Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 7.9e-225 783.5 406 100.0
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.7e-180 635.6 358 81.6
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 6.1e-177 624.4 360 80.8
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 1.4e-165 586.6 367 73.3
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.3e-163 579.3 372 72.3
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 3.0e-163 578.9 371 73.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 8.6e-163 577.4 372 72.8
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.5e-162 573.9 369 74.0
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.2e-161 573.5 359 75.8
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.8e-161 572.4 343 77.6
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 2.8e-161 572.4 360 74.4
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.8e-161 572.4 370 72.2
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.1e-160 570.5 366 73.2
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 1.5e-159 566.6 363 72.5
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.0e-159 566.2 371 72.0
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 9.9e-159 563.9 376 71.8
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 2.9e-158 562.4 362 73.5
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.7e-158 562.0 371 72.0
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.1e-157 560.5 370 72.7
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.4e-157 560.1 376 71.5
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.4e-157 560.1 345 75.7
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 1.9e-157 559.7 361 73.1
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.4e-157 559.3 377 71.4
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 4.1e-157 558.5 366 72.1
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.2e-156 557.0 371 71.2
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.6e-156 556.6 360 73.3
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.6e-156 556.6 370 71.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 2.1e-156 556.2 379 69.7
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.1e-156 556.2 376 71.8
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.7e-156 555.8 362 71.3
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 3.5e-156 555.4 361 72.9
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 3.5e-156 555.4 360 72.8
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.0e-156 554.7 370 70.8
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 7.8e-156 554.3 371 70.4
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.0e-155 553.9 376 70.7
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.3e-155 552.7 370 70.8
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 2.3e-155 552.7 360 71.7
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 6.6e-155 551.2 345 75.4
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 6.6e-155 551.2 344 73.5
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 6.6e-155 551.2 348 74.4
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.1e-154 550.4 369 70.7
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.9e-154 549.7 372 69.6
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 4.3e-154 548.5 357 72.5
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 7.3e-154 547.7 372 70.2
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 9.5e-154 547.4 344 75.3
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 9.5e-154 547.4 368 69.6
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 9.5e-154 547.4 360 70.8
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 3.6e-153 545.4 376 68.6
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 4.7e-153 545.0 377 67.4
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 6.2e-153 544.7 359 71.3
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.1e-153 544.3 338 74.0
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-152 543.9 372 70.2
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 1.4e-152 543.5 371 70.1
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 1.4e-152 543.5 371 70.1
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.4e-152 543.5 371 70.6
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.4e-152 543.5 372 69.6
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 1.8e-152 543.1 371 70.1
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 2.4e-152 542.7 373 70.2
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-151 540.4 373 70.0
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 4.4e-151 538.5 360 70.3
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 1.7e-150 536.6 371 67.9
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 1.7e-150 536.6 371 67.9
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 2.2e-150 536.2 370 68.1
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-149 533.1 350 72.6
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 1.9e-149 533.1 337 74.2
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.2e-149 532.3 371 69.3
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.2e-149 532.3 371 69.3
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 3.2e-149 532.3 365 69.6
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 4.1e-149 531.9 363 68.0
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.2e-148 530.4 373 67.8
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 3.5e-148 528.9 360 68.9
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 1.3e-147 526.9 366 68.3
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.3e-147 526.2 338 71.6
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.5e-146 523.5 388 64.9
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 7.3e-146 521.2 360 68.1
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 9.6e-146 520.8 373 66.2
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.2e-145 520.4 375 65.9
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 3.6e-145 518.8 374 66.0
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 6.2e-145 518.1 343 72.0
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 8.1e-145 517.7 353 68.6
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 8.1e-145 517.7 344 70.3
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.1e-144 517.3 354 68.6
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.1e-144 517.3 374 66.0
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.1e-144 517.3 381 64.6
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.4e-144 516.9 362 68.8
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.8e-144 516.5 374 65.8
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.8e-144 516.5 376 65.2
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 2.4e-144 516.2 371 66.6
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 4.0e-144 515.4 360 67.2
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-143 513.8 360 67.8
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.5e-143 513.5 359 67.7
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.6e-143 512.7 370 64.6
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 5.8e-143 511.5 336 71.7
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.2e-142 509.6 371 65.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 2.9e-142 509.2 345 69.9
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.9e-141 506.5 339 70.2
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 4.2e-141 505.4 370 65.9
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 5.4e-141 505.0 345 68.4
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 9.3e-141 504.2 321 69.8
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 7.8e-140 501.1 346 66.8
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 3.9e-139 498.8 375 63.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.3e-137 493.8 358 65.9
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.6e-137 493.4 371 64.7
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.8e-137 491.9 372 62.9
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 8.1e-137 491.1 306 73.9
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 5.3e-136 488.4 377 61.8
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 1.2e-135 487.3 368 63.3
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.4e-135 485.7 339 65.2
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.9e-133 479.9 364 63.7
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 3.2e-133 479.2 348 65.2
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 3.2e-133 479.2 382 62.8
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 1.2e-132 477.2 343 65.9
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 5.1e-131 471.9 310 69.4
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 8.1e-129 464.5 341 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 6.0e-124 448.4 338 62.1
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 1.3e-123 447.2 363 60.3
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.0e-123 446.0 343 61.5
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 3.9e-123 445.7 371 59.3
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.6e-121 440.3 342 60.8
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 3.7e-121 439.1 303 65.0
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.4e-120 437.2 366 58.5
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 3.1e-120 436.0 367 58.3
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.9e-118 429.5 323 65.6
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.4e-112 410.6 232 79.3
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.6e-111 406.4 350 59.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 7.7e-111 404.8 324 58.0
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 5.0e-110 402.1 284 67.3
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 4.3e-106 389.0 373 53.9
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 5.7e-106 388.7 340 53.8
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.2e-103 380.9 305 62.6
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 2.0e-98 363.6 314 57.6
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.4e-98 362.5 198 83.3
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.1e-96 356.3 203 80.3
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 7.7e-95 351.7 232 72.4
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 4.4e-90 335.9 198 74.7
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 1.8e-83 313.9 219 68.9
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 3.3e-82 309.7 288 53.8
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 4.4e-82 309.3 177 80.2
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 2.8e-81 306.6 231 64.5
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 8.5e-78 295.0 395 40.5
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 5.2e-75 285.8 303 46.5
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 8.3e-73 278.5 343 41.4
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.1e-72 276.2 229 61.1
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 6.8e-67 258.8 210 58.1
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.5e-66 257.7 221 59.3
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 3.5e-63 246.5 374 37.2
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 2.7e-55 220.3 197 56.9
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 6.6e-54 215.7 334 36.8
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.4e-43 181.4 125 71.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.4e-33 145.6 148 52.7
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.2e-32 143.3 116 57.8
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.1e-28 131.0 138 45.7
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.0e-22 112.1 64 76.6
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 6.9e-19 99.4 57 71.9
GSVIVG01001056001 Vitis vinifera HOM05D004580 ORTHO05D439289 6.7e-06 56.2 65 43.1


User provided reference genes

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