Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 5.7e-229 797.3 439 100.0
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 3.7e-212 741.5 446 90.4
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.7e-111 407.1 506 51.2
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.3e-84 317.8 409 50.1
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.1e-75 288.1 398 48.0
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 1.9e-70 270.8 389 45.8
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.1e-61 240.7 337 46.0
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.5e-53 213.4 299 47.8
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.6e-53 213.0 290 44.5
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 6.0e-53 212.6 442 39.6
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 5.1e-52 209.5 443 37.0
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 8.7e-52 208.8 305 43.9
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 4.3e-51 206.5 317 45.4
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.8e-50 203.8 382 38.5
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 3.7e-50 203.4 266 48.1
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 9.0e-49 198.7 379 38.8
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 5.8e-48 196.1 387 40.1
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 6.5e-47 192.6 311 46.0
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 8.4e-47 192.2 292 46.6
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 8.4e-47 192.2 376 38.3
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 1.9e-46 191.0 375 40.3
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.0e-44 185.3 392 39.0
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.3e-44 184.9 350 41.7
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 1.8e-44 184.5 353 38.2
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.8e-44 184.5 303 42.9
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 1.8e-44 184.5 270 46.3
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.1e-43 181.8 326 40.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.9e-43 181.0 275 44.0
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.9e-43 181.0 387 40.1
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 9.6e-43 178.7 380 38.2
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 9.6e-43 178.7 225 51.1
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 2.1e-42 177.6 341 40.8
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 3.7e-42 176.8 341 40.5
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 3.7e-42 176.8 245 45.7
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.8e-42 176.4 285 50.2
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 6.2e-42 176.0 282 43.3
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.4e-41 174.1 341 39.3
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.4e-41 174.1 348 37.4
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 2.4e-41 174.1 372 36.3
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 3.1e-41 173.7 390 36.9
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 9.0e-41 172.2 466 32.0
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 9.0e-41 172.2 237 48.1
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 3.4e-40 170.2 341 40.5
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 3.4e-40 170.2 300 38.7
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.0e-39 168.7 392 33.4
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.0e-39 168.7 276 42.8
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.7e-39 167.9 311 40.2
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.7e-39 167.9 386 36.0
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 2.2e-39 167.5 388 33.0
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.2e-39 167.5 328 37.2
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 2.2e-39 167.5 215 47.9
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.9e-39 167.2 382 35.9
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.0e-39 166.4 319 37.6
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 5.0e-39 166.4 197 49.2
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.5e-39 166.0 385 33.0
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 8.4e-39 165.6 363 35.0
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.1e-38 165.2 323 39.6
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.9e-38 164.5 373 34.9
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.5e-38 162.9 323 39.6
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 1.6e-37 161.4 343 41.7
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 4.6e-37 159.8 208 47.1
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.0e-36 158.7 291 37.5
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 3.9e-36 156.8 231 40.3
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 6.7e-36 156.0 279 40.9
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 3.3e-35 153.7 252 44.0
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 5.7e-35 152.9 396 36.1
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 9.7e-35 152.1 395 32.2
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 3.7e-34 150.2 308 37.3
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.1e-33 148.7 286 38.1
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.1e-33 148.7 280 38.9
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 5.3e-33 146.4 261 37.2
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 5.3e-33 146.4 279 38.0
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 5.3e-33 146.4 172 48.3
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 6.9e-33 146.0 198 47.5
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.2e-32 145.2 198 45.5
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 2.0e-32 144.4 379 34.8
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 1.0e-31 142.1 338 34.3
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.7e-31 141.4 209 42.6
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.7e-31 141.4 347 35.4
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-31 141.0 193 45.1
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.2e-31 141.0 287 34.1
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.9e-31 140.6 192 43.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 2.9e-31 140.6 196 44.9
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.4e-30 138.3 188 44.7
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.4e-30 138.3 188 44.7
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.9e-30 137.9 187 44.9
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 2.5e-30 137.5 228 39.9
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 3.2e-30 137.1 142 54.9
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 4.2e-30 136.7 221 41.6
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 4.2e-30 136.7 231 39.8
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 4.2e-30 136.7 213 43.2
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.1e-29 134.4 337 32.6
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 3.6e-29 133.7 367 34.3
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 3.6e-29 133.7 274 35.8
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.6e-29 133.7 409 30.6
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 2.3e-28 131.0 177 47.5
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 2.3e-28 131.0 352 30.4
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.1e-27 128.6 204 39.7
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.0e-27 127.9 324 36.4
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 2.0e-27 127.9 115 53.0
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 3.3e-27 127.1 164 43.3
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 5.7e-27 126.3 214 39.7
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.3e-26 125.2 209 39.7
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 1.3e-26 125.2 356 32.3
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 2.2e-26 124.4 208 39.4
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-26 124.4 212 39.2
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.2e-26 124.4 239 36.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 6.3e-26 122.9 176 41.5
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 8.2e-26 122.5 271 36.2
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 3.1e-25 120.6 437 29.3
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 3.4e-24 117.1 203 42.9
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.0e-23 115.5 357 30.3
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.2e-23 114.4 334 34.1
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 8.5e-23 112.5 275 30.5
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 1.9e-22 111.3 119 47.9
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 3.2e-22 110.5 233 39.5
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 4.2e-22 110.2 282 30.1
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 1.6e-21 108.2 99 52.5
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 2.1e-21 107.8 303 32.3
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.6e-21 107.1 96 53.1
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.6e-21 107.1 96 53.1
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 3.6e-21 107.1 234 31.6
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 4.7e-21 106.7 333 29.1
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 6.1e-21 106.3 279 29.7
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 2.3e-20 104.4 125 44.0
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 6.7e-20 102.8 201 35.3
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.7e-20 102.8 388 29.4
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 6.7e-20 102.8 91 54.9
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.1e-19 102.1 272 35.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.7e-18 98.2 176 35.8
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.7e-18 98.2 331 27.8
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 1.7e-18 98.2 176 35.8
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.8e-18 96.7 203 31.5
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.4e-17 94.4 158 39.9
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 4.1e-17 93.6 208 31.7
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 2.6e-16 90.9 326 28.5
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.5e-16 90.1 212 31.1
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 5.9e-16 89.7 104 43.3
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.0e-15 89.0 174 39.1
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.1e-14 85.5 60 65.0
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 3.2e-14 84.0 96 41.7
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 1.4e-12 78.6 117 39.3
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 5.2e-12 76.6 212 32.5
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 2.6e-11 74.3 216 31.0
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 4.4e-11 73.6 139 36.0
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.2e-10 71.2 171 30.4
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 1.8e-09 68.2 56 60.7
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 2.0e-08 64.7 197 26.4
SMO293G0020 Selaginella moellendorffii HOM05D027797 ORTHO05D003996 2.0e-08 64.7 219 29.2
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 5.9e-08 63.2 55 56.4
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.7e-08 62.8 146 32.9
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 5.0e-07 60.1 103 35.9
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.5e-06 58.5 152 34.2
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.9e-06 58.2 70 48.6
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 4.2e-06 57.0 107 40.2
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 5.5e-06 56.6 123 39.8
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 5.5e-06 56.6 97 37.1


User provided reference genes

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