Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 8.7e-268 926.4 469 100.0
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 3.4e-264 914.4 469 98.3
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 2.0e-251 872.1 469 94.0
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 5.0e-207 724.5 461 79.0
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.5e-206 723.0 456 79.4
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.6e-203 712.2 457 78.1
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 1.7e-199 699.5 473 75.7
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 2.1e-197 692.6 465 74.8
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.1e-196 690.3 454 76.2
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 2.3e-196 689.1 470 74.9
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 1.2e-195 686.8 457 76.6
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 2.0e-195 686.0 474 74.3
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 4.9e-194 681.4 462 72.9
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 4.9e-194 681.4 465 74.6
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.2e-192 676.8 461 74.2
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 3.5e-192 675.2 455 74.1
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 7.8e-192 674.1 481 73.0
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 7.8e-192 674.1 461 74.0
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 1.3e-191 673.3 453 74.0
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.3e-191 673.3 468 73.3
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 3.0e-191 672.2 391 82.9
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 3.9e-191 671.8 462 74.0
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 5.1e-191 671.4 459 74.3
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 1.9e-190 669.5 464 73.3
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 2.5e-190 669.1 470 73.4
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 7.3e-190 667.5 470 73.2
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 9.5e-190 667.2 468 71.8
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.1e-189 666.0 469 73.1
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 2.8e-189 665.6 461 73.8
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 3.6e-189 665.2 454 72.9
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 4.7e-189 664.8 471 72.4
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 4.7e-189 664.8 400 80.5
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 4.7e-189 664.8 454 72.5
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 1.4e-188 663.3 467 73.2
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 1.8e-188 662.9 461 73.8
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 1.8e-188 662.9 454 72.2
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 2.4e-188 662.5 383 83.3
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 3.1e-188 662.1 409 79.2
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 3.1e-188 662.1 458 73.4
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 3.1e-188 662.1 475 71.8
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 3.1e-188 662.1 389 83.3
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 4.0e-188 661.8 468 71.6
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 6.8e-188 661.0 456 72.4
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 1.5e-187 659.8 460 72.0
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 3.4e-187 658.7 454 73.1
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 3.4e-187 658.7 468 71.6
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.4e-187 658.3 454 71.6
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 4.4e-187 658.3 454 71.6
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 4.4e-187 658.3 460 73.3
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 5.8e-187 657.9 454 71.6
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 5.8e-187 657.9 461 71.6
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 5.8e-187 657.9 459 71.9
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 7.6e-187 657.5 468 71.6
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 9.9e-187 657.1 392 80.1
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 1.3e-186 656.8 459 72.1
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.7e-186 656.4 458 71.4
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 1.7e-186 656.4 463 71.7
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.7e-186 656.4 454 73.1
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.2e-186 656.0 454 72.7
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.2e-186 656.0 454 72.7
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 2.9e-186 655.6 458 71.2
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 2.9e-186 655.6 454 71.8
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.9e-186 655.6 463 71.7
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 3.8e-186 655.2 454 71.8
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 4.9e-186 654.8 463 71.5
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 6.4e-186 654.4 438 73.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.1e-185 653.7 454 71.1
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.4e-185 653.3 470 71.5
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 1.9e-185 652.9 455 72.1
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 1.9e-185 652.9 454 71.8
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 2.4e-185 652.5 469 71.9
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 2.4e-185 652.5 466 71.2
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.2e-185 652.1 446 72.9
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 9.2e-185 650.6 404 78.7
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 6.0e-184 647.9 419 75.4
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 7.8e-184 647.5 531 65.5
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 1.0e-183 647.1 479 70.1
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 1.3e-183 646.7 419 75.7
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 3.0e-183 645.6 382 80.4
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 3.9e-183 645.2 389 81.0
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 3.9e-183 645.2 402 78.9
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.9e-182 642.9 487 68.0
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.9e-182 642.9 458 69.9
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 4.3e-182 641.7 469 70.6
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 7.3e-182 641.0 440 74.1
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 9.6e-182 640.6 470 70.6
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 1.6e-181 639.8 374 81.3
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 1.6e-181 639.8 378 80.7
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 1.6e-181 639.8 382 81.9
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 2.4e-180 636.0 463 69.5
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 2.6e-179 632.5 393 77.6
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 7.6e-179 630.9 459 69.3
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.3e-178 630.2 385 77.9
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.9e-178 629.0 398 76.1
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 4.9e-178 628.2 396 76.8
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 4.9e-178 628.2 367 80.7
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 6.4e-178 627.9 381 79.0
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 1.1e-177 627.1 438 71.2
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 1.4e-177 626.7 423 73.5
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.2e-177 625.5 463 68.3
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 2.1e-176 622.9 399 76.2
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 3.3e-174 615.5 412 73.3
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 4.3e-174 615.1 456 67.3
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 1.3e-173 613.6 439 69.5
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 3.6e-173 612.1 461 66.2
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.4e-164 582.8 463 68.3
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 3.4e-163 578.9 354 77.7
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.5e-158 563.5 415 68.9
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 3.9e-151 538.9 459 64.3
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 7.4e-150 534.6 388 67.3
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.1e-148 530.8 375 72.3
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 5.0e-146 521.9 469 59.9
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 3.0e-143 512.7 378 66.1
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 6.3e-141 505.0 462 60.2
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.4e-140 503.1 371 64.4
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.7e-138 496.9 362 66.0
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 6.1e-136 488.4 382 63.4
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 6.7e-135 485.0 338 72.2
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 8.8e-135 484.6 359 66.0
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 2.5e-129 466.5 286 78.3
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 2.0e-126 456.8 269 79.9
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 7.0e-124 448.4 276 76.8
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 6.5e-122 441.8 324 70.4
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 3.7e-117 426.0 471 52.0
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.7e-114 417.2 375 60.0
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 8.0e-112 408.3 252 77.8
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 2.8e-109 399.8 282 69.1
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.1e-108 397.9 338 63.6
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.6e-99 367.5 342 59.6
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 4.3e-97 359.4 327 60.6
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 7.3e-97 358.6 357 51.3
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 1.5e-94 350.9 329 52.0
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 1.4e-92 344.4 211 82.5
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 3.0e-90 336.7 234 72.2
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 1.6e-88 330.9 200 78.5
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 1.4e-79 301.2 221 68.8
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 5.4e-76 289.3 211 66.8
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 7.3e-73 278.9 179 75.4
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 1.4e-68 264.6 242 58.3
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 7.3e-65 252.3 242 56.2
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.1e-63 248.4 350 41.4
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 6.4e-61 239.2 124 87.1
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 7.3e-57 225.7 292 43.5
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 9.0e-55 218.8 137 81.8
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 6.2e-48 196.1 133 72.9
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.7e-37 161.4 85 88.2
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 1.9e-36 157.9 121 67.8
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 1.6e-35 154.8 115 73.9
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 6.1e-35 152.9 111 76.6
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 1.3e-32 145.2 117 63.2
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 4.5e-30 136.7 77 89.6
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 3.4e-22 110.5 117 56.4
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 7.7e-22 109.4 74 73.0
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 1.0e-18 99.0 64 71.9
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 4.8e-16 90.1 67 65.7
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 1.4e-15 88.6 58 63.8
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 7.0e-15 86.3 50 78.0
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 7.0e-15 86.3 61 83.6
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 2.0e-14 84.7 61 82.0
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 1.5e-09 68.6 44 70.5
Aqoxy2G00271 Aquilegia oxysepala HOM05D004538 ORTHO05D078146 7.5e-09 66.2 93 45.2
CDE03G0510 Ceratophyllum demersum HOM05D004538 ORTHO05D129046 4.8e-08 63.5 166 37.3
Oeu026585.1 Olea europaea HOM05D004538 ORTHO05D289065 1.4e-07 62.0 220 25.9


User provided reference genes

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