Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 2.3e-282 974.9 509 100.0
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 2.5e-199 699.1 509 71.5
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 2.7e-182 642.5 515 68.2
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 2.0e-180 636.3 510 66.5
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 9.1e-178 627.5 498 67.5
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 5.9e-177 624.8 512 66.0
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 1.3e-176 623.6 507 64.9
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 6.5e-176 621.3 512 66.0
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 8.5e-176 620.9 507 66.1
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 8.5e-176 620.9 507 66.1
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 9.4e-175 617.5 511 63.6
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 1.2e-174 617.1 506 65.0
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.8e-171 605.9 511 65.0
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 2.4e-170 602.8 508 62.4
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.9e-167 593.2 513 64.3
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.5e-167 591.7 513 64.1
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.1e-166 589.7 513 63.5
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.8e-165 586.6 512 62.3
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 4.0e-165 585.5 504 63.3
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.7e-164 581.6 511 63.0
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.3e-160 569.7 511 62.0
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.9e-159 566.6 508 61.6
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 1.2e-158 563.9 512 59.8
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.2e-158 563.9 511 61.3
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.2e-158 563.9 511 61.8
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 2.3e-157 559.7 512 58.4
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 2.6e-156 556.2 512 58.2
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 3.4e-156 555.8 509 59.7
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 4.4e-156 555.4 512 58.2
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-154 550.8 512 61.1
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-154 550.8 512 61.1
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-154 550.8 512 61.1
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-154 550.8 512 61.1
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.1e-154 550.8 512 61.1
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 2.4e-154 549.7 515 57.5
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 9.2e-154 547.7 446 68.4
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.3e-152 543.9 457 62.8
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 8.6e-152 541.2 440 64.8
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 3.0e-149 532.7 510 56.9
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 9.8e-148 527.7 513 56.9
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 4.1e-146 522.3 514 57.0
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 4.6e-145 518.8 507 58.0
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 2.5e-143 513.1 509 56.6
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-142 510.4 513 57.5
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 8.0e-142 508.1 509 57.0
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 2.4e-138 496.5 514 55.3
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.0e-138 495.0 427 61.1
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 3.5e-137 492.7 424 63.0
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.5e-137 492.7 405 66.9
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.3e-136 490.7 472 57.0
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-133 481.1 514 56.6
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 1.3e-123 447.6 517 54.0
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 1.6e-121 440.7 335 69.3
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.5e-119 434.1 486 52.1
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.0e-112 409.8 512 48.8
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 9.9e-108 394.8 395 54.4
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 6.4e-99 365.5 361 59.6
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.6e-97 359.4 427 48.0
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.8e-96 357.5 453 49.7
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 2.3e-96 357.1 465 46.7
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 6.2e-94 349.0 301 63.1
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 1.7e-91 340.9 400 49.5
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.3e-87 326.2 292 61.3
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.3e-87 326.2 511 43.2
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 3.7e-86 323.2 335 55.5
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 1.3e-83 314.7 308 57.5
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.6e-81 307.8 233 68.2
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 1.5e-71 274.6 275 57.8
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 2.0e-68 264.2 201 65.7
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 2.0e-68 264.2 201 65.7
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 2.0e-68 264.2 201 65.7
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 2.0e-68 264.2 201 65.7
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 2.0e-68 264.2 201 65.7
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 5.9e-68 262.7 276 54.3
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 5.9e-68 262.7 276 54.3
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.0e-63 247.7 181 70.2
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 7.4e-63 245.7 269 53.2
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 8.2e-62 242.3 170 72.4
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 7.2e-58 229.2 159 73.0
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.2e-58 229.2 299 48.2
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 2.0e-55 221.1 192 60.9
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 1.3e-54 218.4 144 75.7
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 4.8e-54 216.5 323 40.2
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.4e-53 214.9 159 69.2
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 5.3e-53 213.0 145 74.5
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 4.2e-50 203.4 304 44.7
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-48 197.2 145 71.7
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 1.5e-47 194.9 122 77.9
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 3.4e-47 193.7 471 34.8
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.7e-46 191.4 199 55.3
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 2.3e-43 181.0 313 38.7
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 1.0e-40 172.2 120 72.5
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 2.3e-40 171.0 118 71.2
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-38 164.9 158 58.9
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 4.1e-37 160.2 143 60.8
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.9e-36 156.4 136 60.3
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 5.9e-36 156.4 162 55.6
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 2.3e-35 154.5 123 66.7
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 8.6e-35 152.5 114 64.9
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.5e-34 151.8 133 59.4
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 1.5e-34 151.8 136 61.0
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 1.2e-33 148.7 114 64.9
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 3.6e-33 147.1 119 64.7
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 3.1e-32 144.1 119 67.2
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 4.0e-32 143.7 156 52.6
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.4e-31 140.6 132 57.6
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.4e-31 140.6 110 63.6
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 7.5e-31 139.4 113 67.3
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.2e-29 134.0 83 83.1
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 1.3e-27 128.6 85 70.6
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 6.6e-27 126.3 141 51.8
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 6.6e-27 126.3 124 53.2
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.0e-24 117.1 144 47.9
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.5e-23 115.2 87 60.9
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 3.4e-23 114.0 134 49.3
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.4e-23 113.6 83 65.1
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.5e-23 112.8 81 63.0
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 2.2e-22 111.3 115 48.7
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 9.2e-21 105.9 109 52.3
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 1.6e-20 105.1 101 54.5
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 2.1e-20 104.8 111 51.4
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.5e-20 104.0 114 50.0
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.3e-19 102.1 160 41.2
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 4.3e-18 97.1 81 64.2
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 4.3e-18 97.1 517 25.1
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 1.2e-17 95.5 74 58.1
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.2e-17 95.5 54 92.6
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.2e-17 93.2 67 62.7
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.2e-17 93.2 78 61.5
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 3.7e-14 84.0 83 53.0
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 2.4e-13 81.3 62 72.6
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 5.4e-13 80.1 84 50.0
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 2.1e-12 78.2 68 58.8
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 6.0e-12 76.6 81 48.1
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.0e-12 76.6 46 67.4
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.0e-11 75.9 59 61.0
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.0e-11 75.9 59 61.0
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 2.3e-11 74.7 78 55.1
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 1.1e-10 72.4 50 70.0
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 4.3e-10 70.5 57 59.6
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 5.6e-10 70.1 59 64.4
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 5.6e-10 70.1 115 37.4
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 2.8e-09 67.8 38 73.7
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 6.2e-09 66.6 52 69.2
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 8.9e-08 62.8 59 52.5
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 2.6e-07 61.2 60 46.7
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 2.6e-07 61.2 42 78.6
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 1.7e-06 58.5 35 68.6
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 2.2e-06 58.2 42 61.9


User provided reference genes

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