Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 3.5e-250 867.8 443 100.0
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 2.8e-247 858.2 443 98.6
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.8e-198 696.0 457 78.8
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 3.4e-197 691.8 454 78.9
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 5.8e-197 691.0 453 79.0
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 7.6e-197 690.6 450 80.0
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.3e-196 689.9 453 78.6
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 1.4e-195 686.4 430 81.4
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 3.2e-195 685.3 444 80.2
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 3.2e-195 685.3 444 80.2
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.2e-195 685.3 436 80.3
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 4.2e-195 684.9 455 79.1
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 9.3e-195 683.7 435 80.9
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 1.2e-194 683.3 448 78.3
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.1e-194 682.6 449 78.4
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.1e-194 682.6 411 83.0
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.3e-193 679.9 452 78.1
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 3.0e-193 678.7 450 77.8
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.1e-193 677.9 367 90.2
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 8.7e-193 677.2 452 77.0
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 2.5e-192 675.6 451 78.7
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 3.3e-192 675.2 449 77.7
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 4.3e-192 674.9 450 77.6
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 5.6e-192 674.5 455 78.0
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 5.6e-192 674.5 456 75.9
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 5.6e-192 674.5 394 83.8
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 7.4e-192 674.1 451 77.8
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 3.7e-191 671.8 451 76.9
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 3.7e-191 671.8 386 85.8
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 4.8e-191 671.4 451 77.8
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 8.2e-191 670.6 386 85.5
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 8.2e-191 670.6 450 77.8
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 8.2e-191 670.6 385 84.9
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 1.8e-190 669.5 468 75.4
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 3.1e-190 668.7 416 81.2
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 4.0e-190 668.3 391 85.7
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 6.9e-190 667.5 451 76.9
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 1.2e-189 666.8 450 77.6
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.5e-189 666.4 448 77.5
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 2.0e-189 666.0 431 79.4
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.0e-189 666.0 416 81.2
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.0e-189 666.0 400 81.8
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.0e-188 663.7 400 81.5
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 1.3e-188 663.3 446 77.1
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 1.3e-188 663.3 391 83.9
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 1.7e-188 662.9 454 76.0
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 2.9e-188 662.1 447 76.7
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 4.9e-188 661.4 441 77.1
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 4.9e-188 661.4 450 76.2
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 6.5e-188 661.0 447 75.6
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 6.5e-188 661.0 449 77.1
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 6.5e-188 661.0 446 76.9
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 8.4e-188 660.6 449 76.2
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 1.1e-187 660.2 385 84.9
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.1e-187 660.2 446 76.9
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.1e-187 660.2 513 69.6
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 1.9e-187 659.4 396 83.6
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 1.9e-187 659.4 366 87.7
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 2.5e-187 659.1 409 79.5
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 4.2e-187 658.3 447 75.2
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 4.2e-187 658.3 437 76.4
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 2.7e-186 655.6 423 78.5
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 3.5e-186 655.2 392 82.4
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 6.0e-186 654.4 387 82.9
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 7.9e-186 654.1 446 75.3
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 1.0e-185 653.7 392 82.7
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 1.0e-185 653.7 392 82.7
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 1.0e-185 653.7 449 75.5
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.8e-185 652.9 386 83.7
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 2.3e-185 652.5 391 81.3
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 5.1e-185 651.4 451 74.9
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 6.7e-185 651.0 400 80.5
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 8.7e-185 650.6 417 80.1
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 1.1e-184 650.2 443 75.4
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.5e-184 649.8 442 75.8
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.5e-184 649.8 391 81.1
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.9e-184 649.4 408 80.6
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.9e-184 649.4 410 78.8
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.5e-184 649.0 443 75.4
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 2.5e-184 649.0 382 82.5
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 4.3e-184 648.3 440 75.2
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 4.3e-184 648.3 408 80.6
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 4.3e-184 648.3 408 80.6
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 4.3e-184 648.3 408 80.6
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 5.7e-184 647.9 446 74.4
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 9.7e-184 647.1 384 83.3
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 9.7e-184 647.1 446 74.7
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.7e-184 647.1 372 85.5
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 9.7e-184 647.1 392 81.9
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.3e-183 646.7 375 83.7
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.3e-183 646.7 443 74.7
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 1.6e-183 646.4 443 75.6
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 3.7e-183 645.2 453 73.7
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 3.7e-183 645.2 452 73.7
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.1e-182 643.7 444 73.6
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.4e-182 643.3 438 75.3
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 9.0e-182 640.6 461 72.5
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 1.3e-180 636.7 386 79.8
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 5.1e-177 624.8 368 84.2
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 8.2e-175 617.5 429 72.0
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.1e-174 617.1 429 71.6
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 3.4e-173 612.1 328 91.5
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.9e-171 606.3 447 71.1
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 3.2e-171 605.5 385 75.3
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 2.3e-169 599.4 398 72.9
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 8.2e-167 590.9 364 78.0
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 3.5e-165 585.5 385 74.3
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 1.1e-158 563.9 351 79.8
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.7e-156 556.6 426 70.7
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 6.5e-156 554.7 386 70.7
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 8.8e-153 544.3 382 73.6
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 3.4e-152 542.3 373 71.0
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.6e-146 523.5 287 88.9
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 3.6e-146 522.3 502 58.2
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 3.0e-145 519.2 389 66.6
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 8.3e-143 511.1 287 86.1
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 2.9e-140 502.7 417 60.0
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.3e-135 487.3 368 69.8
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 2.9e-132 476.1 344 75.9
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 2.1e-130 469.9 311 77.8
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 8.0e-130 468.0 363 62.0
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.5e-120 437.2 298 73.8
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 4.9e-119 432.2 233 89.7
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.2e-114 417.5 312 68.3
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 6.4e-111 405.2 442 54.1
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 9.0e-97 358.2 224 75.4
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 9.9e-88 328.2 256 68.4
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 3.5e-77 293.1 226 65.0
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 6.0e-77 292.4 273 59.7
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 1.0e-76 291.6 299 47.8
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 6.5e-71 272.3 161 82.0
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 8.4e-71 271.9 246 59.3
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 3.0e-68 263.5 355 42.8
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 2.0e-56 224.2 208 64.4
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 1.9e-54 217.6 367 40.6
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 1.9e-46 191.0 184 60.9
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 1.2e-45 188.3 174 60.9
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.8e-44 182.2 113 75.2
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.2e-27 128.6 77 77.9
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.3e-26 125.2 83 68.7
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.3e-26 125.2 83 68.7
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.8e-25 121.3 129 53.5
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.8e-25 121.3 129 53.5
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.5e-22 110.9 74 75.7
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 6.1e-21 106.3 67 74.6
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 8.0e-21 105.9 113 52.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.7e-18 97.1 69 65.2
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 3.7e-10 70.5 56 64.3
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 9.2e-09 65.9 87 48.3


User provided reference genes

Program Settings