Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 2303.1 1354 100.0
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 0.0e+00 2238.0 1357 97.5
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1327.0 1430 54.8
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1303.5 1400 60.1
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1284.6 1447 56.2
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1247.6 1548 52.1
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1246.9 1434 52.4
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1204.9 1510 50.4
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1192.6 1361 55.4
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1188.3 1404 54.5
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1167.9 1417 53.7
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1163.3 1467 49.6
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1160.2 1489 48.6
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1159.8 1538 46.2
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1153.7 1382 51.7
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1152.9 1552 49.9
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1146.0 1431 51.8
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1144.4 1457 52.6
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1142.9 1458 50.8
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1140.9 1404 53.3
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1124.8 1499 49.2
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1122.5 1446 50.3
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1122.1 1417 53.7
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1118.2 1510 48.5
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1117.1 1551 44.7
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1114.8 1342 52.8
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1112.1 1550 47.3
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1106.7 1383 49.2
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1106.3 1442 50.5
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 1102.4 1424 50.6
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1097.0 1489 49.4
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 0.0e+00 1092.0 1364 53.5
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 0.0e+00 1090.5 1437 49.7
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1087.4 1392 46.5
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1082.8 1392 46.5
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 2.8e-311 1072.4 1513 46.2
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 3.7e-311 1072.0 1407 48.2
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 2.4e-310 1069.3 1501 47.9
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 4.1e-310 1068.5 1385 51.4
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 2.3e-308 1062.8 1433 45.7
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 2.9e-308 1062.4 1539 47.7
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 3.8e-308 1062.0 1421 52.6
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 1.9e-307 1059.7 1407 52.4
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 2.5e-307 1059.3 1476 47.3
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 5.6e-307 1058.1 1519 46.5
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 4.7e-306 1055.0 1544 49.4
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 3.0e-305 1052.4 1397 47.1
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 8.9e-305 1050.8 1410 49.5
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 2.0e-304 1049.7 1443 50.1
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.4e-304 1048.9 1432 45.3
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 8.3e-303 1044.3 1383 47.7
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 8.3e-303 1044.3 1571 44.6
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 8.6e-300 1034.2 1548 43.5
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 1.5e-299 1033.5 1386 50.1
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 2.5e-299 1032.7 1399 47.6
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 2.8e-298 1029.2 1378 47.5
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 8.0e-298 1027.7 1572 44.1
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 1.4e-297 1026.9 1507 45.5
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 5.2e-297 1025.0 1418 48.2
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 9.8e-296 1020.8 1395 50.2
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 1.4e-294 1016.9 1408 47.2
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.5e-293 1012.3 944 57.9
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 4.6e-293 1011.9 1601 44.7
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 7.8e-293 1011.1 1470 50.7
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.0e-292 1010.7 1430 45.2
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.7e-292 1010.0 1363 49.4
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.9e-291 1006.5 1361 50.2
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 2.5e-291 1006.1 1403 47.1
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 1.4e-289 1000.3 1501 45.4
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 3.1e-289 999.2 1393 49.5
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 2.4e-286 989.6 1486 46.6
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 1.1e-283 980.7 1377 45.5
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 7.6e-280 968.0 1382 47.8
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 3.2e-278 962.6 1820 40.2
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 3.5e-277 959.1 1525 44.5
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 6.6e-276 954.9 1573 44.1
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.5e-272 943.7 1391 49.5
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 1.3e-268 930.6 1401 50.4
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 3.5e-261 906.0 1434 44.4
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 3.0e-260 902.9 1385 46.6
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 5.1e-260 902.1 1485 47.3
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 1.1e-259 901.0 1368 43.1
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 9.9e-256 887.9 1507 40.9
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 2.7e-253 879.8 1227 47.2
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 6.9e-249 865.1 760 59.5
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 1.2e-248 864.4 938 52.5
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 2.5e-246 856.7 1422 44.4
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 2.7e-245 853.2 923 51.6
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 5.3e-241 839.0 1370 46.1
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 3.6e-213 746.5 1289 41.4
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 1.4e-212 744.6 1394 36.8
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.1e-205 720.7 1291 40.6
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 4.8e-202 709.5 762 51.3
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 2.1e-189 667.5 1175 39.3
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 2.1e-189 667.5 2371 28.9
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.5e-176 623.6 729 49.7
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 1.3e-170 605.1 1483 33.5
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 2.4e-169 600.9 564 57.4
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 3.6e-165 587.0 886 41.6
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 6.0e-152 543.1 1354 33.8
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.0e-139 501.5 1328 31.5
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 9.6e-134 482.6 875 41.3
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 7.6e-131 473.0 1174 36.9
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 1.3e-127 462.2 451 58.8
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 6.3e-109 400.2 549 44.4
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.0e-106 392.9 466 46.8
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 3.6e-104 384.4 1390 28.5
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 6.1e-104 383.6 746 35.7
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 1.1e-100 372.9 1504 33.4
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.1e-100 371.3 313 69.0
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 5.7e-94 350.5 1468 29.4
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.9e-91 340.5 483 52.4
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.5e-86 325.9 290 55.2
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 3.7e-85 321.2 311 62.4
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.9e-82 311.6 487 45.6
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 2.0e-67 262.3 268 52.6
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 1.3e-61 243.0 243 56.8
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 5.0e-58 231.1 782 28.5
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 1.2e-56 226.5 235 54.0
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 3.7e-53 214.9 236 58.1
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.5e-49 202.2 268 45.1
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 1.8e-47 196.1 151 68.2
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.3e-45 189.9 472 31.8
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-41 174.9 676 25.0
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 8.4e-37 160.6 152 57.9
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 4.2e-36 158.3 129 65.1
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 2.5e-33 149.1 202 45.0
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 3.1e-31 142.1 153 52.3
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.4e-29 134.0 670 24.9
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 2.7e-27 129.0 335 29.6
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 3.4e-22 112.1 100 57.0
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 7.6e-22 110.9 100 57.0
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 3.2e-20 105.5 181 37.6
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 3.9e-18 98.6 75 62.7
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 8.7e-18 97.4 213 31.5
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 1.4e-15 90.1 240 30.8
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 3.2e-12 79.0 74 59.5
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 8.7e-10 70.9 69 59.4
Os07g0517400 Oryza sativa ssp. japonica HOM05D005165 ORTHO05D006361 1.1e-09 70.5 84 50.0
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.6e-08 66.6 70 48.6
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 2.8e-08 65.9 57 54.4
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 1.8e-07 63.2 342 24.0
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.8e-07 63.2 48 58.3
SHI35683 Sapria himalayana HOM05D000558 ORTHO05D001857 9.0e-07 60.8 163 31.3


User provided reference genes

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