Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 3.4e-13 77.0 38 100.0
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 3.4e-13 77.0 38 100.0
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 1.7e-12 74.7 38 97.4
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 2.2e-12 74.3 36 100.0
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 4.9e-12 73.2 38 94.7
Gohir.A09G245566 Gossypium hirsutum HOM05D019283 ORTHO05D005776 4.2e-11 70.1 38 92.1
Medtr4g034810 Medicago truncatula HOM05D002824 ORTHO05D007162 7.1e-11 69.3 36 91.7
Gohir.D01G102125 Gossypium hirsutum HOM05D019283 ORTHO05D005776 1.6e-10 68.2 35 94.3
Gorai.004G162100 Gossypium raimondii HOM05D019283 ORTHO05D005776 1.6e-10 68.2 38 92.1
Gorai.010G143000 Gossypium raimondii HOM05D019283 ORTHO05D005776 4.6e-10 66.6 38 86.8
Gohir.A05G396450 Gossypium hirsutum HOM05D019283 ORTHO05D005776 1.8e-09 64.7 38 89.5
Gohir.D06G122850 Gossypium hirsutum HOM05D019283 ORTHO05D005776 3.9e-09 63.5 38 84.2
Gohir.D08G062260 Gossypium hirsutum HOM05D019283 ORTHO05D005776 6.7e-09 62.8 34 91.2
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 7.4e-08 59.3 38 68.4
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 9.6e-08 58.9 38 71.1
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 9.6e-08 58.9 38 71.1
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 9.6e-08 58.9 38 71.1
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 1.3e-07 58.5 38 68.4
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 1.3e-07 58.5 38 68.4
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 1.3e-07 58.5 38 68.4
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 1.3e-07 58.5 38 68.4
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 1.6e-07 58.2 38 68.4
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 1.6e-07 58.2 38 68.4
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 1.6e-07 58.2 38 68.4
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 1.6e-07 58.2 38 68.4
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 1.6e-07 58.2 38 68.4
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 1.6e-07 58.2 38 68.4
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.1e-07 57.8 38 63.2
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 2.1e-07 57.8 38 63.2
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 2.1e-07 57.8 38 65.8
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 2.1e-07 57.8 38 65.8
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 2.1e-07 57.8 38 65.8
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 2.1e-07 57.8 38 68.4
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 2.1e-07 57.8 38 65.8
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 68.4
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 65.8
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 65.8
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 65.8
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 68.4
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 65.8
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 65.8
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 65.8
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 68.4
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 65.8
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 2.8e-07 57.4 38 65.8
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 65.8
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 65.8
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 65.8
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 65.8
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 65.8
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 65.8
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 65.8
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 63.2
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 65.8
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 3.7e-07 57.0 38 63.2
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 4.8e-07 56.6 38 63.2
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 4.8e-07 56.6 38 63.2
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 4.8e-07 56.6 38 65.8
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 4.8e-07 56.6 38 65.8
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 4.8e-07 56.6 38 63.2
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 4.8e-07 56.6 38 63.2
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 4.8e-07 56.6 38 63.2
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 4.8e-07 56.6 38 63.2
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 65.8
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 60.5
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 60.5
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 6.2e-07 56.2 38 63.2
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 8.2e-07 55.8 38 63.2
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 8.2e-07 55.8 38 63.2
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 8.2e-07 55.8 38 63.2
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 8.2e-07 55.8 38 60.5
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 1.1e-06 55.5 38 63.2
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 1.4e-06 55.1 38 60.5
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 1.4e-06 55.1 38 60.5
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 1.4e-06 55.1 38 60.5
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 1.4e-06 55.1 38 60.5
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 1.8e-06 54.7 38 60.5
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.8e-06 54.7 38 65.8
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 1.8e-06 54.7 38 60.5
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 1.8e-06 54.7 38 60.5
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 1.8e-06 54.7 38 60.5
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 1.8e-06 54.7 38 63.2
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 1.8e-06 54.7 38 57.9
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 65.8
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 2.4e-06 54.3 38 63.2
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 3.1e-06 53.9 38 57.9
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 3.1e-06 53.9 38 57.9
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 5.3e-06 53.1 38 60.5
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 5.3e-06 53.1 38 60.5
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 6.9e-06 52.8 38 60.5
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 6.9e-06 52.8 38 63.2
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 6.9e-06 52.8 38 60.5
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 9.0e-06 52.4 38 63.2
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 9.0e-06 52.4 38 63.2
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 9.0e-06 52.4 38 63.2


User provided reference genes

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