2
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 5.6e-41 171.4 83 92.8
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 1.6e-40 169.9 86 87.2
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 6.2e-40 167.9 83 90.4
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 6.8e-39 164.5 82 92.7
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.4e-36 156.8 92 77.2
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 2.7e-35 152.5 78 87.2
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.5e-35 152.1 102 72.5
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 2.3e-34 149.4 72 94.4
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.3e-34 149.4 83 83.1
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 6.6e-34 147.9 83 81.9
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.5e-33 146.7 78 87.2
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 9.5e-33 144.1 68 95.6
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 2.3e-31 139.4 124 59.7
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 3.4e-30 135.6 65 92.3
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 5.4e-28 128.3 59 94.9
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.1e-27 126.3 57 98.2
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.5e-25 120.2 59 89.8
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 4.3e-25 118.6 58 91.4
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 4.7e-24 115.2 55 90.9
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 3.4e-22 109.0 54 90.7
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.4e-22 109.0 69 73.9
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 1.7e-21 106.7 53 88.7
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 3.8e-21 105.5 99 54.5
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 1.1e-20 104.0 50 92.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 4.2e-20 102.1 53 83.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 4.3e-17 92.0 43 90.7
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 7.3e-17 91.3 86 50.0
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 4.8e-16 88.6 41 92.7
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 3.1e-15 85.9 48 83.3
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.7e-13 80.1 39 89.7
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 2.7e-11 72.8 53 64.2
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 5.1e-10 68.6 32 93.8
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 2.5e-09 66.2 68 47.1
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.1e-07 60.8 88 31.8
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 1.4e-07 60.5 60 55.0
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 1.8e-07 60.1 38 65.8
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 6.9e-07 58.2 95 33.7
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 3.4e-06 55.8 115 30.4
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 5.8e-06 55.1 24 95.8
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 5.8e-06 55.1 123 30.9
FvH4_3g38401 Fragaria vesca HOM05D001033 ORTHO05D004888 7.6e-06 54.7 27 88.9
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 9.9e-06 54.3 96 34.4


User provided reference genes

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